mRNA_H-paniculata_contig27551.7541.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27551.7541.1
Unique NamemRNA_H-paniculata_contig27551.7541.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27551.7541.1 vs. uniprot
Match: D7G9I0_ECTSI (C2H2 zinc finger, ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I0_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.590e-18
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 PGFAAAREGNVERLRGLVEGAGGIGGWDIKTAVDRNGSVALDWAAGKGRLEVCRYLLEECGVD 189
            PGFAAAR G++  L+ LVE  G    W+ KTA+D+NGS  LDWAAG+GRLEVCRYLL ECGVD
Sbjct:  353 PGFAAARAGDLGALKRLVEEEG----WEPKTALDKNGSSPLDWAAGEGRLEVCRYLLHECGVD 411
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BLAST of mRNA_H-paniculata_contig27551.7541.1 vs. uniprot
Match: C1EG68_MICCC (C2H2-type domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EG68_MICCC)

HSP 1 Score: 68.6 bits (166), Expect = 7.010e-12
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    1 PGFAAAREGNVERLRGLVEGAGGIGGWDIKTAVDRNGSVALDWAAGKGRLEVCRYLLEECGVD 189
            PG  AAR G+V+ LR LV+  G    WD   AVDR+GS AL WAAG GRL+  ++L+EE G D
Sbjct:  278 PGLEAARRGDVDALRRLVKDEG----WDANAAVDRHGSGALLWAAGAGRLDAVKFLVEEAGTD 336
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BLAST of mRNA_H-paniculata_contig27551.7541.1 vs. uniprot
Match: A0A6H5K2T6_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T6_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 9.430e-12
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 PGFAAAREGNVERLRGLVEGAGGIGGWDIKTAVDRNGSVALDWAAGKGRLEVCRYLL 171
            PGFAAAR G++  L+ LVE  G    W  KTA+D+NGS  LDWAAG+GRLEVCR  L
Sbjct:  339 PGFAAARAGDLGALKRLVEEEG----WAPKTALDKNGSSPLDWAAGEGRLEVCRTSL 391
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BLAST of mRNA_H-paniculata_contig27551.7541.1 vs. uniprot
Match: A0A813FNY0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FNY0_POLGL)

HSP 1 Score: 65.9 bits (159), Expect = 5.790e-11
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    1 PGFAAAREGNVERLRGLVEGAGGIGGWDIKTAVDRNGSVALDWAAGKGRLEVCRYLLEECGVD 189
            PG  AAR+G+++ L+ LV+G    G W   TA D +G+  L WAAG G + VCR+L+EE GVD
Sbjct:  132 PGIRAARDGDLDELKRLVQG----GRWHPLTAADHHGNGPLHWAAGSGHVAVCRWLVEEAGVD 190
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BLAST of mRNA_H-paniculata_contig27551.7541.1 vs. uniprot
Match: A0A061RED0_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RED0_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 1.920e-10
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    1 PGFAAAREGNVERLRGLVEGAGGIGGWDIKTAVDRNGSVALDWAAGKGRLEVCRYLLEECGV 186
            P    AR+GN+E L  LV+     GG D     DR+GS AL +AAG G+LEVCRYL+E CGV
Sbjct:   88 PWVXPARDGNLEALAALVDS----GGLDPAADTDRHGSTALHFAAGAGQLEVCRYLVERCGV 145
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BLAST of mRNA_H-paniculata_contig27551.7541.1 vs. uniprot
Match: F2UCW9_SALR5 (PKS_PP domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UCW9_SALR5)

HSP 1 Score: 62.0 bits (149), Expect = 1.420e-9
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    4 GFAAAREGNVERLRGLVEGAGGIGGWDIKTAVDRNGSVALDWAAGKGRLEVCRYLLEECGVD 189
            G  AAR G+   +R LV       GW++   VD++G  AL WAAG+G +E+C++L+EECGVD
Sbjct:  949 GLHAARVGDALAVRQLVHR-----GWNVTKVVDKHGLNALHWAAGQGHVELCQFLVEECGVD 1005
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BLAST of mRNA_H-paniculata_contig27551.7541.1 vs. uniprot
Match: A0A7S4VCC4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4VCC4_9DINO)

