mRNA_H-paniculata_contig27433.7508.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27433.7508.1
Unique NamemRNA_H-paniculata_contig27433.7508.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27433.7508.1 vs. uniprot
Match: A0A6H5JBM1_9PHAE (PI3K/PI4K catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBM1_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 8.500e-54
Identity = 101/116 (87.07%), Postives = 105/116 (90.52%), Query Frame = 3
Query:  366 ESAPFKLTAEFVDLMDGPSSACFKGFREVCVQTFMTLRRKMPRLILLVETSSVGNAHLPCFGGKPEDVVGELRARFKPEVHDRAAMKHVHRLIDTSMHCWRTSWYDWYQKWSVGIG 713
            ESAPFKLTAEFVDLM GPSSACFKGFREVCVQTFM LRRKMPRLILL+ETSSVGNAHLPCFGG+PE VV ELRARFKPE HDRAAM HVHRLID SM CWRTSWYD YQ ++VGI 
Sbjct: 1117 ESAPFKLTAEFVDLMGGPSSACFKGFREVCVQTFMELRRKMPRLILLLETSSVGNAHLPCFGGRPEAVVAELRARFKPEAHDRAAMAHVHRLIDRSMGCWRTSWYDLYQSFAVGIA 1232          
BLAST of mRNA_H-paniculata_contig27433.7508.1 vs. uniprot
Match: A0A7S4DAE3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAE3_HETAK)

HSP 1 Score: 143 bits (360), Expect = 4.070e-34
Identity = 65/118 (55.08%), Postives = 88/118 (74.58%), Query Frame = 3
Query:  357 ASVESAPFKLTAEFVDLMDGPSSACFKGFREVCVQTFMTLRRKMPRLILLVETSSVGNAHLPCFGGKPEDVVGELRARFKPEVHDRAAMKHVHRLIDTSMHCWRTSWYDWYQKWSVGI 710
            A+ E APFKLT E+V+L+ G  SACF+ FR +CV  FM LRR+   +I LVE ++ GN HLPCFGG+PE+V+  L ARF+P++HDRAA  +VH L++ + H WRT++YD YQ+  VGI
Sbjct:  194 ANFERAPFKLTEEWVELLGGKGSACFRRFRGLCVDVFMALRRRYQEIIYLVEMTANGNEHLPCFGGQPEEVITALAARFRPDLHDRAAAAYVHHLVEDATHNWRTTFYDKYQQCFVGI 311          
BLAST of mRNA_H-paniculata_contig27433.7508.1 vs. uniprot
Match: A0A7S0C9D1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9D1_9STRA)

HSP 1 Score: 136 bits (343), Expect = 9.330e-33
Identity = 66/140 (47.14%), Postives = 92/140 (65.71%), Query Frame = 3
Query:  291 DKRCHLLRS*SNVVIAVVIAAAASVESAPFKLTAEFVDLMDGPSSACFKGFREVCVQTFMTLRRKMPRLILLVETSSVGNAHLPCFGGKPEDVVGELRARFKPEVHDRAAMKHVHRLIDTSMHCWRTSWYDWYQKWSVGI 710
            D + HL+               +  E+APFKLT +FV LMDGP+S  F  FRE+CV+TF+ LR++  ++ILLVE    GN  +PCF G+PE  V ELR RF+ +++DRA M++V+ LID S+  WRT WYD YQ++ VG+
Sbjct:   89 DNKGHLIHIDFGFYFLSSPGKNSGFEAAPFKLTRDFVRLMDGPNSRTFAKFRELCVRTFLALRKQCYQIILLVEMIMEGNEEMPCFRGRPEVAVRELRERFRLDLNDRACMEYVNNLIDESLENWRTRWYDRYQRYCVGV 228          
BLAST of mRNA_H-paniculata_contig27433.7508.1 vs. uniprot
Match: B7GCH9_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GCH9_PHATC)

HSP 1 Score: 132 bits (331), Expect = 1.720e-30
Identity = 62/140 (44.29%), Postives = 90/140 (64.29%), Query Frame = 3
