mRNA_H-paniculata_contig2732.7481.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2732.7481.1
Unique NamemRNA_H-paniculata_contig2732.7481.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2732.7481.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.160e-25
Identity = 48/78 (61.54%), Postives = 68/78 (87.18%), Query Frame = 3 
Query:  114 KVIAKKVGELRAKLPLSKLKIVIVLWQISSAFGEVTQVPFPPIYKQFLSVVGIFTFDLSWLLSASCINTTINFYHQLL 347
            K  A ++GE+ A+LPLSKLKIV+V+WQIS+AF EVT+VPFPP+Y++FLS++GIF+FDL W++SA+C+   I+FY +LL
Sbjct:  942 KTAAARIGEMLARLPLSKLKIVVVVWQISNAFAEVTKVPFPPVYEKFLSIIGIFSFDLGWMISAACLTAGIDFYDKLL 1019
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BLAST of mRNA_H-paniculata_contig2732.7481.1 vs. uniprot
Match: D7G5M2_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M2_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.880e-25
Identity = 47/75 (62.67%), Postives = 67/75 (89.33%), Query Frame = 3 
Query:  123 AKKVGELRAKLPLSKLKIVIVLWQISSAFGEVTQVPFPPIYKQFLSVVGIFTFDLSWLLSASCINTTINFYHQLL 347
            A +VGE+ A+LPLSKLKIV+V+WQIS+AF E+T+VPFPP+Y++FLS++GIF+FDL W++SA+C+   I+FY +LL
Sbjct:  677 AARVGEMLARLPLSKLKIVVVVWQISNAFAEITKVPFPPVYEKFLSIIGIFSFDLGWMMSAACLTAGIDFYDKLL 751
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BLAST of mRNA_H-paniculata_contig2732.7481.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 4.070e-25
Identity = 46/75 (61.33%), Postives = 67/75 (89.33%), Query Frame = 3 
Query:  123 AKKVGELRAKLPLSKLKIVIVLWQISSAFGEVTQVPFPPIYKQFLSVVGIFTFDLSWLLSASCINTTINFYHQLL 347
            A ++GE+ A+LPLSKLKIV+V+WQIS+AF E+T+VPFPP+Y++FLS++GIF+FDL W++SA+C+   I+FY +LL
Sbjct: 1294 AARIGEMLARLPLSKLKIVVVVWQISNAFAEITKVPFPPVYEKFLSIIGIFSFDLGWMISAACLTAGIDFYDKLL 1368
[Close]
BLAST of mRNA_H-paniculata_contig2732.7481.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.090e-25
Identity = 46/75 (61.33%), Postives = 67/75 (89.33%), Query Frame = 3 
Query:  123 AKKVGELRAKLPLSKLKIVIVLWQISSAFGEVTQVPFPPIYKQFLSVVGIFTFDLSWLLSASCINTTINFYHQLL 347
            A ++GE+ A+LPLSKLKIVIV+WQIS+AF E+T+VPFPP+Y++FLS++GIF+FDL W++SA+C+   ++FY +LL
Sbjct: 1404 AARIGEMLARLPLSKLKIVIVVWQISNAFAEITKVPFPPVYEKFLSIIGIFSFDLGWMISAACLTAGVDFYDKLL 1478
[Close]
BLAST of mRNA_H-paniculata_contig2732.7481.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.240e-23
Identity = 47/73 (64.38%), Postives = 63/73 (86.30%), Query Frame = 3 
Query:  129 KVGELRAKLPLSKLKIVIVLWQISSAFGEVTQVPFPPIYKQFLSVVGIFTFDLSWLLSASCINTTINFYHQLL 347
            +V  L A LPLSKLKIVIV+WQI+SAF ++T+ PFPPIY++FLS++GIF+FDL W+LSA+C+ T I+FY +LL
Sbjct: 1251 RVANLLAALPLSKLKIVIVVWQITSAFADITKAPFPPIYEKFLSIIGIFSFDLGWILSAACLTTGIDFYDKLL 1323
[Close]
BLAST of mRNA_H-paniculata_contig2732.7481.1 vs. uniprot
Match: D7FXY9_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.870e-15
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 3 
Query:  129 KVGELRAKLPLSKLKIVIVLWQISSAFGEVTQVPFPPIYKQFLSVVGIFTFDLSWLLSASCINTTINFYHQLL 347
            +V  L A LPLSKLKIVI          ++T+ PFPPIY++FLS++GIF+FDL W+LSA+C+ T I+FY +LL
Sbjct: 1068 RVANLLAALPLSKLKIVI----------DITKAPFPPIYEKFLSIIGIFSFDLGWILSAACLTTGIDFYDKLL 1130
[Close]
BLAST of mRNA_H-paniculata_contig2732.7481.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.870e-15
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = 3 
Query:   66 GTSTSRSVQEKEEDTLKVIAKKVGELRAKLPLSKLKIVIVLWQISSAFGEVTQVPFPPIYKQFLSVVGIFTFDLSWLLSASCINTTINFYHQLL 347
            G   SR+  +K++D      ++V  L   LPLSKLKIVI          ++T+ PFPPIY++FLS++GIF+FDL W+LSA+C+ T I+FY +LL
Sbjct: 1010 GQGNSRAGNDKDDDAS---PRRVANLLTALPLSKLKIVI----------DITKAPFPPIYEKFLSIIGIFSFDLGWILSAACLTTGIDFYDKLL 1090
