mRNA_H-paniculata_contig2799.7648.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2799.7648.1
Unique NamemRNA_H-paniculata_contig2799.7648.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2799.7648.1 vs. uniprot
Match: D7G571_ECTSI (O-phosphoseryl-tRNA(Sec) selenium transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G571_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 3.490e-23
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 EQVTRLLSNRRLPDRGWDDIQIEFFLGELSVMDSNNFFGNVGVGEREGRVYSSLVARRNY 180
            +QVT LLSNRRLP RGWDD QIE+ L E+S+MDSNNF  NVGVGEREGRVYS LVARRN+
Sbjct:   30 KQVTALLSNRRLPTRGWDDAQIEYLLTEISLMDSNNFSENVGVGEREGRVYSGLVARRNF 89
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BLAST of mRNA_H-paniculata_contig2799.7648.1 vs. uniprot
Match: A0A077ZCL6_TRITR (SLA LP auto ag domain containing protein n=1 Tax=Trichuris trichiura TaxID=36087 RepID=A0A077ZCL6_TRITR)

HSP 1 Score: 90.1 bits (222), Expect = 2.760e-22
Identity = 37/60 (61.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 EQVTRLLSNRRLPDRGWDDIQIEFFLGELSVMDSNNFFGNVGVGEREGRVYSSLVARRNY 180
            +++ +LL ++++PD  WDD+ IE+F G+LS MDSNNF GN+GVGEREGRVYS+LVA+R+Y
Sbjct:   30 KKILQLLRHKKIPDEPWDDVTIEYFFGKLSAMDSNNFVGNMGVGEREGRVYSNLVAQRHY 89
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BLAST of mRNA_H-paniculata_contig2799.7648.1 vs. uniprot
Match: A0A0B1PPZ7_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A0B1PPZ7_9BILA)

HSP 1 Score: 87.0 bits (214), Expect = 1.030e-20
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   16 LLSNRRLPDRGWDDIQIEFFLGELSVMDSNNFFGNVGVGEREGRVYSSLVARRNY 180
            LL  +++PD  WDD+ IE+F G+LS MDSNNF GN+GVGEREGRVYS+LVA+R+Y
Sbjct:   53 LLLQKKIPDEPWDDVTIEYFFGKLSAMDSNNFVGNMGVGEREGRVYSNLVAQRHY 107
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BLAST of mRNA_H-paniculata_contig2799.7648.1 vs. uniprot
Match: A0A7S0KWV4_MICPS (O-phosphoseryl-tRNA(Sec) selenium transferase (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KWV4_MICPS)

HSP 1 Score: 85.1 bits (209), Expect = 4.790e-20
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    7 VTRLLSNRRLPDRGWDDIQIEFFLGELSVMDSNNFFGNVGVGEREGRVYSSLVARRNY 180
            VT LLS RRLP  GWDD  IE FL E ++MDSNNF  NVGVGERE RVYS LVARR++
Sbjct:   35 VTSLLSERRLPKDGWDDHSIESFLSEAAMMDSNNFLDNVGVGEREARVYSPLVARRHW 92
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BLAST of mRNA_H-paniculata_contig2799.7648.1 vs. uniprot
Match: A0A5S6R295_TRIMR (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6R295_TRIMR)

HSP 1 Score: 90.9 bits (224), Expect = 5.610e-20
Identity = 39/60 (65.00%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 EQVTRLLSNRRLPDRGWDDIQIEFFLGELSVMDSNNFFGNVGVGEREGRVYSSLVARRNY 180
            ++V +LL ++++PD  WDD+ IE+FLG+LS MDSNNF GN+GVGEREGRVYS LVA R+Y
Sbjct:   30 KRVLQLLRHKKIPDEPWDDLTIEYFLGKLSAMDSNNFVGNMGVGEREGRVYSKLVAERHY 89
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BLAST of mRNA_H-paniculata_contig2799.7648.1 vs. uniprot
Match: A0A7S0G372_9RHOD (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G372_9RHOD)

HSP 1 Score: 89.4 bits (220), Expect = 1.950e-19
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    7 VTRLLSNRRLPDRGWDDIQIEFFLGELSVMDSNNFFGNVGVGEREGRVYSSLVARRNY 180
            V RLL+NRRLP+ GWDD+ I  FL E++ MDSNNF GN G+GEREGRVYSSLV  RN+
Sbjct:   32 VRRLLANRRLPEHGWDDVTINLFLHEIASMDSNNFPGNAGLGEREGRVYSSLVRERNF 89
[Close]
BLAST of mRNA_H-paniculata_contig2799.7648.1 vs. uniprot
Match: A0A0B7BZL4_9EUPU (O-phosphoseryl-tRNA(Sec) selenium transferase (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7BZL4_9EUPU)

