mRNA_H-paniculata_contig27436.7509.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27436.7509.1
Unique NamemRNA_H-paniculata_contig27436.7509.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27436.7509.1 vs. uniprot
Match: A0A6H5JZI7_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI7_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 7.130e-26
Identity = 58/118 (49.15%), Postives = 72/118 (61.02%), Query Frame = 1
Query:    1 YAQTLTNSQNCGELFHSEREDRNGWGENLFLCGSTDTTKDCYSAGYAMNGFYDKEVTDGPVTTYLGHATQILWKDTQEVGCAVESCEKIEQSHTWRYSVLVCNYNPTGNYLGQYEEQI 354
            +A+ LT +Q    LFHS +E R G+GENL++C  +D+   CYS   AM G Y  EV    V  Y GHATQILWK T++VGC V  C     +    Y  LVC Y+P GNY GQYEEQ+
Sbjct:  273 HAERLT-AQCSSNLFHSTQEQRYGYGENLYMCWGSDS---CYSHERAMEGLYYDEVQSDSVLQYGGHATQILWKSTEQVGCVVARCT----NGGTPYMFLVCQYDPPGNYGGQYEEQV 382          
BLAST of mRNA_H-paniculata_contig27436.7509.1 vs. uniprot
Match: D8LJX3_ECTSI (Pathogenesis-related protein, class 1 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX3_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 4.690e-25
Identity = 58/118 (49.15%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    1 YAQTLTNSQNCGELFHSEREDRNGWGENLFLCGSTDTTKDCYSAGYAMNGFYDKEVTDGPVTTYLGHATQILWKDTQEVGCAVESCEKIEQSHTWRYSVLVCNYNPTGNYLGQYEEQI 354
            +A+ LT +Q    LFHS +E R G+GENL++C  +D+   CYS   AM G Y  EV    V  Y GHATQILWK T++VGC V  C      +T+    LVC Y+P GNY GQYEEQ+
Sbjct:  374 HAERLT-AQCSSSLFHSTQEQRYGYGENLYMCWGSDS---CYSHEKAMEGLYYDEVQFDSVLQYGGHATQILWKATEQVGCVVARCTNGGTPYTF----LVCQYDPPGNYGGQYEEQV 483          
BLAST of mRNA_H-paniculata_contig27436.7509.1 vs. uniprot
Match: D8LJW7_ECTSI (Pathogenesis-related protein, class 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW7_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 7.660e-24
Identity = 53/112 (47.32%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   25 QNCGELFHSEREDRNGWGENLFLCGSTDTTKDCYSAGYAMNGFYDKEVTDGPVTTYLGHATQILWKDTQEVGCAVESCEKIEQSHTWRYSVLVCNYNPTGNYLG--QYEEQI 354
            Q    LFHS RE R G+GENLF+C  TDT   CY+  YAM   Y +EV    VT Y+GHATQILWK T+ VGC +  C      +T+    LVC Y+P GN  G  +Y +++
Sbjct:  206 QCTSSLFHSTREQRYGYGENLFVCWGTDT---CYNHDYAMEHLYVEEVQFDDVTDYIGHATQILWKSTKNVGCVLAGCSNGGTPYTF----LVCQYDPAGNMGGDDEYRQEV 310          
BLAST of mRNA_H-paniculata_contig27436.7509.1 vs. uniprot
Match: A0A6H5JCL1_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL1_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.680e-20
Identity = 53/118 (44.92%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    1 YAQTLTNSQNCGELFHSEREDRNGWGENLFLCGSTDTTKDCYSAGYAMNGFYDKEVTDGPVTTYLGHATQILWKDTQEVGCAVESCEKIEQSHTWRYSVLVCNYNPTGNYLGQYEEQI 354
            +A+ LT +Q    LFHS +E R G+G NL++   +D+   CYS   A  G Y  EV    V  Y GHATQILWK  ++VGCA   C      H +    LVC Y+P GN  GQYEEQ+
Sbjct:  249 HAEGLT-AQCFSSLFHSTQEQRYGYGANLYIRWGSDS---CYSHKKATKGLYYDEVQSDSVLQYGGHATQILWKAAEQVGCAGARCTNGGTPHAF----LVCQYDPPGNSGGQYEEQV 358          
BLAST of mRNA_H-paniculata_contig27436.7509.1 vs. uniprot
Match: D8LQY8_ECTSI (SCP-domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY8_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 8.360e-18