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BLAST of mRNA_H-paniculata_contig2732.7481.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.140e-13
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 3 
Query:  129 KVGELRAKLPLSKLKIVIVLWQISSAFGEVTQVPFPPIYKQFLSVVGIFTFDLSWLLSASCINTTINFYHQLL 347
            K+    A+LP+ KLKI++V+WQI S F  +T V FPP Y +FLS + + +FDL  +LSASC+   ++FY  LL
Sbjct: 1098 KIKRWAARLPMDKLKILVVVWQILSVFPSITAVDFPPAYARFLSWIDMLSFDLGHVLSASCVFPVMDFYQSLL 1170
[Close]
BLAST of mRNA_H-paniculata_contig2732.7481.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.140e-13
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 3 
Query:  129 KVGELRAKLPLSKLKIVIVLWQISSAFGEVTQVPFPPIYKQFLSVVGIFTFDLSWLLSASCINTTINFYHQLL 347
            K+    A+LP+ K+KI++V+WQI S F  +T V FPP Y +FLS + + +FDL  +LSASC+   ++FY +LL
Sbjct: 1105 KIKRWAARLPMDKIKILVVVWQILSVFPSITAVDFPPAYARFLSWINMLSFDLEHVLSASCVFPVMDFYQRLL 1177
[Close]
BLAST of mRNA_H-paniculata_contig2732.7481.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.700e-11
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 3 
Query:  120 IAKKVGELRAKLPLSKLKIVIVLWQISSAFGEVTQVPFPPIYKQFLSVVGIFTFDLSWLLSASCINTTINFYHQLL 347
            I +K+    A+LP+ KLKI++V+WQI + F  +T   FPP Y QFLS++     D+  + S +CI   ++FY +LL
Sbjct:  607 IGEKIKRWTARLPMDKLKILVVVWQILTVFPSITGAEFPPAYAQFLSIIDFINLDIGSIFSGTCILPRVSFYQRLL 682
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2732.7481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G0A8_ECTSI1.160e-2561.54Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7G5M2_ECTSI2.880e-2562.67Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
D7G0B0_ECTSI4.070e-2561.33Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JRA9_9PHAE4.090e-2561.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4A5_9PHAE1.240e-2364.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXY9_ECTSI2.870e-1554.79Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G119_ECTSI2.870e-1546.81Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FRH4_ECTSI4.140e-1347.95Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH3_ECTSI4.140e-1346.58Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JCK8_9PHAE1.700e-1140.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2732contigH-paniculata_contig2732:14363..15405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue6.5e-09
Seed eggNOG ortholog2880.D7G5Y7
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size350
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2732.7481.1prot_H-paniculata_contig2732.7481.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2732 14371..15405 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.2903268-UTR-H-paniculata_contig2732:14362..143701622929824.2903268-UTR-H-paniculata_contig2732:14362..14370Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2732 14363..14370 +
1691481027.5506427-UTR-H-paniculata_contig2732:14362..143701691481027.5506427-UTR-H-paniculata_contig2732:14362..14370Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2732 14363..14370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.308422-CDS-H-paniculata_contig2732:14370..145451622929824.308422-CDS-H-paniculata_contig2732:14370..14545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 14371..14545 +
1691481027.5670254-CDS-H-paniculata_contig2732:14370..145451691481027.5670254-CDS-H-paniculata_contig2732:14370..14545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 14371..14545 +
