mRNA_H-paniculata_contig27633.7567.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27633.7567.1
Unique NamemRNA_H-paniculata_contig27633.7567.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27633.7567.1 vs. uniprot
Match: D8LK77_ECTSI (Indole-3-glycerol-phosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK77_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 3.210e-36
Identity = 76/116 (65.52%), Postives = 87/116 (75.00%), Query Frame = 1
Query:    1 DIAEAKLKVSEKDLVKAIAAFDKEHGDPIDLFVRIAGVREAYPDMAIAAEFKRASPSKQDIAVGVVAGEQAVLYASAGAAVLSVLTEPKWFKGSLQDMKEVRLATQGFKEGRRKRR 348
            D+AEAK +VSE +L K +  F   +G PIDLF RI       P+MAIAAEFKRASPSK DIAVG+ AGEQ  LYAS GAAVLSVLTEPKWFKGSL DMKEVR+AT   +EG+ + R
Sbjct:   95 DVAEAKARVSETELRKQMDDFAAMNGGPIDLFYRITSEE---PEMAIAAEFKRASPSKGDIAVGLRAGEQGYLYASVGAAVLSVLTEPKWFKGSLADMKEVRVATNKMREGKAENR 207          
BLAST of mRNA_H-paniculata_contig27633.7567.1 vs. uniprot
Match: A0A835YVM1_9STRA (Indole-3-glycerol phosphate synthase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM1_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.140e-31
Identity = 72/113 (63.72%), Postives = 85/113 (75.22%), Query Frame = 1
Query:    1 DIAEAKLKVSEKDLVKAIAAFDKEHGDPIDLFVRIAGVREAYPDMAIAAEFKRASPSKQDIAVGVVAGEQAVLYASAGAAVLSVLTEPKWFKGSLQDMKEVRLATQGFKEGRR 339
            D+ EA+  VSE  L+  IA+FD +HG P+DL+ RIA   +  P MAIAAEFKRASPSK DIA G+VA EQ +LYAS GAAVLSVLTEP WFKG++QDM+EVR ATQ   E  R
Sbjct:   46 DVEEARHLVSEATLLSQIASFDAQHGAPLDLYERIA---QTEPQMAIAAEFKRASPSKGDIAPGMVAAEQGLLYASVGAAVLSVLTEPFWFKGTVQDMREVREATQAQAEASR 155          
BLAST of mRNA_H-paniculata_contig27633.7567.1 vs. uniprot
Match: W7TZP3_9STRA (Anthranilate synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZP3_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.230e-26
Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = 1
Query:    1 DIAEAKLKVSEKDLVKAIAAFDKEHGDPIDLFVRIAGVREAYPDMAIAAEFKRASPSKQDIAVGVVAGEQAVLYASAGAAVLSVLTEPKWFKGSLQDMKEVRLATQ 318
            D+  A+ + S  DL   IA FDK HG P++L  RI   R     +A+AAEFKRASPSK DIA+ +VA EQ V Y  AGA++LSVLTEPKWFKGSLQDM++VRLAT+
Sbjct:   88 DVGLAQAQTSAADLEARIAEFDKAHGPPLNLLERI---RAEEKPIALAAEFKRASPSKGDIALDLVAAEQGVKYTKAGASILSVLTEPKWFKGSLQDMEDVRLATE 190          
BLAST of mRNA_H-paniculata_contig27633.7567.1 vs. uniprot
Match: A0A6U0SXI8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0SXI8_9STRA)

HSP 1 Score: 110 bits (275), Expect = 7.210e-26
Identity = 60/106 (56.60%), Postives = 79/106 (74.53%), Query Frame = 1
Query:    1 DIAEAKLKVSEKDLVKAIAAFDKEHGDPIDLFVRIAGVREAYPDMAIAAEFKRASPSKQDIAVGVVAGEQAVLYASAGAAVLSVLTEPKWFKGSLQDMKEVRLATQ 318