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    1 YAQTLTNSQNCGELFHSEREDRNGWGENLFLCGSTDT-------TKDCYSAGYAMNGFYDKEVTDGPVTTYLGHATQILWKDTQEVGCAVESCEKIEQSHTWRYSVLVCNYNP 318
            YA  L +   CG    +E     G GEN+F+C ++ +       T  C+S   AM  FYD +V  GP +TY   ATQ+LWK T ++GCA+ +CEK   +    Y +LVC Y+P
Sbjct:  133 YADLLASESMCGS---AETAHSTGLGENVFVCAASSSLSGDGAPTAACFSPESAMEAFYDSQVGGGPTSTYGPRATQVLWKSTTQIGCALRACEKDGLT----YDILVCRYSP 238          
BLAST of mRNA_H-paniculata_contig27436.7509.1 vs. uniprot
Match: A0A6H5KE93_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE93_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.240e-17
Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = 1
Query:    1 YAQTLTNSQNCGELFHSEREDRNGWGENLFLCGSTDT-------TKDCYSAGYAMNGFYDKEVTDGPVTTYLGHATQILWKDTQEVGCAVESCEKIEQSHTWRYSVLVCNYNP 318
            YA  L +   CG    +E     G GEN+F+C ++ +       T  C+S   AM  FYD +V  G  +TY  +ATQ+LWK T ++GCA+ +CEK        Y +LVC Y+P
Sbjct:  116 YADVLASESMCGS---AEAAHSTGLGENVFVCAASSSFSGNGAPTSACFSPEIAMEAFYDSQVGGGSTSTYGPYATQVLWKSTTQIGCALRACEK----EGLTYDILVCRYSP 221          
BLAST of mRNA_H-paniculata_contig27436.7509.1 vs. uniprot
Match: A0A388JY83_CHABU (SCP domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JY83_CHABU)

HSP 1 Score: 74.7 bits (182), Expect = 1.010e-13
Identity = 39/117 (33.33%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    1 YAQTLTNSQNCGELFHSEREDRNGWGENLFLCGSTD----TTKDCYSAGYAMNGFYDKEVTDGPVTTYLGHATQILWKDTQEVGCAVESCEKIEQSHTWRYSVLVCNYNPTGNYLGQ 339
            +A+TL  ++ C E++H+      G+GENL++  S+     T  +   +       YD E          GH TQ++W++T+EVGCA+ SC  +    T+   + VC YNP GNY+G+
Sbjct:  152 WARTL--AETC-EMYHASDS---GYGENLYMAWSSGPIDITPTEVVQSWGGERVDYDYETNTCRADRQCGHYTQMVWRNTKEVGCAITSCTLVRDGETYNAQIAVCRYNPPGNYVGE 262          
BLAST of mRNA_H-paniculata_contig27436.7509.1 vs. uniprot
Match: A0A388JY18_CHABU (SCP domain-containing protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388JY18_CHABU)

HSP 1 Score: 72.0 bits (175), Expect = 1.430e-12
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 1
Query:    1 YAQTLTNSQNCGELFHSEREDRNGWGENLFLCGSTD----TTKDCYSAGYAMNGFYDKEVTDGPVTTYLGHATQILWKDTQEVGCAVESCEKIEQSHTWRYSVLVCNYNPTGNYLGQ 339
            +AQTL N+  C +++H+      G+GENL++  S+     T      A  A   +Y+            GH TQ++WK+T+EVGCA+ SC       ++   + VC Y+P GNY+GQ
Sbjct:  190 WAQTLANT--C-QMYHASNT---GYGENLYMAWSSGAINITASGVVGAWVAEKAYYNYATNTCAAGKVCGHYTQVVWKNTKEVGCAIASC----MYGSYNAQIAVCRYSPPGNYIGQ 296          
BLAST of mRNA_H-paniculata_contig27436.7509.1 vs. uniprot
Match: A0A1W1CJ58_9ZZZZ (SCP-like family protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A1W1CJ58_9ZZZZ)

HSP 1 Score: 69.3 bits (168), Expect = 3.010e-12
Identity = 35/89 (39.33%), Postives = 49/89 (55.06%), Query Frame = 1
Query:   73 WGENLFLCGSTDTTKDCYSAGYAMNGFYDKEVTDGPVTTYLGHATQILWKDTQEVGCAVESCEKIEQSHTWRYSVLVCNYNPTGNYLGQ 339
            +GENL+  G+  +  D  +A Y     Y+            GH TQ++WKDT EVGCA  S      S +W+ +++VC YNP GNY+GQ
Sbjct:   96 YGENLYASGAEASFVDAVNAWYREKAEYNTNTKTCNTGKTCGHYTQLIWKDTLEVGCAKSS------SASWK-TIVVCQYNPPGNYIGQ 177          
