mRNA_H-paniculata_contig2766.7575.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2766.7575.1
Unique NamemRNA_H-paniculata_contig2766.7575.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2766.7575.1 vs. uniprot
Match: A0A835Z4N5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N5_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.160e-21
Identity = 58/122 (47.54%), Postives = 85/122 (69.67%), Query Frame = 1 
Query:    4 GGGGDNGARIDAQTIQEFQELSEAVGGTKRELAEVEAQLQTCLREQKRGALTRGELNRVGDGAQMYQSVGKMFLSQGKAEITAMLDAQQSDKNNSASQLEAKQSYLQKRLASQQGNLEEIIK 369
            GGGG  G  +D QT +E +ELS+    T+RELAEV A LQ CLR+Q+R  LT+ E+  +G  A++Y+SVGK+F+   K EI  +LDAQ +++  S  QL+ K++YL+ RL SQ+ NL E+++
Sbjct:  136 GGGGAPGG-LDKQTFEEIRELSDQSEVTQRELAEVSANLQGCLRDQRRAQLTKTEVAGLGGDARLYRSVGKVFMLNSKKEIDTLLDAQATERAKSEEQLKGKKAYLENRLNSQKTNLNELLR 256
[Close]
BLAST of mRNA_H-paniculata_contig2766.7575.1 vs. uniprot
Match: A0A7S2LG90_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LG90_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.880e-10
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = 1 
Query:   52 EFQELSEAVGGTKRELAEVEAQLQTCLREQKRGALTRGELNRV----GDGAQMYQSVGKMFLSQGKAEITAMLDAQQSDKNNSASQLEAKQSYLQKRLASQQGNLEEII 366
            E +EL E    T REL  + + +Q   REQK   +T GE+N++     DG  +Y+ VGKMF+   + E+   L    +D     S L  K+ YLQKR++SQQ NL+E+I
Sbjct:  159 EIRELQEQYVATNRELQIINSNIQKSQREQKLADITLGEINKMTSGDDDGRNLYRGVGKMFMLSSRPEVLDHLKKSTADAKKDESDLIQKRVYLQKRISSQQQNLQELI 267
[Close]
BLAST of mRNA_H-paniculata_contig2766.7575.1 vs. uniprot
Match: A0A1Y2GF64_9FUNG (Prefoldin n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GF64_9FUNG)

HSP 1 Score: 57.0 bits (136), Expect = 1.710e-6
Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:   91 RELAEVEAQLQTCLREQKRGALTRGELNRVGDGAQMYQSVGKMFLSQGKAEITAMLDAQQSDKNNSASQLEAKQSYLQKRLASQQGNLEEIIKNIQ-AQGS 390
            R +A V+AQ+Q   RE+K   LT  EL+ +      Y+SVGKMF+ +   ++T  L  +  D       L+ K+ Y ++     QGNL+E+I+ IQ AQG+
Sbjct:   24 RMVASVQAQIQAREREKKLSELTNKELSSLQADTVTYKSVGKMFVQEPLNDLTKELSERAKDMTKELEALDKKRIYWERNKTEAQGNLQELIRQIQQAQGA 124
[Close]
BLAST of mRNA_H-paniculata_contig2766.7575.1 vs. uniprot