HSP 1 Score: 60.8 bits (146), Expect = 2.720e-9
Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    4 GFAAAREGNVERLRGLVEGAGGIGGWDIKTAVDRNGSVALDWAAGKGRLEVCRYLLEECGVD 189
            G  AAR+G +E LR LV+     G W   TA D  G+  L WAAG G L+VCR+L+EE G+D
Sbjct:  203 GMQAARDGQLEVLRCLVQ----TGRWRPLTACDHRGNGPLHWAAGAGHLDVCRWLVEETGLD 260
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BLAST of mRNA_H-paniculata_contig27551.7541.1 vs. uniprot
Match: A0A7S1G5T1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5T1_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.020e-7
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:    4 GFAAAREGNVERLRGLVEGAGGIGGWDIKTAVDRNGSVALDWAAGKGRLEVCRYLLEECG 183
            G  A R G++  LR LV      G WD +   DR+GS AL WAAG G L+VCR+L++ECG
Sbjct:   97 GLDAVRCGDLVALRALVA----AGEWDPREK-DRHGSSALLWAAGGGHLDVCRWLVDECG 151
[Close]
BLAST of mRNA_H-paniculata_contig27551.7541.1 vs. uniprot
Match: A0A7S1BCG5_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCG5_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.500e-7
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    7 FAAAREGNVERLRGLVEGAGGIGGWDIKTAVDRNGSVALDWAAGKGRLEVCRYLLEEC 180
             A A+ G+ + L+ L+E     G +D K A D+NGS AL WAAG GRL  C YLL+ C
Sbjct:   92 MACAKTGDTDSLKKLIEN----GLFDPKGARDKNGSTALMWAAGSGRLSTCAYLLDAC 145
[Close]
BLAST of mRNA_H-paniculata_contig27551.7541.1 vs. uniprot
Match: A0A061SCH4_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SCH4_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 3.350e-7
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   79 WDIKTAVDRNGSVALDWAAGKGRLEVCRYLLEECGV 186
            W  +  VDR+GS AL WAAG GRLEVC++L++EC V
Sbjct:   18 WHPEKIVDRHGSTALMWAAGNGRLEVCKFLIDECKV 53
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27551.7541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G9I0_ECTSI1.590e-1866.67C2H2 zinc finger, ankyrin repeat protein n=1 Tax=E... [more]
C1EG68_MICCC7.010e-1253.97C2H2-type domain-containing protein n=1 Tax=Microm... [more]
A0A6H5K2T6_9PHAE9.430e-1261.40C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A813FNY0_POLGL5.790e-1149.21Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A061RED0_9CHLO1.920e-1053.23Uncharacterized protein n=1 Tax=Tetraselmis sp. GS... [more]
F2UCW9_SALR51.420e-946.77PKS_PP domain-containing protein n=1 Tax=Salpingoe... [more]
A0A7S4VCC4_9DINO2.720e-950.00Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S1G5T1_9STRA1.020e-750.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1BCG5_9STRA1.500e-748.28Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
A0A061SCH4_9CHLO3.350e-761.11Uncharacterized protein (Fragment) n=1 Tax=Tetrase... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27551contigH-paniculata_contig27551:123..1015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue6.2e-15
Seed eggNOG ortholog2880.D7G9I0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG0509@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929832.6898415-CDS-H-paniculata_contig27551:122..2831622929832.6898415-CDS-H-paniculata_contig27551:122..283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27551 123..283 +
1691481030.8989558-CDS-H-paniculata_contig27551:122..2831691481030.8989558-CDS-H-paniculata_contig27551:122..283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27551 123..283 +
1622929832.724434-CDS-H-paniculata_contig27551:969..10151622929832.724434-CDS-H-paniculata_contig27551:969..1015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27551 970..1015 +
1691481030.9085252-CDS-H-paniculata_contig27551:969..10151691481030.9085252-CDS-H-paniculata_contig27551:969..1015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27551 970..1015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27551.7541.1prot_H-paniculata_contig27551.7541.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27551 123..1015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27551.7541.1