            D+A A+ ++SE+ L +  A   ++ G P+DLF R   VR   P +A+AAEFKRASPSK DI VG+ AG Q + YA AGAA++SVLTE KWFKG+L+DMK+VR+ATQ
Sbjct:   50 DVARARQEISEEQLRQKAAELQEQLGGPLDLFDR---VRACSPSLAVAAEFKRASPSKGDINVGLDAGPQGLKYADAGAAIISVLTEDKWFKGTLEDMKQVRIATQ 152          
BLAST of mRNA_H-paniculata_contig27633.7567.1 vs. uniprot
Match: A0A1W0A6C8_9STRA (N-(5'-phosphoribosyl)anthranilate isomerase indole-3-glycerol-phosphate synthase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6C8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.840e-23
Identity = 57/107 (53.27%), Postives = 80/107 (74.77%), Query Frame = 1
Query:   16 KLKVSEKDLVKAIAAFDKEHGDPIDLFVRIAGVREAYPDMAIAAEFKRASPSKQDIAVGVVAGEQAVLYASAGAAVLSVLTEPKWFKGSLQDMKEVRLATQGFKEGR 336
            K  V E++L K IAA+++++G PI +  +I   R++ P +A+AAEFKRASPSK DIAV  +A EQA++YA  GA+V+SVLTEP+ FKG+LQDM +V LA +  K+ R
Sbjct:   19 KKHVCEEELFKKIAAYEEQYGKPISIVDKI---RQSAPLLAVAAEFKRASPSKGDIAVDAIAAEQAMIYAHGGASVISVLTEPERFKGTLQDMLDVALAIKAMKKDR 122          
BLAST of mRNA_H-paniculata_contig27633.7567.1 vs. uniprot
Match: A0A1Q9EMN6_SYMMI (Tryptophan biosynthesis protein TRP1 n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EMN6_SYMMI)

HSP 1 Score: 102 bits (254), Expect = 6.090e-23
Identity = 60/116 (51.72%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 DIAEAKLKVSEKDLVKAIAAFDKEHGDPIDLFVRIAGVREAYPDMAIAAEFKRASPSKQDIAVGVVAGEQAVLYASAGAAVLSVLTEPKWFKGSLQDMKEVRLATQGF--KEGRRK 342
            D+A AK K+  + L +A  AF KE G P  L   I    ++   +A+AAEFKRASPSK DI+  + A EQA++Y+  GA++LSVLTEPKWFKG+L D+K+VR+ TQ +  KEGRR+
Sbjct: 1135 DVAAAKEKLPPEQLAEAAQAFVKEFGAPQSLVDCIGEAEKSSWSLALAAEFKRASPSKGDISPDLDAAEQALVYSHHGASILSVLTEPKWFKGTLNDLKDVRVRTQAWAAKEGRRR 1250          
BLAST of mRNA_H-paniculata_contig27633.7567.1 vs. uniprot
Match: A0A812X829_9DINO (TRP1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812X829_9DINO)

HSP 1 Score: 100 bits (250), Expect = 2.100e-22
Identity = 59/116 (50.86%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 DIAEAKLKVSEKDLVKAIAAFDKEHGDPIDLFVRIAGVREAYPDMAIAAEFKRASPSKQDIAVGVVAGEQAVLYASAGAAVLSVLTEPKWFKGSLQDMKEVRLATQGF--KEGRRK 342
            D+A AK K+  + L +   AF KE G P  L   I    ++   +A+AAEFKRASPSK DI+  + A EQA++Y+  GA++LSVLTEPKWFKG+L D+K+VR+ TQ +  KEGRR+
Sbjct: 1042 DVATAKEKLPPEHLAETAQAFVKEFGAPQSLVDCIGAAEKSSWSLALAAEFKRASPSKGDISPDLDAAEQALVYSHHGASILSVLTEPKWFKGTLADLKDVRVRTQAWATKEGRRR 1157          
BLAST of mRNA_H-paniculata_contig27633.7567.1 vs. uniprot
Match: A0A812JXC0_9DINO (TRP1 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812JXC0_9DINO)

HSP 1 Score: 100 bits (248), Expect = 3.440e-22