1622929824.3311398-CDS-H-paniculata_contig2732:15007..150301622929824.3311398-CDS-H-paniculata_contig2732:15007..15030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 15008..15030 +
1691481027.57604-CDS-H-paniculata_contig2732:15007..150301691481027.57604-CDS-H-paniculata_contig2732:15007..15030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 15008..15030 +
1622929824.3477135-CDS-H-paniculata_contig2732:15261..154051622929824.3477135-CDS-H-paniculata_contig2732:15261..15405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 15262..15405 +
1691481027.5861185-CDS-H-paniculata_contig2732:15261..154051691481027.5861185-CDS-H-paniculata_contig2732:15261..15405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 15262..15405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2732.7481.1

>prot_H-paniculata_contig2732.7481.1 ID=prot_H-paniculata_contig2732.7481.1|Name=mRNA_H-paniculata_contig2732.7481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MPAGKAPEGANSRAKSTRSGTSTSRSVQEKEEDTLKVIAKKVGELRAKLP
LSKLKIVIVLWQISSAFGEVTQVPFPPIYKQFLSVVGIFTFDLSWLLSAS
CINTTINFYHQLL*
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mRNA from alignment at H-paniculata_contig2732:14363..15405+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2732.7481.1 ID=mRNA_H-paniculata_contig2732.7481.1|Name=mRNA_H-paniculata_contig2732.7481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1043bp|location=Sequence derived from alignment at H-paniculata_contig2732:14363..15405+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTGTGATGCCAGCAGGGAAAGCACCGGAAGGGGCCAACAGCAGGGCA
AAATCAACTAGGAGTGGAACCAGCACGAGTAGATCAGTGCAAGAAAAGGA
GGAGGATACGCTCAAAGTTATTGCGAAGAAGGTCGGAGAGCTACGGGCGA
AGCTACCGTTGTCCAAACTCAAGATCGTTATTGGTTAGTGCCGTGGGGTT
CTTTGCCCTGTCCGTTTTGTTGTGACGAAAATCCTGTTCCACAGGAGATT
GGTTTACCGTAGTTCTACGTGCACTCACCGCTCCGTTTTTTATCGTTTCC
CGGCGTAGTCATACCTATCTAGATCAGCAGTGTAAACGAACGCGAGAAAG
GTTGGAAGTGACAAAATATTGGTGATGGTACGAAATCTCATTTGATTTTC
TTCACCTCCGGCAGCAAGCAGGTATATCGGATGCACCTCCGCATGTCTTC
CCATCGGTGTTCAAGAACATCGCCATCTTCGCTCTTGTTCATCTCACCAC
ACCGTTAATGCATCTCCAATCTCATGTCGTGATGCCCTTTCTAACACGCT
TCGCTGTTGTCCCGCTGCATTTATTTTGCTTGTGGTGTCCGCGGTTTGTC
CATCGTCTGCGTGCCCTTGCTCGGTGGCTGACACTGTTTGACCAGTGTTG
TGGCAGATTTCTAGCGCGGTGAGGGAGAATTTATAGAAGACGGGAGTAAA
ATAAGTACTTGGTATCTGACCCCTACGGCCTTGATAGCTAATACCAACTT
GGACTTTGAATGGTAATATAAAGTTCAGGAGCAGGAACACCGAACGACCG
CTTTTGCGATTTGTCACCTGCCACGTTGCTTTGCCGTTTCTCTCTGTACC
CACGTCATCTCATCTCATGCGCTCCTCCATGATTTTTTTCCTGTCTCAGT
TTGGGGAGGTTACGCAGGTGCCGTTTCCGCCAATATACAAGCAGTTCTTG
TCGGTCGTGGGCATCTTCACGTTCGACCTGAGCTGGTTGCTTTCTGCGTC
TTGCATCAACACAACCATCAACTTCTACCACCAGCTGCTGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2732:14363..15405+

>mRNA_H-paniculata_contig2732.7481.1 ID=mRNA_H-paniculata_contig2732.7481.1|Name=mRNA_H-paniculata_contig2732.7481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig2732:14363..15405+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAGCAGGGAAAGCACCGGAAGGGGCCAACAGCAGGGCAAAATCAAC
TAGGAGTGGAACCAGCACGAGTAGATCAGTGCAAGAAAAGGAGGAGGATA
CGCTCAAAGTTATTGCGAAGAAGGTCGGAGAGCTACGGGCGAAGCTACCG
TTGTCCAAACTCAAGATCGTTATTGATGCCAGCAGGGAAAGCACCGGAAG
GGGCCAACAGCAGGGCAAAATCAACTAGGAGTGGAACCAGCACGAGTAGA
TCAGTGCAAGAAAAGGAGGAGGATACGCTCAAAGTTATTGCGAAGAAGGT
CGGAGAGCTACGGGCGAAGCTACCGTTGTCCAAACTCAAGATCGTTATTG
TGTTGTGGCAGATTTCTAGCGCGTGTTGTGGCAGATTTCTAGCGCGTTTG
GGGAGGTTACGCAGGTGCCGTTTCCGCCAATATACAAGCAGTTCTTGTCG
GTCGTGGGCATCTTCACGTTCGACCTGAGCTGGTTGCTTTCTGCGTCTTG
CATCAACACAACCATCAACTTCTACCACCAGCTGCTGTAATTTGGGGAGG
TTACGCAGGTGCCGTTTCCGCCAATATACAAGCAGTTCTTGTCGGTCGTG
GGCATCTTCACGTTCGACCTGAGCTGGTTGCTTTCTGCGTCTTGCATCAA
CACAACCATCAACTTCTACCACCAGCTGCTGTAA
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