mRNA_H-paniculata_contig2762.7563.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2762.7563.1
Unique NamemRNA_H-paniculata_contig2762.7563.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2762.7563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2762contigH-paniculata_contig2762:1505..5258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size461
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.7840245-CDS-H-paniculata_contig2762:1506..18281622929835.7840245-CDS-H-paniculata_contig2762:1506..1828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2762 1507..1828 -
1691481032.1875873-CDS-H-paniculata_contig2762:1506..18281691481032.1875873-CDS-H-paniculata_contig2762:1506..1828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2762 1507..1828 -
1622929835.807439-CDS-H-paniculata_contig2762:5121..52581622929835.807439-CDS-H-paniculata_contig2762:5121..5258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2762 5122..5258 -
1691481032.1976426-CDS-H-paniculata_contig2762:5121..52581691481032.1976426-CDS-H-paniculata_contig2762:5121..5258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2762 5122..5258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2762.7563.1prot_H-paniculata_contig2762.7563.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2762 1507..5258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2762.7563.1

>prot_H-paniculata_contig2762.7563.1 ID=prot_H-paniculata_contig2762.7563.1|Name=mRNA_H-paniculata_contig2762.7563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
GASVEASVSTAAPTGTDASTASEGFVGKPPETPTGAEEVASAGIQRPGTS
EVNRTLYLDPSSTPKSQNGRAMLKQRRARSVSSSGSMDHATSENVLSPSM
KQHHRRRSGGSVPGNGTGAGFATAVDATSSSVSSSRVSSRNPSPASSGSW
RRV
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mRNA from alignment at H-paniculata_contig2762:1505..5258-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2762.7563.1 ID=mRNA_H-paniculata_contig2762.7563.1|Name=mRNA_H-paniculata_contig2762.7563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3754bp|location=Sequence derived from alignment at H-paniculata_contig2762:1505..5258- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCTTCGGTGGAAGCTAGTGTCAGTACAGCTGCTCCTACTGGCACTGA
CGCATCTACTGCTTCCGAGGGTTTCGTGGGGAAGCCGCCGGAGACACCTA
CAGGGGCGGAGGAGGTGGCAAGCGCAGGCATCCAGAGGTGAGTAGTTTTT
CCGGACGTTCAATGCGTTTGTAAGTTTTTTGCGCGTAAATTAATTATTGC
TTTTGGTCGTGTGAGAGAACTGGCATGTTTGTCGTCACCACGAGAGTTGA
TATGCACAGACATGAGGAGCTTTGATATGCGAGAAGACTGGGGTGTTATT