Identity = 58/116 (50.00%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 DIAEAKLKVSEKDLVKAIAAFDKEHGDPIDLFVRIAGVREAYPDMAIAAEFKRASPSKQDIAVGVVAGEQAVLYASAGAAVLSVLTEPKWFKGSLQDMKEVRLATQGF--KEGRRK 342
            D+A +K K+  + L +A  AF KE G P  L   I    ++   +A+AAEFKRASPSK DI+  + A EQA++Y+  GA++LSVLTEPKWFKG+L D+++VR+ TQ +  KEGRR+
Sbjct:   30 DVATSKEKLPPEQLAEAAQAFVKEFGAPQSLVDCIGEAEKSSWSLALAAEFKRASPSKGDISPDLDAAEQALVYSHHGASILSVLTEPKWFKGTLNDLRDVRVRTQAWAAKEGRRR 145          
BLAST of mRNA_H-paniculata_contig27633.7567.1 vs. uniprot
Match: A0A7S1FDP4_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FDP4_NOCSC)

HSP 1 Score: 99.0 bits (245), Expect = 8.890e-22
Identity = 57/112 (50.89%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    1 DIAEAKLKVSEKDLVKAIAAFDKEHGDPIDLFVRIAGVREAYPDMAIAAEFKRASPSKQDIAVGVVAGEQAVLYASAGAAVLSVLTEPKWFKGSLQDMKEVRLATQGFKEGR 336
            D++ AK  V E ++ +  A F KE G P+ L   +    ++   +A+AAEFKRASPSK DI VG+ A  QA+ Y  AGA VLSVLTEPKWFKGSL D++EVR+ TQ + E +
Sbjct:   59 DVSGAKAAVPESEVRQQSAFFVKEFGAPLSLVECLEAAGKSPWGLALAAEFKRASPSKGDINVGIDAAVQALEYTKAGACVLSVLTEPKWFKGSLADLREVRVKTQQWSEAK 170          
BLAST of mRNA_H-paniculata_contig27633.7567.1 vs. uniprot
Match: A0A2U8JAI9_9STRA (Indole-3-glycerol-phosphate synthase (Fragment) n=1 Tax=Phytophthora sp. TaxID=89336 RepID=A0A2U8JAI9_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.450e-21
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    1 DIAEAKLKVSEKDLVKAIAAFDKEHGDPIDLFVRI-AGVREAYPDMAIAAEFKRASPSKQDIAVGVVAGEQAVLYASAGAAVLSVLTEPKWFKGSLQDMKEVRLATQGF 324
            D+  AK  V  + LVK I + +  +G  + +  R+ A V+E + D+A+AAEFKRASPSK DIA  +   EQ   YA AGA+++SVLTEPKWFKGSL+DM+  R   QG 
Sbjct:    4 DVEAAKRVVPAEQLVKKIESLEAVYGSALRVLDRLNAPVKEGWSDIALAAEFKRASPSKGDIATELNLQEQVKSYADAGASMISVLTEPKWFKGSLEDMQAARDVVQGM 112          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27633.7567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK77_ECTSI3.210e-3665.52Indole-3-glycerol-phosphate synthase n=1 Tax=Ectoc... [more]
A0A835YVM1_9STRA1.140e-3163.72Indole-3-glycerol phosphate synthase-domain-contai... [more]
W7TZP3_9STRA2.230e-2659.43Anthranilate synthase n=2 Tax=Monodopsidaceae TaxI... [more]
A0A6U0SXI8_9STRA7.210e-2656.60Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1W0A6C8_9STRA4.840e-2353.27N-(5'-phosphoribosyl)anthranilate isomerase indole... [more]
A0A1Q9EMN6_SYMMI6.090e-2351.72Tryptophan biosynthesis protein TRP1 n=4 Tax=Symbi... [more]
A0A812X829_9DINO2.100e-2250.86TRP1 protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A812JXC0_9DINO3.440e-2250.00TRP1 protein n=1 Tax=Symbiodinium sp. CCMP2456 Tax... [more]
