mRNA_H-paniculata_contig2767.7580.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2767.7580.1 vs. uniprot
Match: D7FWD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD3_ECTSI) HSP 1 Score: 580 bits (1496), Expect = 9.000e-191 Identity = 373/734 (50.82%), Postives = 450/734 (61.31%), Query Frame = 1
Query: 124 PTTGP----GIGG--LLGGYLVQRGGVASSYRGVGD--SDHFLGGDGQGGDXXXXXGHVGSQ---GRANERPVTVHQRFNAMVGVQREASTREEEQKAHLLDSFNDDPSLKLHYGLHITLQAVQGESGSFVALDMDTGEVTMRQLHAMQKNQQLTFKLVDLEEPESYRSILYGSSVWLQIIPGPGEPTWKQGGVLGVRVHGPGALPTVGIDANGKVPAPT-AGGAGGSRPNTTGSTASTGNQRSTTSVASAS----PGSNSFDPPGSSTGVTSGGWAEATCVPGGGGVCGGNGNXXXXVAGSRVRSAVGGGNTDEHRQVGIPYPFKAAASKQGDHGGGTNETVLRLMNKSALVNCRWTIRPVLPDGQSVPAKAGGEVSNMDYVYLEQDFFYMTRVSQSRSVVLKALQHGPRLSGGA-------GKGRRRPVRKQYPVERRGIFQMQVADTDELRPGEERSAALMRKAKRGLKRSEARRGGHRTYVHKDRPQDRLTSGAAFPRDIRVRTTHFAADSETKARSTSGRSPASIGNGDGDMYK---GRYRGAVA------------PPPTWIPTASWGTKILQAMSDVARAPVNDRVAANHSRVLRQWRQRCGVPLCSGSYALLASDHTNRDHDELRHRSSTDDGIEGSSNDTDSERE-----------LYSPMCARCR--------------TLEVSSS-----------------ARLMLGRYCLCAVNQEIQREV 2085
P+ GP G GG LLGGY++Q+GG S+RG G S F G DG G GH G Q GRA +RP+++HQ+FNAMVG+QRE+S+REEE +LDS N DPSL+LHYGLH+T QAVQGE+G F++LDM+TG V+M LH +QKN Q+TFK++DLE+PESYRSI YG VWLQI+PGPGEPTW+ G VLG RVHGPG LPTV ID N A + A SRP T+ ST G +R ++ ++S G N+ D PG XX V RV SAVGGGNTD +R VG+PYPFKAA SK G GG NET+LR MNKSA+VNCRWT+RPV DGQS+ K G EVSN+DYVYLEQDFFYMTRVS++ SVVLKAL H R +G G+R +K +PV RRG+F++QVAD DELRPGEERSAALMRKAKRGLKRSEARR GHRTYVHK RPQDRLTSGAAFPR+IRVRTTHF ++S ++A S++ SP G G R V+ W+ SWGT +LQAM+D ARA V A+H+RVLR+W+QR G PL G+ A DH++R G G S+D++ E E L SPMC+RCR T+ SS A + LGRYCLC VN+EIQ EV
Sbjct: 172 PSKGPPAPLGRGGSSLLGGYVIQQGG---SFRGGGGEASGLFPGADGLAGGGRGTSGHGGQQASWGRAGDRPMSLHQKFNAMVGIQRESSSREEE-GTQVLDSLNHDPSLRLHYGLHVTFQAVQGENGYFMSLDMETGGVSMIPLHELQKNNQVTFKMIDLEDPESYRSIFYGKPVWLQIVPGPGEPTWRDGSVLGARVHGPGMLPTVVIDPNDAAAASSMAHQTAHSRPGTSESTPGPGTRRPVSTHGASSGRGNTGWNARDSPGXXXXXXXXXXXXXXXXXXX------XXXXXEVVGAGRVSSAVGGGNTDANRPVGVPYPFKAAGSKHGGAGGTANETLLRAMNKSAIVNCRWTVRPVRSDGQSLLGKDGKEVSNLDYVYLEQDFFYMTRVSENASVVLKALSHNNRSAGXXXXXXXXXASGKRGTAQKHHPVGRRGVFKLQVADADELRPGEERSAALMRKAKRGLKRSEARRSGHRTYVHKQRPQDRLTSGAAFPREIRVRTTHFVSESASRAISSASHSPHRGGGAXXXXXXXVVGYSRSGVSLGGSWDGFGDGGGGSAWLSAGSWGTDVLQAMTDFARAGAERGVTASHARVLREWKQRWG-PL--GTIWSQADDHSSR-------------GTTGDSSDSNGEGEDGGGDEGHGWSLVSPMCSRCRYLTAHPLTPPPPAGTIGTCSSRSLSXXXXXXXXXXXDEAEVTLGRYCLCTVNREIQTEV 879
BLAST of mRNA_H-paniculata_contig2767.7580.1 vs. uniprot
Match: A0A7S3JQ49_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQ49_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 4.360e-10 Identity = 76/291 (26.12%), Postives = 118/291 (40.55%), Query Frame = 1
Query: 400 FNDDPSLKLHYGLHITLQAVQGESGSFVALDMDT---GEVTMRQLHAMQKNQQLTFKLVDLEEPESYRSILYGSSVWLQIIPGPGEPTWKQGGVLGVRVHGPGALPTVGIDANGKVPAPTAGGAGGSRPNTTGSTASTGNQRSTTSVASASPGSNSFDPPGSSTGVTSGGWAEATCVPGGGGVCGGNGNXXXXVAGSRVRSAVGGGNTDEHRQVGIPYPFKAAASK----QGDHGGGTNETVLRLMNKSALVNCRWTIRPVLPDGQSVPAKAGGEVSNMDYVYLEQDFFYM 1251
FN + + +LHYG I L+++ +G FVA+ G + R A + FKL++LE+P S +++ YG VWLQI G GEP+W+ G V+G RV +LP V I + + N T + + + D P + ++ S + VGIP P +A K + + +E +R N++A V RW + P + + + GG V N D +YLEQDFFY+
Sbjct: 134 FNRNFNTRLHYGSTIALESIV--NGEFVAVGSGPRLEGYMNSRLPEACNYDTVFLFKLIELEDPCSAKAVQYGDHVWLQIHGGNGEPSWRNGSVIGARVREAVSLPIVPIALSNE------------------------NLSCTKNTSPIKVHTIQKDEP--------------------------------VIEKEQIMSV--------QKMVGIPAPVRATLPKAQICKDEITFSFHEMHMR--NRNACVIGRWRVLPATDESAARAEERGGYVYNNDPIYLEQDFFYI 356 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2767.7580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2767.7580.1 >prot_H-paniculata_contig2767.7580.1 ID=prot_H-paniculata_contig2767.7580.1|Name=mRNA_H-paniculata_contig2767.7580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=705bp KNSNSQVPSPKMAASASVSMSAYKRRGVRRPRAATSQGRKRPTTGPGIGGback to top mRNA from alignment at H-paniculata_contig2767:12595..19702+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2767.7580.1 ID=mRNA_H-paniculata_contig2767.7580.1|Name=mRNA_H-paniculata_contig2767.7580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7108bp|location=Sequence derived from alignment at H-paniculata_contig2767:12595..19702+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2767:12595..19702+ >mRNA_H-paniculata_contig2767.7580.1 ID=mRNA_H-paniculata_contig2767.7580.1|Name=mRNA_H-paniculata_contig2767.7580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4230bp|location=Sequence derived from alignment at H-paniculata_contig2767:12595..19702+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |