mRNA_H-paniculata_contig2753.7536.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2753.7536.1
Unique NamemRNA_H-paniculata_contig2753.7536.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2753.7536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2753contigH-paniculata_contig2753:3832..5517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size570
Cds size552
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2753.7536.1prot_H-paniculata_contig2753.7536.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2753 3850..5517 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929832.0516214-UTR-H-paniculata_contig2753:3831..38491622929832.0516214-UTR-H-paniculata_contig2753:3831..3849Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2753 3832..3849 +
1691481030.5583766-UTR-H-paniculata_contig2753:3831..38491691481030.5583766-UTR-H-paniculata_contig2753:3831..3849Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2753 3832..3849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929832.0653708-CDS-H-paniculata_contig2753:3849..38881622929832.0653708-CDS-H-paniculata_contig2753:3849..3888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2753 3850..3888 +
1691481030.5678055-CDS-H-paniculata_contig2753:3849..38881691481030.5678055-CDS-H-paniculata_contig2753:3849..3888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2753 3850..3888 +
1622929832.081371-CDS-H-paniculata_contig2753:4329..44041622929832.081371-CDS-H-paniculata_contig2753:4329..4404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2753 4330..4404 +
1691481030.5763705-CDS-H-paniculata_contig2753:4329..44041691481030.5763705-CDS-H-paniculata_contig2753:4329..4404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2753 4330..4404 +
1622929832.0939019-CDS-H-paniculata_contig2753:5079..55171622929832.0939019-CDS-H-paniculata_contig2753:5079..5517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2753 5080..5517 +
1691481030.5875416-CDS-H-paniculata_contig2753:5079..55171691481030.5875416-CDS-H-paniculata_contig2753:5079..5517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2753 5080..5517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2753.7536.1

>prot_H-paniculata_contig2753.7536.1 ID=prot_H-paniculata_contig2753.7536.1|Name=mRNA_H-paniculata_contig2753.7536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=184bp
MSNSSDFILSAEQVHQLGMVVNELAGQTSPALQLQAGQVSELASFQHFLT
DWEPTLGNHIKTNKANWDAKMALAKENATLRAELAEFQKTTAIPGKGGAY
DRGEVQRAVSSVSAVVDAVSSSHDHGLGCGTVVASSSSSTTLGMGRGRLD
DSHTSSTLSANMDGGILEIETAAPKLDITDSGHS
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mRNA from alignment at H-paniculata_contig2753:3832..5517+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2753.7536.1 ID=mRNA_H-paniculata_contig2753.7536.1|Name=mRNA_H-paniculata_contig2753.7536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1686bp|location=Sequence derived from alignment at H-paniculata_contig2753:3832..5517+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAATTGAACACCTGGAGCATGAGTAACAGCTCCGATTTCATCCTAAGCGC
GGAACAGGTGAGATGTGCGGAAAGCTGTGAAAGGATTGGGAGCTTGTTCA
