mRNA_H-paniculata_contig27251.7457.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27251.7457.1
Unique NamemRNA_H-paniculata_contig27251.7457.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27251.7457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27251contigH-paniculata_contig27251:2097..2947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size851
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27251.7457.1prot_H-paniculata_contig27251.7457.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27251 2254..2727 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929821.5296988-UTR-H-paniculata_contig27251:2096..22531622929821.5296988-UTR-H-paniculata_contig27251:2096..2253Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27251 2097..2253 +
1691481026.3804934-UTR-H-paniculata_contig27251:2096..22531691481026.3804934-UTR-H-paniculata_contig27251:2096..2253Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27251 2097..2253 +
1622929821.5666437-UTR-H-paniculata_contig27251:2727..29471622929821.5666437-UTR-H-paniculata_contig27251:2727..2947Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27251 2728..2947 +
1691481026.4045715-UTR-H-paniculata_contig27251:2727..29471691481026.4045715-UTR-H-paniculata_contig27251:2727..2947Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27251 2728..2947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929821.546389-CDS-H-paniculata_contig27251:2253..27271622929821.546389-CDS-H-paniculata_contig27251:2253..2727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27251 2254..2727 +
1691481026.3945272-CDS-H-paniculata_contig27251:2253..27271691481026.3945272-CDS-H-paniculata_contig27251:2253..2727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27251 2254..2727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27251.7457.1

>prot_H-paniculata_contig27251.7457.1 ID=prot_H-paniculata_contig27251.7457.1|Name=mRNA_H-paniculata_contig27251.7457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MVAHPQEPKAQLQQRQHCRERTFLRGCDLALLQRKQNTKFSHLLHLEYNA
PLWKNKIYKQNARSFSYSLNRALNYVLPSADAIFSGGTLNKKIMFATTEC
APSVSTAHIRTLGHSIELQNKTQPSDRDTLTLKPIGARSIIWRVSCSCAL
PTLQRRL*
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mRNA from alignment at H-paniculata_contig27251:2097..2947+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27251.7457.1 ID=mRNA_H-paniculata_contig27251.7457.1|Name=mRNA_H-paniculata_contig27251.7457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=851bp|location=Sequence derived from alignment at H-paniculata_contig27251:2097..2947+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACTCTGTTCATACGAGTTGCCCGCCTCCGAACGCTAATATATCAAGCC
CGAAGGGTTCACCGTATACCGATTAGGCCACGGGAGGTGAAGCGCTACAT
TCACACAACATTCATCGCGCAATTTGCATATGTATTTACCCACCCATCGC
CCGCTAAATGGTAGCTCATCCACAAGAGCCGAAGGCGCAGTTGCAGCAAA
GACAACATTGTCGCGAACGAACATTTCTCCGAGGATGTGATCTAGCTCTT
CTTCAACGGAAACAAAATACAAAATTCAGTCATTTATTGCACTTAGAATA
TAATGCGCCTCTATGGAAAAACAAAATATATAAACAGAATGCACGGAGCT
TCTCCTACAGCTTGAACCGAGCTTTAAATTATGTCCTCCCAAGCGCAGAT
GCCATATTTTCCGGTGGTACCCTAAACAAGAAAATTATGTTCGCTACGAC
GGAGTGCGCTCCATCTGTGTCCACTGCTCACATACGTACTTTGGGGCATT
CAATTGAACTCCAAAACAAAACACAACCCTCAGACCGTGATACCCTCACA
CTGAAACCTATCGGAGCACGCAGCATTATATGGCGTGTATCATGTTCCTG
CGCATTGCCCACACTACAACGCAGACTCTAGTCCAGAGCAGGCTTTACGG
AGTACGCCACAGCATGTGGAATATTGAATCTGAAAATATCCATCACGAAA
CCGATCGATATACTTTGACCATCACACACTATTTCGACAGCCCACTCACA
AAGGCGACAACGAAGTTGCAATATATACGATCCAGACGCGAAAATGAGCA
TTACCCCGACGAGTGCCGTGGCTCTTGTCTTGACATTATAAAAACAAAAT
C
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Coding sequence (CDS) from alignment at H-paniculata_contig27251:2097..2947+

>mRNA_H-paniculata_contig27251.7457.1 ID=mRNA_H-paniculata_contig27251.7457.1|Name=mRNA_H-paniculata_contig27251.7457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig27251:2097..2947+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGCTCATCCACAAGAGCCGAAGGCGCAGTTGCAGCAAAGACAACA
TTGTCGCGAACGAACATTTCTCCGAGGATGTGATCTAGCTCTTCTTCAAC
GGAAACAAAATACAAAATTCAGTCATTTATTGCACTTAGAATATAATGCG
CCTCTATGGAAAAACAAAATATATAAACAGAATGCACGGAGCTTCTCCTA
CAGCTTGAACCGAGCTTTAAATTATGTCCTCCCAAGCGCAGATGCCATAT
TTTCCGGTGGTACCCTAAACAAGAAAATTATGTTCGCTACGACGGAGTGC
GCTCCATCTGTGTCCACTGCTCACATACGTACTTTGGGGCATTCAATTGA
ACTCCAAAACAAAACACAACCCTCAGACCGTGATACCCTCACACTGAAAC
CTATCGGAGCACGCAGCATTATATGGCGTGTATCATGTTCCTGCGCATTG
CCCACACTACAACGCAGACTCTAGATGGTAGCTCATCCACAAGAGCCGAA
GGCGCAGTTGCAGCAAAGACAACATTGTCGCGAACGAACATTTCTCCGAG
GATGTGATCTAGCTCTTCTTCAACGGAAACAAAATACAAAATTCAGTCAT
TTATTGCACTTAGAATATAATGCGCCTCTATGGAAAAACAAAATATATAA
ACAGAATGCACGGAGCTTCTCCTACAGCTTGAACCGAGCTTTAAATTATG
TCCTCCCAAGCGCAGATGCCATATTTTCCGGTGGTACCCTAAACAAGAAA
ATTATGTTCGCTACGACGGAGTGCGCTCCATCTGTGTCCACTGCTCACAT
ACGTACTTTGGGGCATTCAATTGAACTCCAAAACAAAACACAACCCTCAG
ACCGTGATACCCTCACACTGAAACCTATCGGAGCACGCAGCATTATATGG
CGTGTATCATGTTCCTGCGCATTGCCCACACTACAACGCAGACTCTAG
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