HSP 1 Score: 82.4 bits (202), Expect = 4.730e-19
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    4 QVTRLLSNRRLPDRGWDDIQIEFFLGELSVMDSNNFFGNVGVGEREGRVYSSLVARRNY 180
            ++ +L+ +R+LPD GWDD  IE  L EL+VMDSNNF GN GVGERE R+ SSLV+RR+Y
Sbjct:   31 KIKQLIQHRKLPDEGWDDQTIELLLHELAVMDSNNFPGNCGVGERESRIASSLVSRRHY 89
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BLAST of mRNA_H-paniculata_contig2799.7648.1 vs. uniprot
Match: UPI0007119640 (o-phosphoseryl-tRNA selenium transferase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007119640)

HSP 1 Score: 88.2 bits (217), Expect = 5.750e-19
Identity = 40/60 (66.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 EQVTRLLSNRRLPDRGWDDIQIEFFLGELSVMDSNNFFGNVGVGEREGRVYSSLVARRNY 180
            +QVT LLS++++P+ GWDD  IEFFL +LS+MDSNNF  N GVGEREGRV S+LVA+R+Y
Sbjct:  105 KQVTELLSHKKIPEIGWDDQSIEFFLNDLSLMDSNNFLHNSGVGEREGRVESTLVAQRHY 164
[Close]
BLAST of mRNA_H-paniculata_contig2799.7648.1 vs. uniprot
Match: UPI0006449275 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006449275)

HSP 1 Score: 87.4 bits (215), Expect = 9.710e-19
Identity = 37/58 (63.79%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    7 VTRLLSNRRLPDRGWDDIQIEFFLGELSVMDSNNFFGNVGVGEREGRVYSSLVARRNY 180
            VT++LS RRLP++GWDD  IE+FL +L++MDSNNF  N GVGEREGR+YS +V+RR++
Sbjct:   32 VTQILSQRRLPEKGWDDKTIEWFLAQLAMMDSNNFIENAGVGEREGRLYSDIVSRRHF 89
[Close]
BLAST of mRNA_H-paniculata_contig2799.7648.1 vs. uniprot
Match: A0A0W8CHK7_PHYNI (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CHK7_PHYNI)

HSP 1 Score: 85.5 bits (210), Expect = 1.180e-18
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 EQVTRLLSNRRLPDRGWDDIQIEFFLGELSVMDSNNFFGNVGVGEREGRVYSSLVARRNY 180
            +QVT LL+ RRLPD+GWDD  +E  L  LS MDSNNF G+ G GERE RV+S LVARR++
Sbjct:   30 KQVTTLLAQRRLPDKGWDDASVELLLQTLSAMDSNNFLGSAGAGEREARVFSPLVARRHF 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2799.7648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G571_ECTSI3.490e-2378.33O-phosphoseryl-tRNA(Sec) selenium transferase n=2 ... [more]
A0A077ZCL6_TRITR2.760e-2261.67SLA LP auto ag domain containing protein n=1 Tax=T... [more]
A0A0B1PPZ7_9BILA1.030e-2067.27Uncharacterized protein n=1 Tax=Trichuris suis Tax... [more]
A0A7S0KWV4_MICPS4.790e-2070.69O-phosphoseryl-tRNA(Sec) selenium transferase (Fra... [more]
A0A5S6R295_TRIMR5.610e-2065.00O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]
A0A7S0G372_9RHOD1.950e-1968.97O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]
A0A0B7BZL4_9EUPU4.730e-1962.71O-phosphoseryl-tRNA(Sec) selenium transferase (Fra... [more]
UPI00071196405.750e-1966.67o-phosphoseryl-tRNA selenium transferase n=1 Tax=B... [more]
UPI00064492759.710e-1963.79hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A0W8CHK7_PHYNI1.180e-1863.33O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2799contigH-paniculata_contig2799:17677..18554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue2.8e-19
Seed eggNOG ortholog2880.D7G571
Preferred nameSEPSECS
KEGG rclassRC02965,RC02966
KEGG koko:K03341
KEGG ReactionR08224
KEGG Pathwayko00450,ko00970,map00450,map00970
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0001514,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006412,GO:0006414,GO:0006417,GO:0006451,GO:0006518,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009069,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016259,GO:0016740,GO:0016785,GO:0019222,GO:0019538,GO:0019752,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0034641,GO:0034645,GO:0042802,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:0098621,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:2000112
EggNOG free text desc.transferase activity, transferring selenium-containing groups
EggNOG OGsCOG0076@1,KOG3843@2759
EC2.9.1.2
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929847.3335347-CDS-H-paniculata_contig2799:17676..178231622929847.3335347-CDS-H-paniculata_contig2799:17676..17823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2799 17677..17823 +
1691481037.4405403-CDS-H-paniculata_contig2799:17676..178231691481037.4405403-CDS-H-paniculata_contig2799:17676..17823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2799 17677..17823 +
1622929847.3510654-CDS-H-paniculata_contig2799:18521..185541622929847.3510654-CDS-H-paniculata_contig2799:18521..18554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2799 18522..18554 +
1691481037.4543593-CDS-H-paniculata_contig2799:18521..185541691481037.4543593-CDS-H-paniculata_contig2799:18521..18554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2799 18522..18554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2799.7648.1prot_H-paniculata_contig2799.7648.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2799 17677..18554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2799.7648.1

>prot_H-paniculata_contig2799.7648.1 ID=prot_H-paniculata_contig2799.7648.1|Name=mRNA_H-paniculata_contig2799.7648.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
EQVTRLLSNRRLPDRGWDDIQIEFFLGELSVMDSNNFFGNVGVGEREGRV
YSSLVARRNY
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mRNA from alignment at H-paniculata_contig2799:17677..18554+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2799.7648.1 ID=mRNA_H-paniculata_contig2799.7648.1|Name=mRNA_H-paniculata_contig2799.7648.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=878bp|location=Sequence derived from alignment at H-paniculata_contig2799:17677..18554+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACAGGTGACACGCTTGCTGTCGAATCGGCGGTTACCGGATAGAGGTTG
GGATGATATCCAGATTGAGTTTTTCTTGGGTGAGCTGTCCGTCATGGACA
GCAACAACTTTTTCGGCAACGTTGGCGTGGGGGAGCGAGAAGGGCGGGTA
AGGAGGATATTTTGCTTCCGCCAAATATCACAGCAAATATTGATGGCAGG
ATGACACTTTGGTGTCCAAGTGCAAACGAGGTCTGGTTTTGTTTTACATC
GTGATGCCATCTTTCAGTCACATGAGTGTACTGTTAGTTGAGTGGATTGT
ATATGCCGAGGGCCCTTGTACGGAGTGCCCGCCAAGCTTTTGTATTGACA
GCGCTCCGTGGCTTTTTTTTTCCTGGATAAGCTTTCGGCACGTGGTTTGA
TGTTTGTTTCGCTATTTTACAGGCAATATATGGTTATCGCCCCAACTGTT
TCCGGTAATTTCACACCCTGGAAAAAAACACTCATGGCTGTGTAAGTCTC
TTATTCCTTCAATTTTCTAACAACTCAAAGTACGCAACGTTGGTAATTTT
TTTTCATTTGTCAGCTTACGTCCAAAAATATTGAGAGATTACAGTGTTCC
ACGGTGTAGGTATATCGAACACAAAATATCTTTTACCCTGTTACCGTTGT
CCCTCCTTATTGCTAGAAGGTTTACGCAACTTCGGTTTCACGCACAGAGG
GGAAGCATCCTCAGCAAGGTAAAATTAAAAACAAATGTACGGTTCTCAGT
ATAATACCTGTAGTAAGTGAGTGAAGGTTGCCCACCCTCCTCCGTCTCCC
CCCTCCTCCCTGATTTCTTTCACACTGAACTAAAACCAAAATAAGGTATA
CTCTAGCCTGGTCGCTCGGCGTAACTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2799:17677..18554+

>mRNA_H-paniculata_contig2799.7648.1 ID=mRNA_H-paniculata_contig2799.7648.1|Name=mRNA_H-paniculata_contig2799.7648.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig2799:17677..18554+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACAGGTGACACGCTTGCTGTCGAATCGGCGGTTACCGGATAGAGGTTG
GGATGATATCCAGATTGAGTTTTTCTTGGGTGAGCTGTCCGTCATGGACA
GCAACAACTTTTTCGGCAACGTTGGCGTGGGGGAGCGAGAAGGGCGGGAA
CAGGTGACACGCTTGCTGTCGAATCGGCGGTTACCGGATAGAGGTTGGGA
TGATATCCAGATTGAGTTTTTCTTGGGTGAGCTGTCCGTCATGGACAGCA
ACAACTTTTTCGGCAACGTTGGCGTGGGGGAGCGAGAAGGGCGGGTATAC
TCTAGCCTGGTCGCTCGGCGTAACTACGTATACTCTAGCCTGGTCGCTCG
GCGTAACTAC
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