Query:  291 DKRCHLLRS*SNVVIAVVIAAAASVESAPFKLTAEFVDLMDGPSSACFKGFREVCVQTFMTLRRKMPRLILLVETSSVGNAHLPCFGGKPEDVVGELRARFKPEVHDRAAMKHVHRLIDTSMHCWRTSWYDWYQKWSVGI 710
            D R H++                  ESAPFKLT +FV+L+DGP S  F+ FRE+CV+TF++LRR    +ILLVE    GN  L CF G+P++ + +LR RF+ +++DRA  ++V+ L+D S+  WRT WYD YQ++ VG+
Sbjct:  148 DNRGHIIHIDFGFFFLSSPGNNTGFESAPFKLTRDFVELLDGPDSRLFRTFRELCVRTFISLRRNCMEIILLVEMLKNGNEELNCFRGQPDNAIQQLRERFRLDLNDRACKEYVNSLVDASIENWRTDWYDRYQRYFVGV 287          
BLAST of mRNA_H-paniculata_contig27433.7508.1 vs. uniprot
Match: A0A7S1UDQ1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDQ1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.100e-29
Identity = 63/140 (45.00%), Postives = 84/140 (60.00%), Query Frame = 3
Query:  291 DKRCHLLRS*SNVVIAVVIAAAASVESAPFKLTAEFVDLMDGPSSACFKGFREVCVQTFMTLRRKMPRLILLVETSSVGNAHLPCFGGKPEDVVGELRARFKPEVHDRAAMKHVHRLIDTSMHCWRTSWYDWYQKWSVGI 710
            D   HL+      +I          E+APFKLTAE+V+L+ GP S  FK FR + V+ FM LRR+  R+ LL E  SVG  +LPCF G PE V+ EL  RF+P++ DRA   +VH L + ++  W T+WYD YQ+   GI
Sbjct:   10 DSEGHLIHIDFGFMIGNSPGGNIGFEAAPFKLTAEYVELLGGPDSVHFKAFRNLFVKAFMALRRRSHRITLLAEMVSVGAPNLPCFAGAPERVLSELAGRFRPDLPDRAVHDYVHWLFNNAVDNWTTNWYDKYQRCCSGI 149          
BLAST of mRNA_H-paniculata_contig27433.7508.1 vs. uniprot
Match: A0A7S1DD47_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DD47_CYCTE)

HSP 1 Score: 133 bits (334), Expect = 1.300e-29
Identity = 66/140 (47.14%), Postives = 88/140 (62.86%), Query Frame = 3
Query:  291 DKRCHLLRS*SNVVIAVVIAAAASVESAPFKLTAEFVDLMDGPSSACFKGFREVCVQTFMTLRRKMPRLILLVETSSVGNAHLPCFGGKPEDVVGELRARFKPEVHDRAAMKHVHRLIDTSMHCWRTSWYDWYQKWSVGI 710
            D R HL+                  ESAPFKLT +FVDLM GP+S  F+ FRE+C +TF+ LRR    + LLVE   VGN  L CF G+P+D V ELR RF+ +++DRA  ++V+ L+D S+  WRT WYD YQ++ VG+
Sbjct:  298 DNRGHLIHIDFGFFFLSSPGKNTGFESAPFKLTRDFVDLMGGPTSHHFRAFRELCARTFLCLRRHCYEITLLVEMLMVGNEDLNCFRGRPQDAVRELRERFRLDLNDRACHEYVNALVDESIENWRTRWYDRYQRFCVGV 437          
BLAST of mRNA_H-paniculata_contig27433.7508.1 vs. uniprot
Match: A0A1E7FL99_9STRA (Phophatdylinositol 4-kinase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FL99_9STRA)

HSP 1 Score: 127 bits (320), Expect = 4.810e-29
Identity = 61/140 (43.57%), Postives = 88/140 (62.86%), Query Frame = 3
Query:  291 DKRCHLLRS*SNVVIAVVIAAAASVESAPFKLTAEFVDLMDGPSSACFKGFREVCVQTFMTLRRKMPRLILLVETSSVGNAHLPCFGGKPEDVVGELRARFKPEVHDRAAMKHVHRLIDTSMHCWRTSWYDWYQKWSVGI 710
