mRNA_H-paniculata_contig27557.7543.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27557.7543.1
Unique NamemRNA_H-paniculata_contig27557.7543.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27557.7543.1 vs. uniprot
Match: D7G8W9_ECTSI (CPSF_A domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W9_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 3.620e-31
Identity = 55/64 (85.94%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:   10 RAYRLFAHGPTFRHQSKKNMLDGTVLWRFVGLDARTQHDLTRAIGTTVDRVMANLLEIDLASLF 201
            RAYRLF HGPTFR+++K+NMLDG++LWRFVGLDA+TQHDLTRAIGTTVDRVMANLL+IDLASLF
Sbjct:  192 RAYRLFDHGPTFRYETKQNMLDGSLLWRFVGLDAKTQHDLTRAIGTTVDRVMANLLDIDLASLF 255
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BLAST of mRNA_H-paniculata_contig27557.7543.1 vs. uniprot
Match: A0A2P6N721_9EUKA (Cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N721_9EUKA)

HSP 1 Score: 54.3 bits (129), Expect = 7.110e-7
Identity = 23/63 (36.51%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:    1 IKSRAYRLFAHGPTFRHQSKKNMLDGTVLWRFVGLDARTQHDLTRAIGTTVDRVMANLLEIDL 189
            +  R YR        R++++ +MLDG ++W+++ LD   Q  L RAIGTT ++++ N+++IDL
Sbjct: 1222 LNPRGYRATGRRKMTRNEARNDMLDGDLIWQYLSLDHIDQRRLARAIGTTQEQILRNMMDIDL 1284
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BLAST of mRNA_H-paniculata_contig27557.7543.1 vs. uniprot
Match: A0A8H7S4A0_9FUNG (CPSF_A domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S4A0_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 1.630e-5
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    1 IKSRAYRLFAHGPTFRHQSK--KNMLDGTVLWRFVGLDARTQHDLTRAIGTTVDRVMANLLEID 186
            +  RA+RL   GP  R  S   K +LDG +++ F GL    Q ++T+ IGTTV R+M +L++ID
Sbjct: 1321 LNPRAFRLIK-GPKHRMSSNRTKAVLDGNLIFEFAGLSVNKQREMTKQIGTTVARIMEDLVDID 1383
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BLAST of mRNA_H-paniculata_contig27557.7543.1 vs. uniprot
Match: A0A068SD23_9FUNG (Cleavage and polyadenylation specificity factorsubunit 1 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068SD23_9FUNG)

HSP 1 Score: 49.7 bits (117), Expect = 3.060e-5
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    1 IKSRAYRLF-AHGPTFRHQSKKNMLDGTVLWRFVGLDARTQHDLTRAIGTTVDRVMANLLEIDL 189
            +  RA+RL   H         K +LDG +++ F GL    Q ++T+ IGTTV R+M +L+EID+
Sbjct: 1466 LNPRAFRLIKGHKQRMSSNRTKAVLDGDLIFEFAGLSVGQQREMTKQIGTTVTRIMEDLVEIDI 1529
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BLAST of mRNA_H-paniculata_contig27557.7543.1 vs. uniprot
Match: UPI001E1DCDC7 (cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DCDC7)