A0A7S1FDP4_NOCSC8.890e-2250.89Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A2U8JAI9_9STRA1.450e-2149.54Indole-3-glycerol-phosphate synthase (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27633contigH-paniculata_contig27633:1165..2350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue3.4e-29
Seed eggNOG ortholog2880.D8LK77
Preferred nameTRP3
KEGG rclassRC00010,RC00944,RC00945,RC02148,RC02414
KEGG koko:K01656,ko:K13501
KEGG ReactionR00985,R00986,R03508,R03509
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00023
Hectar predicted targeting categoryother localisation
GOsGO:0000162,GO:0003674,GO:0003824,GO:0004049,GO:0004425,GO:0004640,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0016832,GO:0016833,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0033984,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494
EggNOG free text desc.indole-3-glycerol-phosphate synthase activity
EggNOG OGsCOG0134@1,KOG4201@2759
Ec32 ortholog descriptionBifunctional Indole-3-Glycerol Phosphate Synthase/Phosphoribosylanthranilate Isomerase (N-terminal)
Ec32 orthologEc-08_003030.1
EC4.1.1.48,4.1.3.27,5.3.1.24
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.2848063-CDS-H-paniculata_contig27633:1164..13891622929836.2848063-CDS-H-paniculata_contig27633:1164..1389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27633 1165..1389 -
1691481032.4442484-CDS-H-paniculata_contig27633:1164..13891691481032.4442484-CDS-H-paniculata_contig27633:1164..1389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27633 1165..1389 -
1622929836.3027492-CDS-H-paniculata_contig27633:2224..23501622929836.3027492-CDS-H-paniculata_contig27633:2224..2350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27633 2225..2350 -
1691481032.4616814-CDS-H-paniculata_contig27633:2224..23501691481032.4616814-CDS-H-paniculata_contig27633:2224..2350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27633 2225..2350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27633.7567.1prot_H-paniculata_contig27633.7567.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27633 1165..2350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27633.7567.1

>prot_H-paniculata_contig27633.7567.1 ID=prot_H-paniculata_contig27633.7567.1|Name=mRNA_H-paniculata_contig27633.7567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
DIAEAKLKVSEKDLVKAIAAFDKEHGDPIDLFVRIAGVREAYPDMAIAAE
FKRASPSKQDIAVGVVAGEQAVLYASAGAAVLSVLTEPKWFKGSLQDMKE
VRLATQGFKEGRRKRR*