            D R HL+                  ESAPFKLT E+V+++ GP S  F  FR +C +TF+ LR+    +ILLVE   +GN  L CF G+P+D + ELR RF+ +++DRA +++V+ LID S+  WRT+WYD YQ++ VG+
Sbjct:  146 DNRGHLIHIDFGFFFLSSPGKNTGFESAPFKLTREWVNVLGGPDSHLFAVFRTLCYRTFIALRKNCHEIILLVEMLQLGNEELMCFRGRPDDAIRELRQRFRLDLNDRACLEYVNALIDESLENWRTNWYDRYQRYCVGV 285          
BLAST of mRNA_H-paniculata_contig27433.7508.1 vs. uniprot
Match: A0A1Z5J9Y5_FISSO (Phosphatidylinositol 4-kinase A n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J9Y5_FISSO)

HSP 1 Score: 135 bits (340), Expect = 6.080e-29
Identity = 62/118 (52.54%), Postives = 86/118 (72.88%), Query Frame = 3
Query:  357 ASVESAPFKLTAEFVDLMDGPSSACFKGFREVCVQTFMTLRRKMPRLILLVETSSVGNAHLPCFGGKPEDVVGELRARFKPEVHDRAAMKHVHRLIDTSMHCWRTSWYDWYQKWSVGI 710
            A  ESAPFKLT EFV+L+DGP+S  F+ +RE+CV+TF+ LRR    LILLVE   +GN  L CF G+P+  + E+R RF+ +++DRA  ++VH L+D S+  WRT WYD YQ++ VG+
Sbjct:  979 AGFESAPFKLTREFVELLDGPNSHLFRVYRELCVKTFIALRRHCMELILLVEMLKIGNEELKCFRGQPDLAIQEMRDRFRLDLNDRACREYVHSLVDDSIENWRTDWYDRYQRYFVGV 1096          
BLAST of mRNA_H-paniculata_contig27433.7508.1 vs. uniprot
Match: A0A7S0UFQ1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UFQ1_9STRA)

HSP 1 Score: 131 bits (329), Expect = 4.840e-28
Identity = 64/140 (45.71%), Postives = 88/140 (62.86%), Query Frame = 3
Query:  291 DKRCHLLRS*SNVVIAVVIAAAASVESAPFKLTAEFVDLMDGPSSACFKGFREVCVQTFMTLRRKMPRLILLVETSSVGNAHLPCFGGKPEDVVGELRARFKPEVHDRAAMKHVHRLIDTSMHCWRTSWYDWYQKWSVGI 710
            D R HL+                  ESAPFKLT EFV L+ GP S  F  FR +C +TF++LR+    +ILLVE   +GN  L CF G+PED + ELR RF+ +++DRA +++V+ LID S+  WRT+WYD YQ++ VG+
Sbjct:  509 DNRGHLIHIDFGFFFLSSPGKNTGFESAPFKLTREFVTLLGGPDSHLFGVFRSLCYRTFLSLRKHCHEIILLVEMLQLGNEDLNCFRGRPEDAIRELRQRFRLDLNDRACLEYVNALIDESLENWRTNWYDRYQRYCVGV 648          
BLAST of mRNA_H-paniculata_contig27433.7508.1 vs. uniprot
Match: A0A662YCA7_9STRA (PI3K/PI4K catalytic domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YCA7_9STRA)

HSP 1 Score: 131 bits (330), Expect = 9.050e-28
Identity = 62/115 (53.91%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  366 ESAPFKLTAEFVDLMDGPSSACFKGFREVCVQTFMTLRRKMPRLILLVETSSVGNAHLPCFGGKPEDVVGELRARFKPEVHDRAAMKHVHRLIDTSMHCWRTSWYDWYQKWSVGI 710
            E APFKLTA+FV+LM GP SA F+ FR +CV++F+  R+   R +LLVE    GN HLPCF G P+  V  L ARF+PE+   A    VH LID S+  WRT WYD YQ+W VG+
Sbjct:  884 EQAPFKLTADFVELMGGPRSASFRRFRSLCVRSFLVARKYRHRFVLLVEMMLHGNEHLPCFAGDPKGTVEALAARFQPELDLNACEDFVHELIDASLDNWRTRWYDKYQRWIVGV 998          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27433.7508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBM1_9PHAE8.500e-5487.07PI3K/PI4K catalytic domain-containing protein n=1 ... [more]