>prot_H-paniculata_contig27551.7541.1 ID=prot_H-paniculata_contig27551.7541.1|Name=mRNA_H-paniculata_contig27551.7541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
PGFAAAREGNVERLRGLVEGAGGIGGWDIKTAVDRNGSVALDWAAGKGRL
EVCRYLLEECGVDQRKSA*
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mRNA from alignment at H-paniculata_contig27551:123..1015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27551.7541.1 ID=mRNA_H-paniculata_contig27551.7541.1|Name=mRNA_H-paniculata_contig27551.7541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=893bp|location=Sequence derived from alignment at H-paniculata_contig27551:123..1015+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGGGTTTGCGGCGGCGCGCGAGGGGAACGTGGAGCGACTACGAGGGCT
GGTGGAGGGGGCGGGGGGTATAGGGGGATGGGATATCAAGACGGCTGTAG
ATAGGAACGGGTCCGTGGCGCTGGACTGGGCCGCTGGGAAGGGACGGCTC
GAGGTTTGTAGGTAGGTGGGAGAGGAGGAGGGGGTGCGGAAGATAAAGAG
GGGATGTGCAGAAGATAATAATAGTGCCACAAAACGATTCATGTGTTTTT
TATTCTGTTATAGGATTTTCGTTCTGTCGCTCCATGCGTGCACTTTTGAT
GTTGGGGCTGCCTGTTGTGCACGTTGTATCTCCAACCTGCGTATAATATG
GTCCTCAGGTAGAGCCTACAGTACTAGCGCACCAAAACGTAACAGCGGCC
ACGAACGAAAGTCATTGCGCATGGCTGTATTGCTTGAACCGAAGAACATG
CTGCGGCGGTGAGGTTGACGCTTTTCTACCTGATCGTCGCATCTCTGTCG
ATCTGCTGTTATTTTCGCGCCTTCCTGCTCCTGTTCGGATCGGTGCGCCA
ATGCGGTAAGAATGGATGATAGTCCGTAAGCAGTGTTGCGACCTCAGTGA
TGAGGCGTTCTTTGTGGGCAAACACCTTCCATTTTTCCCTCGTTTCCTTC
TTCAGTGCTCCTACTTGCGGTTGAGTTCGATTAAATAGTTTGGGATCTCG
GCATCTTGGGGATGTCCAGTAGAGCAATTTCATGCCTGAAAGGATTTCGT
CCTGAAAAAAAGAGCTGTCGCTGAAGTTCCGACAGCCTGCCGTTTGTATC
TCTTTTGAAGGAACGCATTTGCTGCTTGCTGCCTTGGTTCTCCGCAGGTA
TCTGCTGGAAGAATGCGGTGTCGACCAGCGAAAAAGTGCTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig27551:123..1015+

>mRNA_H-paniculata_contig27551.7541.1 ID=mRNA_H-paniculata_contig27551.7541.1|Name=mRNA_H-paniculata_contig27551.7541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig27551:123..1015+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGGGTTTGCGGCGGCGCGCGAGGGGAACGTGGAGCGACTACGAGGGCT
GGTGGAGGGGGCGGGGGGTATAGGGGGATGGGATATCAAGACGGCTGTAG
ATAGGAACGGGTCCGTGGCGCTGGACTGGGCCGCTGGGAAGGGACGGCTC
GAGGTTTGTAGCCCGGGTTTGCGGCGGCGCGCGAGGGGAACGTGGAGCGA
CTACGAGGGCTGGTGGAGGGGGCGGGGGGTATAGGGGGATGGGATATCAA
GACGGCTGTAGATAGGAACGGGTCCGTGGCGCTGGACTGGGCCGCTGGGA
AGGGACGGCTCGAGGTTTGTAGGTATCTGCTGGAAGAATGCGGTGTCGAC
CAGCGAAAAAGTGCTTGAGTATCTGCTGGAAGAATGCGGTGTCGACCAGC
GAAAAAGTGCTTGA
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