Match: A0A197JTZ8_9FUNG (Prefoldin beta-like protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JTZ8_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 8.080e-6
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:   91 RELAEVEAQLQTCLREQKRGALTRGELNRVGDGAQMYQSVGKMFLSQGKAEITAMLDAQQSDKNNSASQLEAKQSYLQKRLASQQGNLEEIIKNIQ 378
            R +A V+AQ+Q+  RE++   LT  EL+ +      Y+SVGKMF+ +   E+T  L  + ++ +   + LE K+ Y ++     QGNL E+++ IQ
Sbjct:   24 RMVASVQAQIQSREREKRLSELTNKELSALQPDTVTYKSVGKMFVQEPLPELTKELTERATEMDKDMAALEKKRIYWERNKTEAQGNLGELVRQIQ 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2766.7575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z4N5_9STRA3.160e-2147.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2LG90_9STRA5.880e-1039.45Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A1Y2GF64_9FUNG1.710e-636.63Prefoldin n=1 Tax=Lobosporangium transversale TaxI... [more]
A0A197JTZ8_9FUNG8.080e-634.38Prefoldin beta-like protein n=1 Tax=Linnemannia el... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2766contigH-paniculata_contig2766:817..10334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue5.7e-09
Seed eggNOG ortholog67593.Physo141795
KEGG koko:K09553
KEGG Pathwayko05020,map05020
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Prefoldin subunit
EggNOG OGs3Q8BF@4776,COG0457@1,KOG0548@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-15_003030.1
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons4
Model size1163
Cds size396
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2766.7575.1prot_H-paniculata_contig2766.7575.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2766 1584..10334 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929837.0607793-UTR-H-paniculata_contig2766:816..15831622929837.0607793-UTR-H-paniculata_contig2766:816..1583Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2766 817..1583 -
1691481032.805739-UTR-H-paniculata_contig2766:816..15831691481032.805739-UTR-H-paniculata_contig2766:816..1583Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2766 817..1583 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929837.0833564-CDS-H-paniculata_contig2766:1583..16761622929837.0833564-CDS-H-paniculata_contig2766:1583..1676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2766 1584..1676 -