A0A7S4DAE3_HETAK4.070e-3455.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0C9D1_9STRA9.330e-3347.14Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B7GCH9_PHATC1.720e-3044.29Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A7S1UDQ1_9STRA1.100e-2945.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1DD47_CYCTE1.300e-2947.14Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1E7FL99_9STRA4.810e-2943.57Phophatdylinositol 4-kinase (Fragment) n=1 Tax=Fra... [more]
A0A1Z5J9Y5_FISSO6.080e-2952.54Phosphatidylinositol 4-kinase A n=2 Tax=Fistulifer... [more]
A0A7S0UFQ1_9STRA4.840e-2845.71Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A662YCA7_9STRA9.050e-2853.91PI3K/PI4K catalytic domain-containing protein n=2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27433contigH-paniculata_contig27433:269..3288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue2.2e-22
Seed eggNOG ortholog2850.Phatr16364
Preferred namePI4KB
KEGG rclassRC00002,RC00078
KEGG koko:K00888,ko:K19801
KEGG ReactionR03361
KEGG Pathwayko00562,ko01100,ko04011,ko04070,map00562,map01100,map04011,map04070
KEGG ModuleM00130
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000212,GO:0000226,GO:0000280,GO:0000910,GO:0000916,GO:0003674,GO:0003824,GO:0004430,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006810,GO:0006897,GO:0006898,GO:0006996,GO:0007010,GO:0007017,GO:0007030,GO:0007049,GO:0007051,GO:0007110,GO:0007111,GO:0007112,GO:0007140,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007423,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0010256,GO:0010259,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0023052,GO:0030029,GO:0030036,GO:0030258,GO:0030725,GO:0030726,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0033206,GO:0035295,GO:0035556,GO:0036213,GO:0042710,GO:0043062,GO:0043063,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043583,GO:0044010,GO:0044011,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044764,GO:0044837,GO:0045017,GO:0046474,GO:0046486,GO:0046488,GO:0046834,GO:0046854,GO:0048015,GO:0048017,GO:0048137,GO:0048232,GO:0048285,GO:0048471,GO:0048513,GO:0048609,GO:0048731,GO:0048839,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051301,GO:0051321,GO:0051703,GO:0051704,GO:0051716,GO:0052742,GO:0060872,GO:0061640,GO:0061982,GO:0061983,GO:0065007,GO:0071704,GO:0071840,GO:0071889,GO:0071944,GO:0090175,GO:0090407,GO:0090605,GO:0090609,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0140013,GO:1901576,GO:1903046,GO:1905330,GO:2000026,GO:2000027