GAAACAAGTCCAGCGATGAAACACATGGAGAAGTAGGCCCAAGTATTGAG
TGCCTTTTTGTTCTGAACAGTACAGCCTCTTTCACGCAGCTGATTCTCCT
TCTTCGTGTGGTTTTGGGGATTTAAAATTTTCGTTCTTTACCTTCTGTTT
TCTCATCTTGCTGTACTATACAATAAGGATGACTGCGGAGCTCCAACATG
TGAATGGTGACCGTTCCATGCAATGTAGAGGACCCCCAGGGCTCTGACTG
TGTTCTCACCACGAGGGTCGAAATAGGAATATGAAGACATCAATTACGAT
TATCGCTCATGGATCGGCTTTTGAACGCTGCCCCCATCCCTCGTTCGTCG
CGTCCTTGCTGCACGATGGCAAACAACGCTGTTGGCGGTACCCACCAGGT
GCACCAGCTGGGGATGGTGGTTAACGAGTTGGCCGGACAAACTTCCCCTG
CTTTGCAGCTACAAGCCGGGCAGGTGATATGTGTGGAAAACTGTGAAAGG
ATTGGAGAGGAGGGGGGGTTAAGACAAAATACAGCAGGCGATGAATAACA
ACGGAGGTTTAGGTGCAATAGCAATAACGAGATTCTTTTTGTTCTGGATA
GTGTGGCCTCCCTCATCAGGTAGCTCAATATTGTCTATACTGCATCCCGG
ACACACGTTTTAGTTGTTGCCCACGTTTTGATCATTTTCTTCTTTTACTG
TGCTGTTCGATGAGGGTGGCTTGAGAGGGGAGGAGCTGAAATGTGTAGTT
CACCGTTCAAGGCAATTTCGAAACGCCGGAGGGCTCGCCTGGGTAGCCTT
TGACTTATGTGCTGCTCCGTACAGTGTATTGTGATGCACACGCAGCCAGT
GCGGCACAGAGCGTACCTTTGGTGACATTCCACCTCGTCCACGACGTGGG
AAAAAGATATTCACTAGCACAAAGAAGAACCGCTCAGCTATGACAAGCAA
GCTGAGGACGGGTAGCATTGGCCGATAGAGAAGGCGCGGGGGGCGTTGCT
TGTACAACACATCTCATTGTACCCCACGGTAATCGTTACTGTAGTGTACG
GTCTTAATTCATCAGCACCCTTCCGTTCGCTCCACCCGCCATTTCCTCCT
TCCCTTCTTCGGTTCCCATACCTGATTCACTTTACTTGTCTGTCTCAGGT
CAGCGAACTGGCGTCCTTCCAGCATTTCCTAACAGACTGGGAGCCGACGC
TGGGCAACCATATTAAGACCAACAAAGCCAACTGGGACGCCAAGATGGCA
CTCGCCAAGGAAAACGCCACTCTCCGGGCGGAACTGGCTGAGTTCCAAAA
GACGACCGCTATCCCGGGGAAAGGCGGTGCGTACGATCGTGGCGAGGTGC
AGAGAGCTGTTTCTTCGGTCTCCGCAGTTGTTGACGCCGTAAGTAGCAGT
CACGACCACGGGTTGGGTTGTGGTACGGTTGTTGCATCATCATCGTCGTC
GACGACGCTCGGTATGGGGCGTGGTCGCCTCGACGACTCTCACACGTCGA
GCACTCTATCGGCAAACATGGATGGCGGCATATTGGAAATTGAAACGGCT
GCTCCGAAATTGGACATTACCGACAGCGGCCACTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig2753:3832..5517+

>mRNA_H-paniculata_contig2753.7536.1 ID=mRNA_H-paniculata_contig2753.7536.1|Name=mRNA_H-paniculata_contig2753.7536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig2753:3832..5517+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTAACAGCTCCGATTTCATCCTAAGCGCGGAACAGATGAGTAACAG
CTCCGATTTCATCCTAAGCGCGGAACAGGTGCACCAGCTGGGGATGGTGG
TTAACGAGTTGGCCGGACAAACTTCCCCTGCTTTGCAGCTACAAGCCGGG
CAGGTGCACCAGCTGGGGATGGTGGTTAACGAGTTGGCCGGACAAACTTC
CCCTGCTTTGCAGCTACAAGCCGGGCAGGTCAGCGAACTGGCGTCCTTCC
AGCATTTCCTAACAGACTGGGAGCCGACGCTGGGCAACCATATTAAGACC
AACAAAGCCAACTGGGACGCCAAGATGGCACTCGCCAAGGAAAACGCCAC
TCTCCGGGCGGAACTGGCTGAGTTCCAAAAGACGACCGCTATCCCGGGGA
AAGGCGGTGCGTACGATCGTGGCGAGGTGCAGAGAGCTGTTTCTTCGGTC
TCCGCAGTTGTTGACGCCGTAAGTAGCAGTCACGACCACGGGTTGGGTTG
TGGTACGGTTGTTGCATCATCATCGTCGTCGACGACGCTCGGTATGGGGC
GTGGTCGCCTCGACGACTCTCACACGTCGAGCACTCTATCGGCAAACATG
GATGGCGGCATATTGGAAATTGAAACGGCTGCTCCGAAATTGGACATTAC
CGACAGCGGCCACTCCGTCAGCGAACTGGCGTCCTTCCAGCATTTCCTAA
CAGACTGGGAGCCGACGCTGGGCAACCATATTAAGACCAACAAAGCCAAC
TGGGACGCCAAGATGGCACTCGCCAAGGAAAACGCCACTCTCCGGGCGGA
ACTGGCTGAGTTCCAAAAGACGACCGCTATCCCGGGGAAAGGCGGTGCGT
ACGATCGTGGCGAGGTGCAGAGAGCTGTTTCTTCGGTCTCCGCAGTTGTT
GACGCCGTAAGTAGCAGTCACGACCACGGGTTGGGTTGTGGTACGGTTGT
TGCATCATCATCGTCGTCGACGACGCTCGGTATGGGGCGTGGTCGCCTCG
ACGACTCTCACACGTCGAGCACTCTATCGGCAAACATGGATGGCGGCATA
TTGGAAATTGAAACGGCTGCTCCGAAATTGGACATTACCGACAGCGGCCA
CTCC
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