1691481032.8188267-CDS-H-paniculata_contig2766:1583..16761691481032.8188267-CDS-H-paniculata_contig2766:1583..1676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2766 1584..1676 -
1622929837.099182-CDS-H-paniculata_contig2766:7945..80371622929837.099182-CDS-H-paniculata_contig2766:7945..8037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2766 7946..8037 -
1691481032.8278363-CDS-H-paniculata_contig2766:7945..80371691481032.8278363-CDS-H-paniculata_contig2766:7945..8037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2766 7946..8037 -
1622929837.1165128-CDS-H-paniculata_contig2766:8340..84971622929837.1165128-CDS-H-paniculata_contig2766:8340..8497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2766 8341..8497 -
1691481032.836056-CDS-H-paniculata_contig2766:8340..84971691481032.836056-CDS-H-paniculata_contig2766:8340..8497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2766 8341..8497 -
1622929837.1369777-CDS-H-paniculata_contig2766:10280..103341622929837.1369777-CDS-H-paniculata_contig2766:10280..10334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2766 10281..10334 -
1691481032.844589-CDS-H-paniculata_contig2766:10280..103341691481032.844589-CDS-H-paniculata_contig2766:10280..10334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2766 10281..10334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2766.7575.1

>prot_H-paniculata_contig2766.7575.1 ID=prot_H-paniculata_contig2766.7575.1|Name=mRNA_H-paniculata_contig2766.7575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
GGGGGDNGARIDAQTIQEFQELSEAVGGTKRELAEVEAQLQTCLREQKRG
ALTRGELNRVGDGAQMYQSVGKMFLSQGKAEITAMLDAQQSDKNNSASQL
EAKQSYLQKRLASQQGNLEEIIKNIQAQGSA*
back to top

mRNA from alignment at H-paniculata_contig2766:817..10334-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2766.7575.1 ID=mRNA_H-paniculata_contig2766.7575.1|Name=mRNA_H-paniculata_contig2766.7575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9518bp|location=Sequence derived from alignment at H-paniculata_contig2766:817..10334- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGCGGGGGGGGGGACAACGGTGCGCGGATCGACGCTCAGACCATCCA
