mRNA_H-paniculata_contig2778.7597.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2778.7597.1
Unique NamemRNA_H-paniculata_contig2778.7597.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2778.7597.1 vs. uniprot
Match: D8LIM7_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM7_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 3.710e-61
Identity = 99/167 (59.28%), Postives = 128/167 (76.65%), Query Frame = 2 
Query:   59 LSVPQGPLIAAIVVLVVAAILGVRTSLQAAS-SKPFSMEGFE---KKKEAGDPEAEPVDADPRDTTEEDYPNGGWLDDPLMAKSMAVKKCDLDRVHHLNMTTKRFAREYEGVKPVIIEGLVGDKWSASSAGRWAQPSLKDSFGLSPIHVSSGAGIVHSGGESLHTVT 547
            + +P+  +  A  VLV+AAILGV+TSLQAAS SKPFSMEGF+   +K      + +  +   RDTTEED PNG WL+DP+MA +M + +CD++RVHH NMTTKRF+R YEGVKPVIIEGL+ +KW+A + GRW++P L  +F  +P+H+SSGAGIVHSGGESL TVT
Sbjct:   34 VQIPKAAIAVAAAVLVLAAILGVKTSLQAASNSKPFSMEGFDANGEKTGGRGRQQQTFEPSERDTTEEDAPNGDWLEDPIMANTMGISRCDIERVHHTNMTTKRFSRHYEGVKPVIIEGLIDEKWAARATGRWSRPGLLSTFSDAPVHISSGAGIVHSGGESLQTVT 200
[Close]
BLAST of mRNA_H-paniculata_contig2778.7597.1 vs. uniprot
Match: A0A6H5K503_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K503_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 3.840e-55
Identity = 97/167 (58.08%), Postives = 126/167 (75.45%), Query Frame = 2 
Query:   59 LSVPQGPLIAAIVVLVVAAILGVRTSLQAAS-SKPFSMEGFEK---KKEAGDPEAEPVDADPRDTTEEDYPNGGWLDDPLMAKSMAVKKCDLDRVHHLNMTTKRFAREYEGVKPVIIEGLVGDKWSASSAGRWAQPSLKDSFGLSPIHVSSGAGIVHSGGESLHTVT 547
            + +P+  +  A  +LV+AAILGV+ SLQAAS SKPFSMEGF+    K      + +  +   RDTTEED PNG WL+DP+MA +M + +CD++RVHH NMTTKRF+R YEGVKPVIIEGL+ +KW+A + GRW++P L  +F  +P+H+SSGAGIVHSGGESL TVT
Sbjct:   34 VQIPKAVIAVAAALLVLAAILGVKASLQAASNSKPFSMEGFDANGDKTGGRGRQQQTFEPSERDTTEEDAPNGDWLEDPIMANTMGISRCDIERVHHTNMTTKRFSRHYEGVKPVIIEGLIDEKWAARATGRWSRPGLLSTFSDAPVHISSGAGIVHSGGESLQTVT 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2778.7597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIM7_ECTSI3.710e-6159.28Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K503_9PHAE3.840e-5558.08JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2778contigH-paniculata_contig2778:5723..11927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_004450.1
Exons3
Model size547
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2778.7597.1prot_H-paniculata_contig2778.7597.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2778 5723..11761 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.3958535-CDS-H-paniculata_contig2778:5722..57791622929840.3958535-CDS-H-paniculata_contig2778:5722..5779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2778 5723..5779 -