BLAST of mRNA_H-paniculata_contig27436.7509.1 vs. uniprot
Match: UPI001E27AB9C (venom allergen 5.02-like n=2 Tax=Coliadinae TaxID=42450 RepID=UPI001E27AB9C)

HSP 1 Score: 69.3 bits (168), Expect = 5.440e-12
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   76 GENLFLCGSTDTTKDCYSAGYAMNGFYD--KEVTDGPVTT-------YLGHATQILWKDTQEVGCAVESCEKIEQSHTWRYSVLVCNYNPTGNYLGQ 339
            GEN++  GSTD     ++   A+N +++  K+ T GP+T+        +GH TQ++W D+  +GC + S    EQ   W Y   VCNY P+GNYLG+
Sbjct:   96 GENIYWQGSTDKNLK-FNPENALNSWFNEHKDYTYGPLTSEQMQSKKMVGHYTQMVWSDSVYIGCGLSS----EQKDGWIYYYFVCNYGPSGNYLGE 187          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27436.7509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZI7_9PHAE7.130e-2649.15SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJX3_ECTSI4.690e-2549.15Pathogenesis-related protein, class 1 n=3 Tax=Ecto... [more]
D8LJW7_ECTSI7.660e-2447.32Pathogenesis-related protein, class 1 n=1 Tax=Ecto... [more]
A0A6H5JCL1_9PHAE5.680e-2044.92SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQY8_ECTSI8.360e-1838.94SCP-domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KE93_9PHAE1.240e-1738.05SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A388JY83_CHABU1.010e-1333.33SCP domain-containing protein n=1 Tax=Chara brauni... [more]
A0A388JY18_CHABU1.430e-1234.19SCP domain-containing protein n=2 Tax=Chara brauni... [more]
A0A1W1CJ58_9ZZZZ3.010e-1239.33SCP-like family protein n=1 Tax=hydrothermal vent ... [more]
UPI001E27AB9C5.440e-1238.14venom allergen 5.02-like n=2 Tax=Coliadinae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27436contigH-paniculata_contig27436:107..1101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue2.6e-21
Seed eggNOG ortholog2880.D8LJW8
KEGG koko:K19919,ko:K20412
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidase inhibitor activity
EggNOG OGsCOG2340@1,KOG3017@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04090,ko04131
Exons3
Model size354
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27436.7509.1prot_H-paniculata_contig27436.7509.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27436 107..1101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929828.242128-CDS-H-paniculata_contig27436:106..2601622929828.242128-CDS-H-paniculata_contig27436:106..260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27436 107..260 +
1691481029.1566503-CDS-H-paniculata_contig27436:106..2601691481029.1566503-CDS-H-paniculata_contig27436:106..260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27436 107..260 +
1622929828.2526608-CDS-H-paniculata_contig27436:673..8391622929828.2526608-CDS-H-paniculata_contig27436:673..839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27436 674..839 +
1691481029.1702855-CDS-H-paniculata_contig27436:673..8391691481029.1702855-CDS-H-paniculata_contig27436:673..839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27436 674..839 +
1622929828.2629983-CDS-H-paniculata_contig27436:1067..11011622929828.2629983-CDS-H-paniculata_contig27436:1067..1101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27436 1068..1101 +