CATCTTGTCTCCCATTAAACTATCCATGGTGTCTTCGGTGCTCGAGGTGG
GTGTCCTCGGTTCGTTTAACGTGTTGAACACTCTACCGTCTATTCTCACG
ATGCAGTGACGATTTTACTGGGCTGTCAACTGTACTCTACTATCTGTACT
GAAGTAGAAACCCGCACTCCGTTTGTGGGAACGGGATATCATTCAAGATT
TCGACCTCCTACACTCTTCGTTGTGTGCCTGTTTCGTGCACATACACAAA
AACCGACTGTTACTACTGTACAGAAGTTCTACACCATCAGACGGGATACG
TGTAGGTCATTGTCGGTGCGTGTCCTGCTTGGTAGATTTCATATGATTTG
CTAATTCGCGTGGTTATGATCTTAACCTTTATTAAATGCAGGAATGTTCT
CTGTCCAAGTTTCCATTATCCCAGCATTCAGAGATCCAGCAGGCAATTTG
TTCCACTGAGTGTCTCATGCGCATACATACTATGTCATACATGAGTGAGG
ATCAAAAACCCTATTAGATTAAACATTAAGGTGAGGTCGAGTTAACCCGA
GGCCTTTAAGTTTGTGTTGTATGTCTCGTATGATGCTTTCTCGTCTTGCA
GCAAATAAATGATGACAATTATAGCATATCCCCTCAGTGCGGAAAGGTTC
AAATCCGGGACTAGATTCGACGCTCTAGCATCGTGGACCGACTCACCAGG
CAGTACAGACAAACACTCCGCCGTTAATCTATTGTACGCATGCTAGCTGG
TGGTCTGTGGTGAGAGGAGTGAACTAAAGGAAACGTGTGGTGTTGTGGTA
CGATGTAGAACCTCAAGATAATTATGGAAAATATGAGAGAAAAGCGCCTT
AATGTCACTTGGTCCATACGGTAAGGTATTGGTGTTATCTTGTTTTTCGG
TGTCAAAGAGGGAGTAGTGTGATATTAACCTCCCCAAAATTGAACACATG
CTCCAACAAATCTTGCTTACGTACTCTCCTCTCCTAATGTATGTTAGCAT
GAGCGATGATGCATGATCCTCACTATTCTGTCAACAGTACAGTAGTGGAA
TAGATTTTGATCAGGGCAGATGTGAGGATTTGGAGCGTTTTGTGTAGGCG
ATATTTTACTCCCTTCCCGGGAACGACACCCTTCTTGGGCTCTCGAGAAA
TCGGACCTACCGGTTCGTTCCCTACCTGTCATCTAGGAGCTCTGTACTGT
ACGGTTGGACTACTTTATCGTTTTTGTTGTAGTGTGCATGTTGCCTCTTG
TTCTGAGGTACATGTGTACTTGTACCCCTCCATGCAGCACCGTACGGAGA
TCCAGTTCATATTTATGTTTTATATTTTGCTGTCTGATTGTTTCTTGCTT
ATGTGGCTCTCTCCCTGTATGCGGAATTTCGAATTCCTCGCAGTCTTTGA
ATCGGTCTTGACTATGAATCAGCCCTTCATTCACATAGTACGCAGCTTTC
GATTGTTGAGGGGTGAGCGTCGGGTTTTTGTGGTTTTCAGCGATCGTTTC
ATGAGTATCGATCACTGGTTGGTCTACGTCAACCGTGGAACGCCCCCACG
TGGATTACTGATATGAAAATGATTTAGCAAAAAGTAGGACGTTGTCACAG
TCCAGTACTCTACTTCCACGTATAGATCTCTACATCGGAGGATTCGAGAC
TGTTGTAGATTCAAAAAAGCAGTCGTAACCCTCTAGACTCTACAGACCTT
CTGTAAACTGCCAAAACTCAACAAGCGGTTTATACATGTGTATCAGTCTG
AACATGAAAGATGTGCATATGGCTGTTCACGTTTATTGTATTTTCACTTC
ACGGACGTGTTCATTTGCGCATCTGGAATTCAAAATGTACCGCTGTGTGG
ACACCACTCGACAGCCCCAGTAGGCGGCATCTACAAGAGCATCATCTGCC
TGCATGTTTGATTTTGGAGGTAAAATAACAGTCGTGTAACCAAGGTCTGT
CTGTTGTCTGTCTACAGGTATGTCCATTTCCGAGCACGGTAAAGAACTGC
CTACCGCGAACGCTAACCTCGATCCTTCTCGAGTATGTACACAGGAGTCA
TTGACAAGTCGACGCGCAGGGCGCACGTGACGCGCTGCTGCGAAGTAGAT
ATTGAAAACTCTGCACATGTCGTCGACACATAACTCTTTCGTGCATGAGT
CACAGAGCGTTTGAGGAAATTCTATTTTGTGCTCGTCTTGTGCTTGTTGA
CGTATTACGATGACAACAGTGCATCGACATCCATCATTTTTGTTTTTTAA
CCCCCGGAAGGCTGAGGCAAAAACCTTTACCGATACTTCCGTATATCCAT
GAACATTATTCAGTTATCGTCTGATGACTCAAAATTGTTGATACAGTCAT