1691481034.4071255-CDS-H-paniculata_contig2778:5722..57791691481034.4071255-CDS-H-paniculata_contig2778:5722..5779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2778 5723..5779 -
1622929840.4177418-CDS-H-paniculata_contig2778:10208..104131622929840.4177418-CDS-H-paniculata_contig2778:10208..10413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2778 10209..10413 -
1691481034.4168687-CDS-H-paniculata_contig2778:10208..104131691481034.4168687-CDS-H-paniculata_contig2778:10208..10413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2778 10209..10413 -
1622929840.4307373-CDS-H-paniculata_contig2778:11642..117611622929840.4307373-CDS-H-paniculata_contig2778:11642..11761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2778 11643..11761 -
1691481034.424917-CDS-H-paniculata_contig2778:11642..117611691481034.424917-CDS-H-paniculata_contig2778:11642..11761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2778 11643..11761 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.4500828-UTR-H-paniculata_contig2778:11761..119271622929840.4500828-UTR-H-paniculata_contig2778:11761..11927Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2778 11762..11927 -
1691481034.4338224-UTR-H-paniculata_contig2778:11761..119271691481034.4338224-UTR-H-paniculata_contig2778:11761..11927Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2778 11762..11927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2778.7597.1

>prot_H-paniculata_contig2778.7597.1 ID=prot_H-paniculata_contig2778.7597.1|Name=mRNA_H-paniculata_contig2778.7597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MEGFEKKKEAGDPEAEPVDADPRDTTEEDYPNGGWLDDPLMAKSMAVKKC
DLDRVHHLNMTTKRFAREYEGVKPVIIEGLVGDKWSASSAGRWAQPSLKD
SFGLSPIHVSSGAGIVHSGGESLHTVT
back to top

mRNA from alignment at H-paniculata_contig2778:5723..11927-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2778.7597.1 ID=mRNA_H-paniculata_contig2778.7597.1|Name=mRNA_H-paniculata_contig2778.7597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6205bp|location=Sequence derived from alignment at H-paniculata_contig2778:5723..11927- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTTGTAACAACCACGGCAGGCAAAACATGAGTGTGCCCGCCCCGCCTCC
GACGCCCTCTTTCGGTCCCACAGGGTCCATTAATAGCAGCCATAGTGGTG
CTGGTGGTGGCTGCGATCCTAGGTGTCAGGACAAGTCTGCAGGCCGCCAG