AGAGGTGAGGAGAGGGCTTTGGTGCAATTGCCCCAGCGATATGTGGCAGA
CTTGGATGATGGCGCATGGTGATACCACACATGGCCGTTTGTTGGCTTGC
AGTTTGTTGTCCACGAGGAAAACAGTGGCCTGGTCTGTTGTTAATTTCTT
GCGTTTTTTGGAAATATATATATATATATGTATATGTATCATCTCCTATT
TTTTCTTTTGGCTTTTTTTGCTCTTCAGTACTGTGCGTACATGTAGAGTT
TAACTGTTCCGAAGTGACGACTTTATGTGTTACAGTGTGCTGAGGACAGT
GATGACGTGGGGGTGATTTATTTGGGTGCGTGCTATAATAAACAGCGTAT
CTCGTTGTTTTAGGAATGAGGTTCTCTTTCTCTCTCTCTCTCTCTCGGGC
AATTTTTTATTTGGAAGTGCTCGGAAAACACGTGAGTACATGCATGTAAG
GTTGACCTTTCGGATAAATGAGTTATCACCTACCCTGCAAATTTACATTT
TGCATCACTCGGGAATTAATTGAAACCTTGAACCGTAGCAGCACCACTTG
GTCATAGTTATTCATATACTTGATGGAGTATATAAGAAAACTTTAGCAGC
AAAGATTCTCAAGGAGTGACGGGGTTCGTAGGGGTTAATTGTGCCACGGA
TATGCGAAATTTGCGCCCCCTTCTCTCCCGAGGCAGAATGAGGAAATCGA
GCACTGTGTTTCTCGTCAGTGCTCCAGTAGGTGATGACTATGCGGTTGGA
GGAGCTTAGAGGGCATCGACATTTTTATTTGTTTATTTTTTATTGAATGC
AAGCTAGTCTTTAGAGGAAAAGGATTAATCGAACTTGGGCCCTTCCCTGA
GATTTGATCATCTGGAACGAGTGTTTAGGTTCTTTAAATTTAGAAGACAA
AAGTGAATGTCTCAAGACAAAGTAGTAGTCGCATAGATTGGGTGTTATTA
TCCACACGCTAGGAAGAGGGGCGCCTGCGAGAGAGCGCACATGATTGTGA
CGTATTCGTTCCGTTGGGCAGACAAGACCGGGGTTGGCTAGACGGACGCT
CCTCGACGACGGGATCAATGCATGCAAGTCGGTTCGGGTTGAGGGCATTT
GGATTTTTCATGTGGTTTTATACAGAGCGTTTGGCGTTTTCTTAGAAATA
CGTGATGTGGCCCCATTCAGAGGTAATAACCGTCTGTTTTCTTAATACCT
TGTCCTAGCCTGGGAACGGGAAAGCGTGGCAAAAAATAGCTTTCTGAGTC
GTTCATCGAAGAAAACAATGCAAGAAGCATATACTTTCGCTGAAGAGAAT
AGATCACCCGACTCGACACCCTCTCCATTTTTAAGAGCACTTCAGATACA
TGGTTTGCAAGGGTCTGCGGTCCGTCCTGACTCTGAACCGTTTAGCGCGA
CTCATCTTTTGGGACATTTTACCGCGGACGCTGTTGTAGATACAGATATG
AATCAAGTGCATTAAGCTCTCAACCGTGGATAAGGACCACAAGATCCTCA
AGTTGTGGCTGAAAGGTTGATGATGATTTTTTTTTTTTGCTGTCGAAAAA
TTCAAAAGAGCGGGAAAAAATATAGTTGAAATTAATCTGGAATGTGTTCC
TTGCCAAACCCCCCCCCTCCCTTCCTCCCTCCCTCCCACCTACTCCCCCC
TGGTTGAAGAAGGAAGTCGATAAATATGCAAGAGAACAAATGATTTCAAA
AACCTATGTGGTCTAGAAATTTAGATACCGACACAAACGTGCTGTCTGTA
TAATTTGTTTTTCTCGGGCTACGCTGCTCATGAGCAGTTTCAAGAGCTTT
CCGAGGCCGTTGGAGGGACTAAGCGGGAACTGGCCGAAGTGGAGGCCCAG
CTGCAGACCTGTCTCAGGGAGCAAAAGCGCGGAGCCTTGACGCGAGGAGA
GTTGAACAGGGTTGGCGACGGCGCGCAGATGTATCAGAGCGTTGGTGAGA
CTGCGGTTGAACCTAATCCCTGCGCCCGGCCGTAACTCTAATAGGACAGT
TGACGGAAGAGGGAAGGTTGGTTTGTGTTTTGTACAATTTGAGTAGCCAC