1691481029.1781676-CDS-H-paniculata_contig27436:1067..11011691481029.1781676-CDS-H-paniculata_contig27436:1067..1101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27436 1068..1101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27436.7509.1

>prot_H-paniculata_contig27436.7509.1 ID=prot_H-paniculata_contig27436.7509.1|Name=mRNA_H-paniculata_contig27436.7509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
YAQTLTNSQNCGELFHSEREDRNGWGENLFLCGSTDTTKDCYSAGYAMNG
FYDKEVTDGPVTTYLGHATQILWKDTQEVGCAVESCEKIEQSHTWRYSVL
VCNYNPTGNYLGQYEEQI
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mRNA from alignment at H-paniculata_contig27436:107..1101+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27436.7509.1 ID=mRNA_H-paniculata_contig27436.7509.1|Name=mRNA_H-paniculata_contig27436.7509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=995bp|location=Sequence derived from alignment at H-paniculata_contig27436:107..1101+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGCGCAGACCCTCACCAACTCCCAAAACTGTGGAGAATTGTTCCATAG CGAGCGTGAGGATCGTAACGGCTGGGGGGAAAACTTGTTCTTGTGCGGCA GCACCGACACCACTAAAGACTGCTACTCGGCTGGCTACGCGATGAACGGA TTCTGTGAGTATCTCATGCATATGTAGGTTCAGTTTGTGTTTTAAGACAT ACAGAAATACAACAGATAAGAGTTGACTTCTGCCGCACTTGTTTCCGAAA ATGAGTACCTTCTGCAACCATGATGGAAGAATCATTGTAACGATGGACTA CTTATGCTCAACCCCTCAACACGTCGCGTGGGAATACCCCAAGTTTCCGG CGCAGCTGGGTCTTTTTCGTTTCTAGTTGGATGGTTTGGTTTCGGTGCGC GCTAGATGTGGCCTCCTGCTCACATGTTCACCATGATTGCTTTCGCACGA ACCAACGAAGTATTTTCCATCGTTTGTCCTATTCTGTTTTATATTGACGG ATAAATGCCCTCATTTATCACGATACATCCGTTCGTTGTGTTTGTTCGCC TTACCGGGTAATGGCAGATGACAAGGAAGTCACCGATGGACCGGTGACAA CCTACCTGGGACATGCCACCCAAATTCTGTGGAAGGACACACAGGAAGTG GGTTGTGCAGTGGAATCATGCGAGAAGATTGAACAGAGCCACACATGGCG ATACAGCGTCCTTGTTTGCAACTACAATCCCACGTGAGTTTCTGTGTTCT TCATGACTATATTGTCCATCTAATGCATGGTAATGCCCATCGAGGGTAAT GAAAATTTTAATGAGGCGATCGTCCAGGCTTGGTGCTCCTCCTCTCAATT CAGTCCCAACACTTGATTGGTTTTTGTGTTGTTCCCTAACCCGTCTCTCT CCCTCTCTCGTCATGTCATTCATCTCCAATGGCTTCCAATTCGGTTTTGT TTTATCATCAGTGGAAACTACCTCGGCCAGTATGAGGAGCAGATC
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Coding sequence (CDS) from alignment at H-paniculata_contig27436:107..1101+

>mRNA_H-paniculata_contig27436.7509.1 ID=mRNA_H-paniculata_contig27436.7509.1|Name=mRNA_H-paniculata_contig27436.7509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig27436:107..1101+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGCGCAGACCCTCACCAACTCCCAAAACTGTGGAGAATTGTTCCATAG
CGAGCGTGAGGATCGTAACGGCTGGGGGGAAAACTTGTTCTTGTGCGGCA
GCACCGACACCACTAAAGACTGCTACTCGGCTGGCTACGCGATGAACGGA
TTCTTACGCGCAGACCCTCACCAACTCCCAAAACTGTGGAGAATTGTTCC
ATAGCGAGCGTGAGGATCGTAACGGCTGGGGGGAAAACTTGTTCTTGTGC
GGCAGCACCGACACCACTAAAGACTGCTACTCGGCTGGCTACGCGATGAA
CGGATTCTATGACAAGGAAGTCACCGATGGACCGGTGACAACCTACCTGG
GACATGCCACCCAAATTCTGTGGAAGGACACACAGGAAGTGGGTTGTGCA
GTGGAATCATGCGAGAAGATTGAACAGAGCCACACATGGCGATACAGCGT
CCTTGTTTGCAACTACAATCCCACATGACAAGGAAGTCACCGATGGACCG
GTGACAACCTACCTGGGACATGCCACCCAAATTCTGTGGAAGGACACACA
GGAAGTGGGTTGTGCAGTGGAATCATGCGAGAAGATTGAACAGAGCCACA
CATGGCGATACAGCGTCCTTGTTTGCAACTACAATCCCACTGGAAACTAC
CTCGGCCAGTATGAGGAGCAGATCTGGAAACTACCTCGGCCAGTATGAGG
AGCAGATC
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