HSP 1 Score: 49.3 bits (116), Expect = 4.180e-5
Identity = 21/62 (33.87%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    1 IKSRAYRLFAHGPTFRHQSKKNMLDGTVLWRFVGLDARTQHDLTRAIGTTVDRVMANLLEID 186
            +  RAYR   +       + KN+LDG +LW+F+ L    + ++ + IGT+VD+++ +L+E+D
Sbjct: 1360 LNPRAYRAVRNNSLDLSNAHKNILDGELLWKFLHLSVLEKSEMAKRIGTSVDQLVEDLMEVD 1421
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BLAST of mRNA_H-paniculata_contig27557.7543.1 vs. uniprot
Match: A0A7S1BI36_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BI36_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 7.650e-5
Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:   10 RAYRLFAH----GPTFRHQSKKNMLDGTVLWRFVGLDARTQHDLTRAIGTTVDRVMANLLEIDLASL 198
            R +RLF      G     + +K +LDG +L R+  L    Q ++ RAIGTTVD +M NLLE+D A +
Sbjct:  476 RGWRLFQRTTQRGACRSGERQKGVLDGGLLMRYCQLGYFQQEEIARAIGTTVDMIMDNLLELDCARM 542
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27557.7543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G8W9_ECTSI3.620e-3185.94CPSF_A domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A2P6N721_9EUKA7.110e-736.51Cleavage and polyadenylation specificity factor su... [more]
A0A8H7S4A0_9FUNG1.630e-542.19CPSF_A domain-containing protein n=1 Tax=Mucor cir... [more]
A0A068SD23_9FUNG3.060e-539.06Cleavage and polyadenylation specificity factorsub... [more]
UPI001E1DCDC74.180e-533.87cleavage and polyadenylation specificity factor su... [more]
A0A7S1BI36_9STRA7.650e-541.79Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27557contigH-paniculata_contig27557:2249..2452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue8.5e-25
Seed eggNOG ortholog2880.D7G8W9
KEGG koko:K14401
KEGG Pathwayko03015,map03015
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG5161@1,KOG1896@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929832.811093-CDS-H-paniculata_contig27557:2248..24521622929832.811093-CDS-H-paniculata_contig27557:2248..2452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27557 2249..2452 -
1691481030.9435294-CDS-H-paniculata_contig27557:2248..24521691481030.9435294-CDS-H-paniculata_contig27557:2248..2452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27557 2249..2452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27557.7543.1prot_H-paniculata_contig27557.7543.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27557 2249..2452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27557.7543.1

>prot_H-paniculata_contig27557.7543.1 ID=prot_H-paniculata_contig27557.7543.1|Name=mRNA_H-paniculata_contig27557.7543.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
IKSRAYRLFAHGPTFRHQSKKNMLDGTVLWRFVGLDARTQHDLTRAIGTT
VDRVMANLLEIDLASLF*
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mRNA from alignment at H-paniculata_contig27557:2249..2452-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27557.7543.1 ID=mRNA_H-paniculata_contig27557.7543.1|Name=mRNA_H-paniculata_contig27557.7543.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig27557:2249..2452- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAAAATCCAGGGCATACCGGCTGTTTGCTCACGGGCCGACTTTTCGCCA
CCAGAGTAAGAAGAATATGCTGGACGGGACCGTGCTGTGGCGGTTCGTGG
GGCTAGACGCTCGCACCCAGCACGATCTCACGCGAGCCATCGGAACCACG
GTGGACCGCGTCATGGCCAATCTACTCGAGATCGACCTCGCCTCGCTCTT
CTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig27557:2249..2452-

>mRNA_H-paniculata_contig27557.7543.1 ID=mRNA_H-paniculata_contig27557.7543.1|Name=mRNA_H-paniculata_contig27557.7543.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig27557:2249..2452- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAAAATCCAGGGCATACCGGCTGTTTGCTCACGGGCCGACTTTTCGCCA
CCAGAGTAAGAAGAATATGCTGGACGGGACCGTGCTGTGGCGGTTCGTGG
GGCTAGACGCTCGCACCCAGCACGATCTCACGCGAGCCATCGGAACCACG
GTGGACCGCGTCATGGCCAATCTACTCGAGATCGACCTCGCCTCGCTCTT
CTAAATAAAATCCAGGGCATACCGGCTGTTTGCTCACGGGCCGACTTTTC
GCCACCAGAGTAAGAAGAATATGCTGGACGGGACCGTGCTGTGGCGGTTC
GTGGGGCTAGACGCTCGCACCCAGCACGATCTCACGCGAGCCATCGGAAC
CACGGTGGACCGCGTCATGGCCAATCTACTCGAGATCGACCTCGCCTCGC
TCTTCTAA
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