CAGCAAGCCTTTTAGCATGGAGGGGTTTGAAAAGAAAAAAGAGGCGGGTG
ACCCGGAGGCGGAACCCGTGGACGCAGACCCGCGCGATACTACCGAAGAA
GACTACCCGAACGGTGGTTGGCTTGACGATCCCCTGTGAGTACTGAAGCC
CTTTAAGACGCGGTGCTTTTCGAACCATGATTACATGCGATTCGTAAGTT
GAATGAGCAGTTTTCTCGAGCGTTCACCAGGAGTACCCAAAAGCAGGTAG
GTCTGATCTGTGTGCCCAAAAATAGATGTATCTGCGGTTGTTTGCGTGAC
GTAGTCTAACGTATATAACCTGTTTTCTGTTGTAGGAAAAAAAAAGGTTC
CAAAAACAGATATGTCTGCGATGGGTTGTGTCCGGAGGTCTGATATATCC
TATTTTTGTTGTATGAAAAACAACCTCCTAAGAACATATCTCCAAAAGCA
GATTTCAAGAAGGCTATGTCCCTGAAAAGTCGCACTTGATCGACTAATCT
GACCATCATATGGAGTGATGTAAACGCACTACAGTAACCATTTTTCCAAA
CCGGATCTTCTCGCAGACTACGGTGCTATTTTCGGACACCGAAAGTTGTT
ATGTTGCAAAGATTTACCTCACTGAGATCTGTCATTAGATGGATGCAGTT
TTTGACTAAACATGGACTTTCCGGTCGGTGAAACTGAGTCGGAGAATAAT
ATCGCCCGCGGAGCCGCTTACGCCGCCCCCCTCGGTATATCCCCAAAATG
GAACGGAATATACCCGACTACTCAAGCCGACTATTTCCCTGAACCGAAAA
CAGAGTATAGTTGACTAAGCAAATGACGTGAGTACAATAACTGAGTTGCA
GCTGTTGGGTGTGTGGGAGAGTACTATTGGAGTACTGCCTTGCGTGGTAC
ATGTTATTTTAGTAATAGAGCTAACTCAACCTCTGTTCAGTCCGCCCCTT
GTCCTCGGCCAATGCAAAATGCTACGCTCACAGTGGGGACTCGTTTCGTT
CGCAGTGGCTCGCTACGCTTTCGCAAGTAAACTCGACGTTCACGAAGACT
CGCTTTTTTCCTAACTTCGTGCAGTACTGATGACGATCCAACGTGTATGT
ATTATTTGTCCCTCGTCCCCTGTCTTGACATTTTTCTCTTTTTCACGTGC
GTGCTCCCCCCCTCCCCCCACGCGATTAAAAAAAATGTATGTATTTTCGG
GTTTATTCGTTGAATCTGATTACCTTATGCATTTTTTTTCTTGTTTTTTG
GAGGGAAGTGTTAAATTGCTACCTTAGTATACAAAGCACCAAGCAAAAAA
AAAATGCGAACTGAATACTACTTTTGGTCTGTCCAAACCGTAAATACTTT
TGAACAAAATAAAGCATGGCAAAGTCGATGGCGGTCAAGAAGTGCGACTT
GGACAGGGTTCACCATCTCAACATGACCACGAAACGCTTCGCCCGCGAGT
ACGAGGGCGTGAAGCCCGTCATTATCGAGGGCTTGGTGGGAGATAAGTGG
TCTGCGTCCAGCGCCGGACGGTGGGCTCAACCAAGCCTCAAAGACTCTTT
TGGCCTGTCCCCCATTCATGTGAGATTTTCACGAATCCAACGAGTTACTC
GTCATCTGAAACGACTAATTGCGACCTCTTTATCCTAATAGAAAGACGAA
GAGTCTTCTTCAGTTCGTCCAGTCCCAGTTATGTTCTACGCTTTCAGACT
GTTTGTATGCATGCTATGGTATGTGGGAGCAAATTTCTTGTTTAGCTTGA
CCTCTGTTGGGGGTCGATATTTTGGTGTAAAGGGGTACAGATGTCTAATT
TGTCGTCGGATGTGTGGAGAGGCTCGACCGTATATATGTCCAGGAGCCTG
TGTGTCACCTTGACAAAATTGACAGTTTTTTGTAGCCTCTGTGATTGGTT
TGTATCTCTTCGAGCACCCCAAGAAATCCTTTTTCACATTTCGGTCTGGG
AAAGTTGCTGGGAACTTTTGTAAATCAAAATTGAGGCATATAATACGTAT
AGAGGAACGAAGCTAGCGGCCAGCGATACAATGCTCGCGTGCATGCGGAA
GCGTAGGCGAAGCGTGCGGTCTGCGAGCATGGATCTAATGTACTCTGCCC
ACGATCGCCGGCTCCGTCGCACAAGCTGGCCGCGCGTAACCCTCTGTGGT
TGGAGTTCAGACTCGCCCCCTATTAGAGCCAGCAATACTTGCAACTGTGG
CGCCATCTTCTGTGACTTTTTGGCATACTGGCGCTTCGATGAACGCCTGG
CGGCACTGCTCGGACGAGGGTGCATCGTTTCCTTTGGGAGGCGGACGTTG
TGTTGTGCTCTAGATCTCTTTCTTGAAAGGGGTTGCGCACTGACGGTCTG