EggNOG free text desc.Belongs to the PI3 PI4-kinase family
EggNOG OGs2XFPB@2836,COG5032@1,KOG0903@2759
EC2.7.1.67
COG Functional cat.G
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons3
Model size2294
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27433.7508.1prot_H-paniculata_contig27433.7508.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27433 676..1833 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929828.083651-UTR-H-paniculata_contig27433:268..6751622929828.083651-UTR-H-paniculata_contig27433:268..675Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27433 269..675 +
1691481029.1078281-UTR-H-paniculata_contig27433:268..6751691481029.1078281-UTR-H-paniculata_contig27433:268..675Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27433 269..675 +
1622929828.2092566-UTR-H-paniculata_contig27433:1833..32881622929828.2092566-UTR-H-paniculata_contig27433:1833..3288Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27433 1834..3288 +
1691481029.1465795-UTR-H-paniculata_contig27433:1833..32881691481029.1465795-UTR-H-paniculata_contig27433:1833..3288Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27433 1834..3288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929828.0977292-CDS-H-paniculata_contig27433:675..7171622929828.0977292-CDS-H-paniculata_contig27433:675..717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27433 676..717 +
1691481029.1180916-CDS-H-paniculata_contig27433:675..7171691481029.1180916-CDS-H-paniculata_contig27433:675..717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27433 676..717 +
1622929828.108331-CDS-H-paniculata_contig27433:1390..16521622929828.108331-CDS-H-paniculata_contig27433:1390..1652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27433 1391..1652 +
1691481029.1293519-CDS-H-paniculata_contig27433:1390..16521691481029.1293519-CDS-H-paniculata_contig27433:1390..1652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27433 1391..1652 +
1622929828.19571-CDS-H-paniculata_contig27433:1705..18331622929828.19571-CDS-H-paniculata_contig27433:1705..1833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27433 1706..1833 +
1691481029.1378307-CDS-H-paniculata_contig27433:1705..18331691481029.1378307-CDS-H-paniculata_contig27433:1705..1833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27433 1706..1833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27433.7508.1