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mRNA from alignment at H-paniculata_contig27633:1165..2350-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27633.7567.1 ID=mRNA_H-paniculata_contig27633.7567.1|Name=mRNA_H-paniculata_contig27633.7567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1186bp|location=Sequence derived from alignment at H-paniculata_contig27633:1165..2350- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATATCGCGGAGGCGAAACTGAAAGTGTCGGAGAAGGACCTGGTCAAGGC AATCGCTGCGTTTGACAAGGAACACGGGGATCCAATCGACCTCTTCGTGC GCATCGCAGGGGTGCGTGAGGCATACGTATATATATATGTGTGTGTGTGT GTGTGTTCTCTCCTTTGGCATATATTGTTTCTAATAATAGTCATATTCCA TTGTTATTCTTGTCCTGGACTTGGGTACAAAGGCTATATGCCCAAGGCCT CATGTATGAAGATATATATATATATATATATATTTTTTTTAATCTTTCAT TACTTTCGAGTACGTGTACCACGAAATTTCGAACCGACAATCGATTATCG TCACCACCTTTTGAAGTTTCGCTCTTGTGTTTTACGTTATTTGTTATTTG AAAGTGTGCTGCTTTGGCCTTGAATTAATTAGACTCTTGATTCATCGTCA GGCCGAACGCAGTTTTTCGTCGATTATGGGTGGGTGGTGAGTCGGTCGGT GGGTTGATATCGAAGATATTTTACGTTTTCCCCCAAAACGTCACCAAAGA TTGAAACTGGTAAATACCGACTATTATAGGTGCAGCTTCTGTTGTTTCTC TTCCTCGTTTACCTCGGGTGATGAAGCGGTAATGACCCAGCTATGTCTTG ATGCCCAAAACCGCGTTTCGTAATTAGCGGACCTTTAGACCTTGGTCGAA GTTTGGGCTTCAAAAGTAACTGAGAAAATCATCGTTGAGCTATCTACTAC ACCCGAAATGAGAGTTTTAGTCACATTTTGTAGGTTAAAAAAAACCAAAA AGTTTCTTTTTAAAACATTTTCAATTTTTTTAAATCTTAAAAATACATAT CTTTTTCAAGTTTTTATTTTTTTAATCTTTTTTAACTTAAAAAAAAAAAA TCTTTCTTCAAGGTTTTTTTTACATACACATATATACTTTATCATTATTA TTCAGGAAGAGCCAGACATGGCTATCGCCGCCGAGTTCAAGCGCGCCAGC CCGTCGAAGCAGGACATCGCGGTGGGAGTGGTAGCTGGCGAGCAAGCTGT GCTCTACGCCTCCGCAGGAGCCGCCGTTCTCTCGGTCCTGACGGAGCCCA AATGGTTTAAGGGTTCCCTCCAGGATATGAAGGAGGTGCGCCTGGCTACC CAGGGCTTTAAAGAGGGACGAAGAAAGAGAAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig27633:1165..2350-

>mRNA_H-paniculata_contig27633.7567.1 ID=mRNA_H-paniculata_contig27633.7567.1|Name=mRNA_H-paniculata_contig27633.7567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig27633:1165..2350- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATATCGCGGAGGCGAAACTGAAAGTGTCGGAGAAGGACCTGGTCAAGGC
AATCGCTGCGTTTGACAAGGAACACGGGGATCCAATCGACCTCTTCGTGC
GCATCGCAGGGGTGCGTGAGGCATACGATATCGCGGAGGCGAAACTGAAA
GTGTCGGAGAAGGACCTGGTCAAGGCAATCGCTGCGTTTGACAAGGAACA
CGGGGATCCAATCGACCTCTTCGTGCGCATCGCAGGGGTGCGTGAGGCAT
ACCCAGACATGGCTATCGCCGCCGAGTTCAAGCGCGCCAGCCCGTCGAAG
CAGGACATCGCGGTGGGAGTGGTAGCTGGCGAGCAAGCTGTGCTCTACGC
CTCCGCAGGAGCCGCCGTTCTCTCGGTCCTGACGGAGCCCAAATGGTTTA
AGGGTTCCCTCCAGGATATGAAGGAGGTGCGCCTGGCTACCCAGGGCTTT
AAAGAGGGACGAAGAAAGAGAAGGTGACCAGACATGGCTATCGCCGCCGA
GTTCAAGCGCGCCAGCCCGTCGAAGCAGGACATCGCGGTGGGAGTGGTAG
CTGGCGAGCAAGCTGTGCTCTACGCCTCCGCAGGAGCCGCCGTTCTCTCG
GTCCTGACGGAGCCCAAATGGTTTAAGGGTTCCCTCCAGGATATGAAGGA
GGTGCGCCTGGCTACCCAGGGCTTTAAAGAGGGACGAAGAAAGAGAAGGT
GA
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