TGGTACTTTGCCTTTTGTTTCGTTTTCCCATCATAGTTGCGCGACAAATG
CTGGAGCATGACCACCCCCCCGACGATTTTGTTCACTTGCCGGTTTTGAT
TTACTTCATCACACGCCTACCCCCACCCCACCTTTCACTCCCCCGCCGAT
GCCGACGCTTCGGGAATTGCACCGCTAAACACGGGACCAATTTTCAGGGA
AGATGTTCCTGTCACAGGGTAAAGCGGAGATCACGGCCATGTTGGACGCC
CAACAATCAGACAAGAACAATTCGGCGAGTCAGCTTGAGGTGAGGAAATG
AGGTGGTGCAGGAGTGTTTTCGAGGGTATGCTGACCTTGGAACGCAGAGG
GCGAGAGGAGCGCAAGGGAATCAGCACCCAATCAGCGCTTTCCCTCCTTT
TCCTCATGAGTGTGTTCGATGAACAAAAACAGAAAAGGTGTGTATCGTTT
GATTTATGCAGCTATACTATACTCCCTCTGTCCCATACGTGTGGCCTGTT
GCGGAAAGACACATGCAATGTTTGATGTGTAGATGCCTTCTGCATGTGCG
ATCGCTCTTAATAAGAGTTGGTGATTCATACTGTCTCCCGTATTGTATAC
CTCAGATCACCATGTTCGTTCGTCGAAAGGTTCAATTAGCCGAACCGCAA
TCGAGAGGTTGCTTTACGAACTCTTCCAATTTTGCCACAACTTGTGGGGA
ATTCTCGAATTTTCCAAAACTAATTCTTCGGTAATGCTTTCCGCCCCTTT
CACGTGTCGCAATGCCACACACGAGAGGCGCACACCGTGTGCACACCACG
ACCGGAGAATTGCTATATACTAGTACTGCCATTAATCTAGGAGATTCAAA
AGAGACGCGTTTTTCCTCCAGAAAGGTTTTATTCGTCTCTCACCAAGTGT
ACAAGGGCTATAGCGTATTCAACCGTCCTCAAAATGAACGATTTTGTGGT
GTTTTGTATAGGTGATCGAAGTGTGTGATTGAAGTGATGTTTTTGTATAG
GTCGGCGAAGGCCACAAACCTACGCCCGAACGGGTAGGGTAGCTCGTGAA
CTGAGCATGACTGGAAGTCTAGTCAGAGGTCTTTTAGTGGGTGCAACCCC
CACACTGCCTACTTGGTTCGGCCGAGCCGGGGTGGTGCCTACCCCGCAGG
GGAGTAAATAGCTCTGTTCTGTTAAAAGGAAATGTAGAAATACTTCGATA
GAAATACTGAAATATGGAAGCATCGGATAAAGGTTTTTGCCTCTTCCCGG
GGTTAAAAAAACAAATAAGAAGGTCGGCGAAGTCGATCGGTATACCGATG
TGTTACCGATATCGAAATCGACCCAGTAGTTCCACGGGAAAACAACTTCA
GCATGTATGCAACATTGGGCAGTGCATGTAGGATGCGGGGCAAAAACATG
GCCATATCGAGTCGACCGTCGATAGATGGATAGATAGAGTTAAATGCACC
GTTTGAGGGGTGCTTGAGGTAGCTCGCGCGCAATATCCTCCTTTGTGGGA
AACTGCGACGAGTTAGAGGATGCTGAAGAAATCTCGTGATTGCTAAGACC
AAAACCCACCTCGGGGTCCTATTAACAAAAATGGTGGAGATAGAGCCGCT
CAAGTGTGGCGCTTGTGCCAATCGAAAAAGAGCGCTAAGAAGCAAAGTGT
CCCTATTAAGGGAAAAAATTCAAATGGAGATTACCGACGTCATGAGAATC
GCCACGACCTATTCTTAGGCACAGGCGCCGATGGATAGACACTGATTCTA
ATAAAAAGAAAAAAGAAAAAAAGGATCCGGGGACGAAATCGCCTCATCCC
CGGGGAGTCTTGTTTCAGCTTATTTACATGCCAAATTTCGAGCGGCGCGT
GCTAGACCGGCACACGTTTTGTGTTCTTTTTCATTTTTTTTCAGTCTTAA
TATTGCAAAAACACCGTCCATGTAGGTTCTCACTGAAATCGGAGTTGTTG
GGAAGGTTTTTTGGCTGGCATACGGCACGAACACAGGTTGGGGTAAAGGA
ACTGTACGTACATTTCTTTGGATTCAAGATGAATCGCACCTGTCGTGTCA
CTTAACGTCTTGGAGGATCTTGCTGACCGGTTGTCTGAGCCATGGTATCG
AAGTGATCAAATCGCACCCTCTGTTTCTTTACGCCAGCCTGCCTGTGGGC