AACTGTATCGGCCTGTTTTCGCCTTCGCGGCGCGTTTCAAGGTGTAAGTT
GAGTTATTGTTGCGCCACGTGTCTTACAAGCTTCGTTAATGCAGCGGTAA
AAAAATCGATTTCGATTTTTTTAACTTGGCTAATACATTGTCTTCGGCAA
TACTCCAATGTCTATGGTAATAGCCTCATAGAACCTTGTCTAGCTGTTAC
GATGAGCGGGAGCAGCGCCTGGTGAACAAAAGGGATGCCGAACTGGATCG
TGACGTAAATTTAACGTTGAACGAAACGCGAACCGTGGAACTGAACAAGG
TTTCTCACCCAGTTGAAGAACTCGGATAAGGCCAAATCATGACGCATATC
ATGATGAAAAAATGTTGTCCACATGATATGCGCATTACGGACGCTTGGGT
GAGCCCTCAAGCTGGAGAAAAGCGTTGTCCAGTTTCACAGTTAGCGCGTT
GTATACGTGCAATATATGTTGTGATTCAGTGAGCCTTCCCCCCTGCTGGA
GGTTCGTCCCACCCTGCTTAGTGAGTTCTGGTCGTATTCACCGAGATGCG
CCCCCTACCTGGTGTAGCTAAGTCAACACATGACTAATTATATTCGCGGA
GGGAACCCGACCCTACAGCCCATTCATGACCGACTATTCGTGATGCGCCC
CGGCTTACTGACGCAAGCTGGGACGTGTAGTGGCGACACAGGATAAGATC
CACACCGATGCGTGCGAAGCATATCGGGTTGCTTGCTTTTCCGTATTCTT
GAGAAGGAGTGTTTTGGTAGCGCGAGTAGGTGATGGTGGCGGCGGCGGTG
GCTGTTACCATGTCGTAATGGTGTGTATTTGCGCTCGTAGTTTTTCTTCA
TCTGTTTTGATCCCCAGGAGACCACGGCAATACCGTTTCTGATGGTTATA
TACTGGGAGTGCTTCGTCCACCTTCGGTTCGTCAGCTCTAGTATGATGCT
CCTAGAACTGGGACCATTATTAGCATTCATGTTTTTGACGTTTTTTTATT
GTTTTGTGCAGGATCGTGGTGCCGACCAAGATTTTATTGTTATTTTCTAG
GTTGGACACCCCTCCGGACACACACGACCAAAAATGAAGCACTTTCCCCC
CCCCTAAAGATTCGTTCAGAGGAGCAGCAATTTTATTCGATGTGCCCTGG
AAGGACCTTCTACAGCACGACAACCCCTAAATAACAGTAAGACGGATAGA
GAGGAGGGGCCAACGCTTTGGTCAATGTGCTCGCACATTTTCAACCTTGA
GGCAAGTGTATTCTTCCTGGAGGGTGAATATGAGAACCGAACCGCCAAAC
GTCCTCTTTCTTCAGCTCACCCTTCAACTTCTTCGAAGATCAACCATGGC
TGCTCGTGTACCTCACCCGTTGGCATGCATCACTGCTCCTGCAGCAGAGA
GTGCTCACTTAAATAGATCGATCGAGATGAAACTGACGATACCCTAATTT
GAACGACTCGAAAAATCAATCTACTTGGAATTGTTGAGATTTTCTGTCAT
GCTTGAAAAATCATGGTGATGAAAAGAATCATAACAAAATATGAGATGTA
TATATATATATATATATTTTATTATCTCACAGCGGTTTTGTTGCTTTTTT
GGAAAAACCGTGTACCCTTTTGGTCCCAAAGACAAAATGGCTCCTTTGGG
TTTTACTATTACTCTTGCCTGTCGACGGGTTTTTTTGGAATCGATTTTTG
AATGAGACTGAATTTTGTTGGTCCATGAAGTAGCGCGCCAAAAGTTGGCT
CTATGAACGAGGAAAATCGGGTGTCCCAAAGCTGTGCCCATCGCAACAGG
AAACAAAGCTCGCTCGCGCGATAGCCATTTTGAAGACCTTCTAGGCAGCG
TTGCTGATTATTTAGTCTTTCGCTGAGAGTGCAATGGGGACGCAAGAGGA
AACGAACCTCGGCGTTTCGGAGCACACAGCTGTGATTGCGGAGGCTCCCG
AAGGATGGCAACATAGGCGATTTTGGCGGTTGCTGCTGCCTTTCAGGAGC
TCTGCTATGACAGCTCTTCGCCCCCGAAATGTTTGTGTTTTCTTTTTCAT
ATTTGTTGTCAAGGTTCAATTCAGCAGCACACCTAATCAGCAAGACTGAG
AAAAAGTTCTCCAAGGCTAATAGCACTAGTGATTTTTTTGTTTCTGCAAT
GAAACCAGGGGATGGGATCTGGGTGTCCCCTGTAGTTATCTCGGCTTTTG
TCTTACCTCTTTTTTCCTTGAACGCTATGTACGTGCTTTCGATTTCATCC
ATTCTGGAATACCTGCGTGCTCTCACGGCTGGTTGTGTGAACGAAGCATA
TATCTTGGTTTTTCTTTGCGAGGCTTGAAGTTTGGAATAGAGTCTGTTTT
ATTTTTTTGAAAGGGCCCCTATGTCACACTACTGCACATATTTTTATGTT