>prot_H-paniculata_contig27433.7508.1 ID=prot_H-paniculata_contig27433.7508.1|Name=mRNA_H-paniculata_contig27433.7508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
MDGPSSACFKGFREVCVQTFMTLRRKMPRLILLVETSSVGNAHLPCFGGK
PEDVVGELRARFKPEVHDRAAMKHVHRLIDTSMHCWRTSWYDWYQKWSVG
IGVCVFVFYKNLSFLCFLNVIVVVVSGGGGGGRSRLPPVDIRT*
back to top

mRNA from alignment at H-paniculata_contig27433:269..3288+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27433.7508.1 ID=mRNA_H-paniculata_contig27433.7508.1|Name=mRNA_H-paniculata_contig27433.7508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3020bp|location=Sequence derived from alignment at H-paniculata_contig27433:269..3288+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTTTATTATATATGGGGAGTTAGGACGAGCTTAGGCTACTGTAAGTGGC GTGTGTGCACTTCGTGCTGCCCTTTCTCTGGTATGTGGTGTGCGACGTAC AACACACGGCAATATAATTGAATAGGTGTCATTATTTTTTGGTATTGATT GATTGTTTGAGTTGTGGTCGTGATTCAATGTTGTTGTTGTTGTTGTTGTT GTTGTTGCGCTTGTCCGCTGTCGTGTTTTTCGTTTTTTTCGGGGGGTTTT TTGGTCTTGGTGTATGCTGTTTTTGTTTTCTTCGAGTTGTGACAAACGTT GCCACTTGCTCAGGTCATGATCTAATGTTGTTATTGCTGTTGTTATTGCT GCTGCTGCTTCAGTCGAGTCTGCGCCTTTTAAGCTGACTGCCGAGTTCGT GGACTTGATGGATGGCCCGTCATCGGCGTGCTTCAAGGGGTTCCGTGAGG TACAAACATGAACCGTTTATTATTATTATTATTACTATGACGTAACGTTC GTCTTTTTGTTCGGTCCGTCTGAGAACAAAATGGTTGAGTATGGCATGAC TATTGGGGAAGTGGTGTTTTTTCTATGTTGATCTTTCGTTAACTCTAGGC GGGGGCCCCTTCGCGGCCCGAGGGTTCAAATTGAATAATGCGATTCCTGT TGTCCTTTGTCAAGAAAAGATAAGTAAATGCACCCATCCGACAAATAAAT AAGTGAATGATCAATCATTAAAATTGTACATAAAGCATGCATTGAAAACA TGTTCATATTTCTTGCCCTGTTTCTTCCTTCTCTGATACATATATATATA TATATATATATATCTCACTGTGAGTGAGTGATAGGCTGACTGCATACAAC AAAAAACGCTCTCAGCATGAATGCAAAACATGGCTGTGTATTAAGAGACC CTTGACCCCCTTGTTGATAAGTGCATAAACTTCCAAGTGTATATTAAAGC CAGCTTGATGACCACCTCAACATGTGTGCAATGGAGTGATAATAACTTGA GGTTCAGAGTTGGAGTTCAAGTGACCCCCCCTCCCCTCCCCTCCCCCCCG CGCGCTGCCCCCACCGCCGTCTCTCCCAAAAACTCCACGTGGAAATCGAT CGATCTGTTTACCAACACACAGGTGTGCGTACAAACGTTCATGACGCTGC GCCGAAAAATGCCGCGCCTCATTCTCCTGGTGGAGACGTCTTCGGTAGGA AACGCGCACCTGCCGTGCTTCGGAGGTAAGCCCGAGGACGTGGTGGGCGA GCTGCGAGCGAGGTTCAAGCCGGAGGTGCACGACCGGGCCGCCATGAAGC ACGTGCACCGCTTGATCGACACGTCCATGCACTGCTGGCGGACGTCGTGG TATGACTGGTATCAGAAGTGGTCTGTGGGGATTGCTGTGTGAAGAGGTGT TTTTTTTTTGTTTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTT TGTTTTTTACAAAAATTTGTCGTTTTTGTGTTTTCTTAACGTTATCGTTG TCGTTGTCAGTGGCGGCGGCGGCGGCGGAAGGTCGCGGCTACCGCCAGTG GACATACGTACCTAAGCCAGACAGACAGACCCCCTCGTGAAACTTATCCA TCCTCTCCATCATCGTCATCGTCATTACCATCACCAGTTTATTACAGCGT ATTGAGTGATGGAAATCTATCTGGCTTGTGACCCACCAGGGAGGTTGATG ACTGATTTGACGTTTTGGTCGGTCCCCCAGACTGACTGTCGAGTGGTTTG