ATACACCGTATTCCCTAATTTTACCTCCATCGAGTGGAATGGATTCTTGC
CGGGAGTCTACGCCGTACTTGACCCACGCTCCGTATATACGTGGGTAGGC
ATATTTAACGCAGCTGTCGAAGAGCACAAGAGCTTTTCACTCTCGCGATG
AGAGCGAATTATTGGGGTCAACTCCTCTCCGTCCCTTTGGGGTCGGGCAT
TTGATGGCCCAACAACTACGATAAACAGAGCATTGAGTAGAGTGCCTCAC
GCCTCCCCCCCTCTCCCTTTCCCTTCCTGGTGTTCCTGCCCAGTTTTGTC
ATACACTCCTGTTTTATTATCAACCCTAAATGCTGTGGTAGAACGAGCCA
AGCGCCAATTTCCTCAGATGCATCACCACAAAACCTACTGTAGTGGTCAA
GAGCAGCTACACAGGGAGATACTTGAGGGTCGAAGGAAAAGCGCTTTTTT
TTGTGTCTGCGAGGACTTCCTTTAACCCCGACGACCGTGCCACACTTGAA
ATATTCTTCCTGCAGGTAGCAGAAGCAGCGATCAAACGTCTTCTGTTTGA
AAATACTAGTAATAGAACGAGAGAGCATACGTGGATGGTCAACTTTGCGT
CATACGAATGTGCTCCCCTTCGAAGTCGAGATTTTCAGGTTTAGCTGACT
GAAATAACACTTGCATGAATAGTAACATAACCCTCAATTTTGATGTCCAA
ACACCCCACCCTCGTTTCTCGATGCCGAATATTTCACTTTTCGTGCGGAC
TCCTCCTGCGCCTGAGCGACCAAAAAAAAGACCCGGAACTTCAGAGGTGA
ACAGAACACTCTATCTCGACCCATCGTCCACTCCAAAATCCCAAAACGGC
AGAGCCATGCTCAAGCAACGCCGGGCACGTAGCGTAAGCAGCAGTGGCAG
CATGGACCACGCCACATCGGAAAATGTACTCTCTCCTTCGATGAAGCAGC
ACCACAGGAGAAGGAGTGGTGGTAGCGTTCCCGGGAACGGTACCGGAGCA
GGGTTTGCAACAGCGGTAGACGCTACGTCGTCTTCTGTGTCATCGTCCAG
AGTTTCGTCGAGAAATCCGTCGCCAGCTTCCTCGGGGAGTTGGAGAAGAG
TTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2762:1505..5258-

>mRNA_H-paniculata_contig2762.7563.1 ID=mRNA_H-paniculata_contig2762.7563.1|Name=mRNA_H-paniculata_contig2762.7563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig2762:1505..5258- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCTTCGGTGGAAGCTAGTGTCAGTACAGCTGCTCCTACTGGCACTGA
CGCATCTACTGCTTCCGAGGGTTTCGTGGGGAAGCCGCCGGAGACACCTA
CAGGGGCGGAGGAGGTGGCAAGCGCAGGCATCCAGAGGGTGCTTCGGTGG
AAGCTAGTGTCAGTACAGCTGCTCCTACTGGCACTGACGCATCTACTGCT
TCCGAGGGTTTCGTGGGGAAGCCGCCGGAGACACCTACAGGGGCGGAGGA
GGTGGCAAGCGCAGGCATCCAGAGACCCGGAACTTCAGAGGTGAACAGAA
CACTCTATCTCGACCCATCGTCCACTCCAAAATCCCAAAACGGCAGAGCC
ATGCTCAAGCAACGCCGGGCACGTAGCGTAAGCAGCAGTGGCAGCATGGA
CCACGCCACATCGGAAAATGTACTCTCTCCTTCGATGAAGCAGCACCACA
GGAGAAGGAGTGGTGGTAGCGTTCCCGGGAACGGTACCGGAGCAGGGTTT
GCAACAGCGGTAGACGCTACGTCGTCTTCTGTGTCATCGTCCAGAGTTTC
GTCGAGAAATCCGTCGCCAGCTTCCTCGGGGAGTTGGAGAAGAGTTACCC
GGAACTTCAGAGGTGAACAGAACACTCTATCTCGACCCATCGTCCACTCC
AAAATCCCAAAACGGCAGAGCCATGCTCAAGCAACGCCGGGCACGTAGCG
TAAGCAGCAGTGGCAGCATGGACCACGCCACATCGGAAAATGTACTCTCT
CCTTCGATGAAGCAGCACCACAGGAGAAGGAGTGGTGGTAGCGTTCCCGG
GAACGGTACCGGAGCAGGGTTTGCAACAGCGGTAGACGCTACGTCGTCTT
CTGTGTCATCGTCCAGAGTTTCGTCGAGAAATCCGTCGCCAGCTTCCTCG
GGGAGTTGGAGAAGAGTT
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