AATAACCTAATGTATTGCAGCAACATAGCTAGCCCTTAGATTACCCGCTC
CGGCAGACACGCTACGCTGCCAACGGGCGAACAGATCCACTTGTCGATTC
AGAAATAGAACAACCTTCTCCTGATCAGCTGGCGCCGTCGACGCAACACG
GGTTCATCTCGGCCGCGCCGACGTCGCATCCGCCCCTCCCTGGCGGCCGT
CTGCAGCTGAACTGGGAGCTTCCTCCCTCCCGCCACTTGCCGTGGCGAGC
GTACCACGTCCACCTCCACGGCCGCAGCCTCTTCCTCCTCGCCCAACCTC
GCTGCCTGCCCCCTGCAAAGACTGCTCGGAGGATTTTTCCCTGGTCGCTC
GTTTCGCCGCCCGTGCGTCAGCACGTTGTTTCTTCAGTCGTTCCTGTTTC
GTTTTCCGGCTGGCATCGTCATGGTATTTGCTGAGGATTTTGTCGCTGGA
GACAAGTCTCCCGTTTGCGATTCCGGTCGCACTCCATGAGCTTGCCGGAC
GCGTTACCCGCTCCTGAGCGTGGAGGAATGAGCCCAACATGACCGTGCTA
ATCCTGACGAGGGTCGTGGTAACGCCTTGGGCTTGCAACGTCCGCACAGC
ACGGGCACCGAGCGACCTCTTTAGCTCATCCTTGCTAACGGCCACGGGTA
TGTTGATGAACAGTGGGTGATCGTCAGATCCGGCCTTTCTTTTCCCGGTT
CCTTTGAGCCTGTTCAAAGCAAGCGGCATGTCGACTCGCACGTTTGCTAC
GTTCTACGGTGAAACCCCTTCGCCTGTTTGCCTGTTTCGTCAGTGTTCTA
AACATGATCCACCGCCGACTGCAGGTCGACCAACGTTTTTGCCAGATAGC
ATAGAATTAATTATCTTAATCGAGGGGTCGTCGTCGGCCGTGACCCTTTT
TGAGTCGTAGATACGGCTGCGGCGTTCGGAGAGATGAAAGTGCCCCTTGA
AGTAGCCCTCGACCCAATCCACGGGACGCCAATCGTTGTAGAGCACACTG
ACACACTCTACTAGCTCCGCTCTACCTACCCCCAGGTAATGGGCGACAGT
CCACAACAGTGAGGTTTCGATGAAATCTTGTTCCTCCATCGTGAATCCGG
TGGGTGCCTCACTTCATGCCCACCGGACCATTTAGAAGACTGTTTATACT
ATTTCTTGAGATTCCGAAGGTAGTGGCTGCCTGCTGGTAAGACATCTGAT
CGCTTTGCGCCGCGTTAGCGGCGGCTTGCGCATTCGCAAGGTCTACCTTG
CGCCGAAGTATGCTTAGCAAACAGTGTTGGCGATATGAGTGATTATCTAG
GGCATGGCGCATTACTCATACCCGAAAAATAAACATGGGTTAAAAACCCC
CCCAAAAAAACAAAAAAAAACACACCTAGTGACTGATCAAGATGTCGTTT
TTTGTTTTGTTTTGTTTTGCAAATGTCAAACGTTTTGGTACGTGTATTCG
AAATTACAGTAGTTGGCATGCTGAAGGAGCAGCTTCAAATCTTGGAACAT
TTTTTTCCAATAAATTTAGGGGGTGACGCATTGTGCTGTTTCTCCGGCTA
GAGGATGACGTTTCTCCCACGGATGGGCTCCAACGATGCGCACGGTTGCT
GTGAAAACGATCCTGTATCCAGAAAATAGTGTAAATATATTTTCGTAGGA
GTTACTGTGGCTCATGTCTTGGCGACCAGGTGAACACTTTTCGAAAACGA
AAAAACGATGTTTTTACTTGTCGTGATATATCTTGCTGCTGGTGATTTCG
TTTCATAACACAAGTGGGCGCAAACGGCGCATGGGGATATAGGTGAAGAA
GATAAGAGACGAAAATGGATTTAAACCATTGCACGAAATTACAGTGTCTT
GTGAAAACAACAGTCCCTTATTGTGGATTGTTCCTTATTTTGAGATATTT
ACCTCTGTATTTTTCCATCTATTGGCTGAGATATCGACATACTCCTTTCG
TCGGTTCAATTTTTATACCCATCGTGCAACCCCCAAACAAATACGGATCA
ATACTCGCCTGAAGGAAAATAATAAAAATAAGAACATTCGCTTGAAGATT
CAGCACGAGCACGTTTGTTTTGTGTACCGTTGGATCATTCTTCTACGACA