AGTTTTTGTGGAAATGTAACGTCACTGTGTAGCTTTCCAAGCATTAGGTT
CATGACGTCTATTGGTAACGGTAATGATCTTTAAAAGATGATCCTGCGTG
AATATGCGGCGCCCAGATCACGCAAGACTCTCGTTTGTCTGTTGAACGTC
AGTACCGCTACCAATAAACAATGAACGTTATGAAGGTGTGTTTGTGACGC
AGTGTGACGTTTTTTTTTTTAGTTTTGGTGAATATACAATATACACATTA
TTGGCTTTTCGCTGCCTCTTTCTGCTGTATGCAAATGAACCTGTGGCGAC
GGTCTCTTTCCTCCCTTCCCCCCGCTGCTCGTCAAAATGGGGAGGATTAT
TTTTTAATGCTGACAAAGCCGCAATTGACCGCGACGATGTTACACAGCGG
TAAAGGCTGGGTTCGTTGGGACGAGCTGCTTTACCAGTTTCGGCGGAGAC
TGGTATTTTTCGACGAAAGCCAACGCCACGCTGTGCTATGCTCTGCTATG
CTGTGGTCTCGTGAGTTGATCTGTGATATTGGAGTCATTTTTCGAGGCAC
TCTCTCGAAGCCGTGCCTATTCAGATATGTCAACAGCGTTAGCTAACTCT
CTTGTCTTGTTTGTTTTTTGTTTTTGCCGATTTGTACGTGGACCCGTCTG
TTCGCTTTCATGAATTATCCATTTTAATCACATAGTTCCTTGTGACAATA
TAGGAGGGGGGTAGATGCCCCTTATCGTAGAACGAGACTCGGTCACCTTC
CACGTTTGAGTTTGGTAATCAATAGGAACGAGCGCTAACGAAACCGATAC
CATACGAAACAAACAACACGAAATAGTACGACATGGAGGCATTAAGGCAC
GGAGGGAGAAGAGGGGAGCGATGAGCATCATCTTGTCGTTCAACCGTTTG
GATATCCGGCACAAACCATCCACTCTACTGAGGTCCGAGTATCCAAATCC
TCTCTAAGGTTGGAACGTTTTGCTGAACAAACAAGACGCCAAACACGCAA
ACGTTGAGCGCTTCTGCAGTCATTTGTCTATGCTGTACCCAGTGATCCTG
TGGCCTCCGACCACCCCCTCTCTACCCCTTAAGCTATTTAGCAGCGTCAG
CTTGCCGAACTCCAAATCCATCACGACACCCACCATAATCACGATGACGC
ATTCAGTAGTAATTTGTCTCGATTGCCTAATGACTTCCGTTCGTATATGT
GTGTGGAACGCCGGGCATATTCGGGTGGCGGGGGGGGGGGGGGGGCAGGT
GTCTTCGGGCGCCGGAATCGTGCACTCTGGAGGAGAGAGCCTGCACACGG
TGACC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2778:5723..11927-

>mRNA_H-paniculata_contig2778.7597.1 ID=mRNA_H-paniculata_contig2778.7597.1|Name=mRNA_H-paniculata_contig2778.7597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig2778:5723..11927- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGGGTTTGAAAAGAAAAAAGAGGCGGGTGACCCGGAGGCGGAACC
CGTGGACGCAGACCCGCGCGATACTACCGAAGAAGACTACCCGAACGGTG
GTTGGCTTGACGATCCCCTATGGAGGGGTTTGAAAAGAAAAAAGAGGCGG
GTGACCCGGAGGCGGAACCCGTGGACGCAGACCCGCGCGATACTACCGAA
GAAGACTACCCGAACGGTGGTTGGCTTGACGATCCCCTCATGGCAAAGTC
GATGGCGGTCAAGAAGTGCGACTTGGACAGGGTTCACCATCTCAACATGA
CCACGAAACGCTTCGCCCGCGAGTACGAGGGCGTGAAGCCCGTCATTATC
GAGGGCTTGGTGGGAGATAAGTGGTCTGCGTCCAGCGCCGGACGGTGGGC
TCAACCAAGCCTCAAAGACTCTTTTGGCCTGTCCCCCATTCATCATGGCA
AAGTCGATGGCGGTCAAGAAGTGCGACTTGGACAGGGTTCACCATCTCAA
CATGACCACGAAACGCTTCGCCCGCGAGTACGAGGGCGTGAAGCCCGTCA
TTATCGAGGGCTTGGTGGGAGATAAGTGGTCTGCGTCCAGCGCCGGACGG
TGGGCTCAACCAAGCCTCAAAGACTCTTTTGGCCTGTCCCCCATTCATGT
GTCTTCGGGCGCCGGAATCGTGCACTCTGGAGGAGAGAGCCTGCACACGG
TGACCGTGTCTTCGGGCGCCGGAATCGTGCACTCTGGAGGAGAGAGCCTG
CACACGGTGACC
back to top