ATTTACGATTCAAGAAGATATTTTTTGGTTGATTGACTGATGGATGGAGG ATGGAGGACGGGCGGGAGCGGGGGGACGGCGTTGCACAACTGATTTGATG GGTTGATCTTGGAAGTGCGCTCGCAGGATCGGCTGCTGTTGGGATATCTT TACTCCGTCAATGCCCCCCAACCCTGTCACCCCGCCCACCCTCCCCCCTC GGGTGAGCGAGCGTCGATTTCCAATATGTTCTTACAAAAAACGCAATTTT GCCTATTTGGGCTCGTTATTCGGGGATGTTTCGGTTGTAGATTGGTGAAG TAATTTCAAGAATTGTGGATTTTCTTAATCCAGTAGCTGCTGCGCTTGAC GGTGAGATAGCCTGTATATTTATTTGGTTTCCGTGTGTGCTGGTTTTTTC TCTCGCGCGGGGGCGCGCTCGTGTGTGTGTGTGTGTGTCTGTTGACAGTT GTAGTAAAATTGTGATGATGTTGTGCATTTCCGTGTGTTGCACGTGTGCG TGTGTGCTATGGTTATCTTGCGATTTATTTTTTTTGGCGGATTTTCAAGG CTATTTATTACTAATGGGTTGCTGGCTTTTAAATCGTAGATTCGAGGGTT GGGTGTATTGAGTGTTGAGTCGAGGTCTATCCGTCTTCTCGCTCGTCCTT GATACATAGCTTTTATTTGTTATTGAGTGCTTTTCTTTTATCGTTAATCT GAAGAAAGAAAATTAGCCACTTGGTTAGTCACACATTCGGTAATTTGATG CAGCTGGCAGGCAGTATACATTCGTGTACCACTTCCTGATAATGTCTGTA CTGCCGGTTCTTCATTTGGGTGACTGGCTGCTGTGTTCTACGGTTTCGTT GACCAAGGTTTCCATCGTATGATACCAGCAGTAGAGCTCCTCTGTAAAAT TCAAGTACTTCGAGTGATGACAGGGATTATTTTTTTCCGAAACACACACG CACACATACACACACACACACACGGAATTATTTTATAAAGTACGTAGTGA AGCGAGCAAGCAGGACGGCATGTGTGAAGCATCCTACACTTTTAGTGATG TTTATTATGTGAGGTAGATCCCAACCCCTACCGCATAAGCCTTGAGCCTG TGCGATGTGATTGGTTCAGCTTCAGGGCACGAGTTGGATGCTGTCCTTAC GTAACCCCCCTCCTCCCCCCATGCATGTACGTGTTGCGATGGTATGTTGC TGGACGTTTTTTTTTTTTTTTTTTTTTTTTAACCCCCGGAAGGCTAGGCT GAAACCCTTACCGCTACTTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig27433:269..3288+

>mRNA_H-paniculata_contig27433.7508.1 ID=mRNA_H-paniculata_contig27433.7508.1|Name=mRNA_H-paniculata_contig27433.7508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig27433:269..3288+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGGCCCGTCATCGGCGTGCTTCAAGGGGTTCCGTGAGATGGATGG
CCCGTCATCGGCGTGCTTCAAGGGGTTCCGTGAGGTGTGCGTACAAACGT
TCATGACGCTGCGCCGAAAAATGCCGCGCCTCATTCTCCTGGTGGAGACG
TCTTCGGTAGGAAACGCGCACCTGCCGTGCTTCGGAGGTAAGCCCGAGGA
CGTGGTGGGCGAGCTGCGAGCGAGGTTCAAGCCGGAGGTGCACGACCGGG
CCGCCATGAAGCACGTGCACCGCTTGATCGACACGTCCATGCACTGCTGG
CGGACGTCGTGGTATGACTGGTATCAGAAGTGGTCTGTGGGGATTGGTGT
GCGTACAAACGTTCATGACGCTGCGCCGAAAAATGCCGCGCCTCATTCTC
CTGGTGGAGACGTCTTCGGTAGGAAACGCGCACCTGCCGTGCTTCGGAGG
TAAGCCCGAGGACGTGGTGGGCGAGCTGCGAGCGAGGTTCAAGCCGGAGG
TGCACGACCGGGCCGCCATGAAGCACGTGCACCGCTTGATCGACACGTCC
ATGCACTGCTGGCGGACGTCGTGGTATGACTGGTATCAGAAGTGGTCTGT
GGGGATTGGTGTGTGTGTGTTTGTTTTTTACAAAAATTTGTCGTTTTTGT
GTTTTCTTAACGTTATCGTTGTCGTTGTCAGTGGCGGCGGCGGCGGCGGA
AGGTCGCGGCTACCGCCAGTGGACATACGTACCTAAGTGTGTGTGTGTTT
GTTTTTTACAAAAATTTGTCGTTTTTGTGTTTTCTTAACGTTATCGTTGT
CGTTGTCAGTGGCGGCGGCGGCGGCGGAAGGTCGCGGCTACCGCCAGTGG
ACATACGTACCTAA
back to top