GCTTCGAATAATAGCAAAAAGCGAATAAGTCACCTGGGCGCATGGAAGCA
TCGGATAGAGGTGTTTTGCCCTAGACTTCCGAGGGTTAAAAAAAACCAAA
ACTGGGCGCATACGTGGTGTATTTTCTTCCCGAATGTTGCAAATTGTCGT
ACTTCTTCCCGGGGGGGGGGTGCAATGGTTACGATTTCACCAGTCCTGCC
TACCACAGGAAAATTCCACCGATGGAGAAGCGGTAAATATCCCCCTACCT
GTACCAAAATTGGGAAATTTCAAGGTAACGACAAAGTCCCCATTATTTGT
TACTTGGATTGGAACTTACGGATAAAGACGATTGGACTCGACGCACAATT
GCGTTATGCAGGAGTTAGGAGAGATAGGCACCTGCCCCTTTAAGGTATCG
CACCCCGGGGATGCTTTCAGTGATGAGCCCGACGTACGGGAACAGCGGTA
GTTATCACTTTCACGAGAACTATCATTTTTTGCTATGTATATGCGTTACA
CATGCACACCCCCCGGGCGCTTTCTGTGGCTTCTGCTTTTGAGTACTCAA
TAGCAAAAACAACAGGTAGACAATCAAGTGTTTTTTTCACTCGTGTCTCG
TTGCGTTGCCTCTTCCTGTGTACTGCACTCTTGTTGTGATTGTGTGCAGT
GGTGTGTCGCCGTGTAAGCTACACGCTACTTTCGTATTCTCGCTTTGATT
CTCTCTTCTTTTCTTGTAGCCTATTCGAGTGCGCAATTGTTTTTGCAAGG
GTTCTCATGCAGTGTAGCGCGTAAGCCATATTCCCAAGAGGTGCATCATG
GGCTTTAGGGGGCCTAGGGTGTAGGGAGGGTGGGGGGTTGTTATGGTGGT
GTACGATGTTAACATGCAGTACTTCACGGGATGTCGTTGTTATCCATCGT
TCTGAGCCACCGGGCTGTTTGGGGGGACGTAGGTCAAGGAAAATCACTTG
AAGCTCATGTCAGAGGGTGGCGGGTAGTAGTACGGACGGCGTCGGCGGGA
GAGTGCAGCAGTGGGACCCCTGCGAGGCAAAACGTGTCGTGAGAGAAAGT
TCATGTCAAAAACGTCATTTTCCAATGTTGAGTGGATAACATGAAACTGT
TGGACGGCGCCCACGCCTATCTCGTTCTCTTGAAAATAGCAGTCCATCTA
TGGGGTACCTGGTAAGTTGTATATACAAAAAAAATTACCGGAACACCCTC
GAGTGTCGCATCCCTTGACATTTTTTGCAGTATATAAAGGGTTGAGTTTG
GCAGAGCACATCTCCAGATTTAAAACTGTTCAAAAAGCTGCAGATGGAAT
CTTTTGAAAGGATTAAAGGTTGCTCAAGGTTGGGATAATTTTTTCAATTG
GAAAACTCGAAAAGGGGTAAGAGGTGACCTCTTTTCGGTTGCGTCTTTTT
TTTTTGCATCACATACGCACCCGGTGGACTTCGCCAATCTCCGAAAAATA
TCTGATTGCAATCCTTAAGACATGTAGAACCCTAATGAAAAAATCAAATG
TACAATTTCAGAGATTCAAGCTTCTTTACATATCGTGGTTACCTTTGGTT
GTGGCACAGAGGGAGTATACGAAGAACAGTAATTTAGAACCCTGCTGGAG
ATTGTTCGTGCCCTCCTGTTTTTCTGTTGCAGTGTTCGAGTTGGGTGGCA
GATGAGCATGCATACACCTGCACACCTGTCAAGAGTCAGTTTTGTATCCT
CTTTCCGACCTCCGGGTCGGCGCTGTCAGCAAATGATCGTGTGGCGCAAT
TAGATCTTCCGGGCGGAATACATGCAGCAATATCAATACATCGCGATGTC
AGAAACGATTTGTTATACTCGTAGCAAAATTTCCAAGTAGTTGTGGTCCC
GCAACGGATCTTGGTCGTGCTCTCTGCGCTTGAATTATTTCCTGCCCTGT
TCTCGTGCATGTGCTACACACGTGGACCTGTACAGTTGAGCCTAACACGT
TGCCTAGATGACACAGAAGAGGAGAACACATATTGACGCAAGTGCGTTGA
GAGGGTACGTGCGGTAGGGGGTTGTGGTGTGGATCAAATGTTGCTTTGTC
TGAGCCCCCTTGGTTTCCGTTCGGTTTCGAGCAATGCCCCTGGTGCTGCA
GGGCCAGTAGTGTCTACTCTTTGGCCTGTACATTTGAAGAAAGACTAGGC
TGACGTGATGTCACGCCGGAAATCGAGCACGCTGCATTGTGAACGGCGAT
TTGGTTGAGTTTATGTGTTCCCTCACCCCAAAACAGGTAGATTTAAGCGT
ATATCAATTTCCCTCGCTGTCCCCACTGTTTTTTTGTTGTTGTTTGACTT
TGACTCAGGCAAAGCAGTCGTACCTGCAGAAGCGATTGGCTTCGCAACAG
GGAAATCTGGAGGAGATAATAAAAAACATACAAGCCCAGGGGTCGGCGTG
ATGAATCCACAGCGACTGTATTTGCGCTCCACAGTACACCTATCTGCACT
TGCTCGAACAAGTGTACCCACTATTCTGTAGACGGATTGTTTGATCGCCG
ACCACGCGTAAGAGCAGAGGGAGAACGGAGGCAGTAGTATGTGGACTTGG
CGGGTGACCACTTTTTGTAGTTTTTACTTTTGTAGAGACGCACGTATACT
CGCAAGAATATCGGTATGCCGTTTAGCAGACTCAACGGCACTTTGCTGGA
CCACGTCGATTCATCTACTAGTCGAAGAGCGATCGAGAGTTCCTTACGCC
GAACTGACATACAATCGAGGGCCACGACATCTAAACACTGAGCCAATTTG
TCCAACGCGCTAGGGGCGTTGCCTCGAATACAAGTACGGACCAGTCTTTG
AGATATCTTCTGCCGTAGCAATAGGCTCTGCAAGCACTGCCGCGCTGTCA
CCTCCTCGGGGTGTTAGCAGTGTCAGTGTAGCGTCATAGCGGTAATTCTG
TTCCGTGGGGTTCTTATGGGGACGGGAATGCGTATTCTTTGGTGTCTGTG
TTGACTACACAACCCCCAAGCCCCGCTCAGTTGGGTAAAATTTGTCGATG
GATATGTAGCCATGGTTATGGGCTCTTTGACGAGGGCGCCGGGGCTGCCT
TGGATAAACATTTGTTCTTCACATGAAATACAGCACGATGCTTTAGACGA
CGTCTGATCGAATTAGCGTTGAAAGTTAATATTGAAAAATGCCGATCATA
AATGGACAAGCAATGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2766:817..10334-

>mRNA_H-paniculata_contig2766.7575.1 ID=mRNA_H-paniculata_contig2766.7575.1|Name=mRNA_H-paniculata_contig2766.7575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig2766:817..10334- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGCGGGGGGGGGGACAACGGTGCGCGGATCGACGCTCAGACCATCCA
AGAGGGCGGCGGGGGGGGGGACAACGGTGCGCGGATCGACGCTCAGACCA
TCCAAGAGTTTCAAGAGCTTTCCGAGGCCGTTGGAGGGACTAAGCGGGAA
CTGGCCGAAGTGGAGGCCCAGCTGCAGACCTGTCTCAGGGAGCAAAAGCG
CGGAGCCTTGACGCGAGGAGAGTTGAACAGGGTTGGCGACGGCGCGCAGA
TGTATCAGAGCGTTGTTTCAAGAGCTTTCCGAGGCCGTTGGAGGGACTAA
GCGGGAACTGGCCGAAGTGGAGGCCCAGCTGCAGACCTGTCTCAGGGAGC
AAAAGCGCGGAGCCTTGACGCGAGGAGAGTTGAACAGGGTTGGCGACGGC
GCGCAGATGTATCAGAGCGTTGGGAAGATGTTCCTGTCACAGGGTAAAGC
GGAGATCACGGCCATGTTGGACGCCCAACAATCAGACAAGAACAATTCGG
CGAGTCAGCTTGAGGGAAGATGTTCCTGTCACAGGGTAAAGCGGAGATCA
CGGCCATGTTGGACGCCCAACAATCAGACAAGAACAATTCGGCGAGTCAG
CTTGAGGCAAAGCAGTCGTACCTGCAGAAGCGATTGGCTTCGCAACAGGG
AAATCTGGAGGAGATAATAAAAAACATACAAGCCCAGGGGTCGGCGTGAG
CAAAGCAGTCGTACCTGCAGAAGCGATTGGCTTCGCAACAGGGAAATCTG
GAGGAGATAATAAAAAACATACAAGCCCAGGGGTCGGCGTGA
back to top