mRNA_H-paniculata_contig27136.7425.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27136.7425.1
Unique NamemRNA_H-paniculata_contig27136.7425.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27136.7425.1 vs. uniprot
Match: D8LIL7_ECTSI (Protein phosphatase 1, regulatory subunit, and related proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL7_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 4.950e-25
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:   37 QGNPVCREVEYRFTVLAYIKNITYHDYATVDPAEVLQAKEQYQDELLELQEKE 195
            +GNPVCREVEYRFTVLAYIKNITYHDY TVDPAEVLQAKEQYQDELLELQEKE
Sbjct:  168 EGNPVCREVEYRFTVLAYIKNITYHDYGTVDPAEVLQAKEQYQDELLELQEKE 220
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BLAST of mRNA_H-paniculata_contig27136.7425.1 vs. uniprot
Match: A0A835Z751_9STRA (Protein phosphatase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z751_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.070e-16
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:   37 QGNPVCREVEYRFTVLAYIKNITYHDYATVDPAEVLQAKEQYQDELLELQEKE 195
            +GNPVC+E +YRFT LAY+K + +HDY  VDP+EV QA+EQ+QDELL+LQEKE
Sbjct:  170 EGNPVCKEADYRFTALAYLKAMKFHDYTMVDPSEVEQAREQFQDELLDLQEKE 222
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BLAST of mRNA_H-paniculata_contig27136.7425.1 vs. uniprot
Match: A0A7S2UTU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTU5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.400e-16
Identity = 33/53 (62.26%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:   37 QGNPVCREVEYRFTVLAYIKNITYHDYATVDPAEVLQAKEQYQDELLELQEKE 195
            +GNPVCRE EYR T LAY++ + Y DYA VDPAEV Q++EQYQD++++++EKE
Sbjct:   42 EGNPVCREPEYRATALAYVETLKYFDYAMVDPAEVTQSREQYQDDIMDVEEKE 94
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BLAST of mRNA_H-paniculata_contig27136.7425.1 vs. uniprot
Match: A0A2D4C582_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C582_PYTIN)

HSP 1 Score: 68.9 bits (167), Expect = 6.170e-12
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    1 LSILGGYLPFLCQGNPVCREVEYRFTVLAYIKNITYHDYATVDPAEVLQAKEQYQDELLELQE 189
            L +L G       GNPVC + EYR  +LA++  + Y DYA VDP+EVLQA+EQYQDEL EL+E
Sbjct:  154 LKVLEGLRVLNLSGNPVCSDPEYRPFLLAHLDKLQYLDYALVDPSEVLQAREQYQDELEELKE 216
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BLAST of mRNA_H-paniculata_contig27136.7425.1 vs. uniprot
Match: A0A2R5GLX3_9STRA (Dynein regulatory complex subunit 3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLX3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.030e-10
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   37 QGNPVCREVEYRFTVLAYIKNITYHDYATVDPAEVLQAKEQYQDELLELQEKE 195
            +GNPVC + EYR  VLAY+  + Y DYA ++  EV+ A+EQ+QDELLE QE++
Sbjct:  211 EGNPVCNDPEYRMFVLAYLDRLKYFDYALIEANEVVSAREQFQDELLEAQERD 263
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BLAST of mRNA_H-paniculata_contig27136.7425.1 vs. uniprot
Match: A0A7S4ICJ4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4ICJ4_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 1.220e-10
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:   40 GNPVCREVEYRFTVLAYIKNITYHDYATVDPAEVLQAKEQYQDELLELQEKEVN 201
            GNP C+E EYR  VLA++K + Y DY  VD   V+ AKEQYQDELL+L+E+E +
Sbjct:   68 GNPFCQETEYRAYVLAHLKYLKYLDYRLVDEQAVISAKEQYQDELLDLEEQETS 121
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BLAST of mRNA_H-paniculata_contig27136.7425.1 vs. uniprot
Match: F0YI88_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI88_AURAN)

HSP 1 Score: 65.1 bits (157), Expect = 1.400e-10
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   37 QGNPVCREVEYRFTVLAYIKNITYHDYATVDPAEVLQAKEQYQDELLELQEKE 195
            +GNPV RE EYR  VLAY+ ++TY DY+ V   E + A+EQYQDELL+++EKE
Sbjct:  168 EGNPVSREGEYRMYVLAYLNDLTYLDYSMVMKTETVAAREQYQDELLDVEEKE 220
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BLAST of mRNA_H-paniculata_contig27136.7425.1 vs. uniprot
Match: A0A7S2CTN6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTN6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.400e-10
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   37 QGNPVCREVEYRFTVLAYIKNITYHDYATVDPAEVLQAKEQYQDELLELQEKE 195
            +GNPV RE EYR  VLAY+  + Y DYA V  +EV+ A+EQYQDELL+++EKE
Sbjct:  205 EGNPVSRESEYRMYVLAYLIELKYLDYAMVVKSEVVSAREQYQDELLDVEEKE 257
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BLAST of mRNA_H-paniculata_contig27136.7425.1 vs. uniprot
Match: A0A418AWR8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AWR8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.370e-10
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   37 QGNPVCREVEYRFTVLAYIKNITYHDYATVDPAEVLQAKEQYQDELLELQE 189
            +GNPVC + EYR  VLA++  + Y DY+ VD AEV+QA+EQYQDEL E++E
Sbjct:  153 EGNPVCSDPEYRSFVLAHLDKLKYLDYSLVDMAEVVQAREQYQDELEEMKE 203
[Close]
BLAST of mRNA_H-paniculata_contig27136.7425.1 vs. uniprot
Match: F0YL22_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL22_AURAN)

HSP 1 Score: 63.9 bits (154), Expect = 3.550e-10
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   37 QGNPVCREVEYRFTVLAYIKNITYHDYATVDPAEVLQAKEQYQDELLELQEKE 195
            +GNPV +E EYR  VLAY+ ++TY DY+ V   E + A+EQYQDELL+++EKE
Sbjct:  124 EGNPVSKEGEYRMYVLAYLNDLTYLDYSMVVKTETVAAREQYQDELLDVEEKE 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27136.7425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIL7_ECTSI4.950e-2596.23Protein phosphatase 1, regulatory subunit, and rel... [more]
A0A835Z751_9STRA2.070e-1667.92Protein phosphatase 1 n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2UTU5_9STRA8.400e-1662.26Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A2D4C582_PYTIN6.170e-1255.56Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A2R5GLX3_9STRA1.030e-1054.72Dynein regulatory complex subunit 3 n=1 Tax=Hondae... [more]
A0A7S4ICJ4_9EUKA1.220e-1057.41Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]
F0YI88_AURAN1.400e-1058.49Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2CTN6_9STRA1.400e-1060.38Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A418AWR8_9STRA2.370e-1058.82Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
F0YL22_AURAN3.550e-1056.60Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27136contigH-paniculata_contig27136:2319..3171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue2.8e-21
Seed eggNOG ortholog2880.D8LIL7
Preferred namelrrc48
KEGG koko:K11092,ko:K19753
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0001539,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0008150,GO:0009987,GO:0032838,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0048870,GO:0051179,GO:0051674,GO:0060285,GO:0097014,GO:0099568,GO:0120025,GO:0120038
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko04812
Exons2
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929817.048872-CDS-H-paniculata_contig27136:2318..23931622929817.048872-CDS-H-paniculata_contig27136:2318..2393Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27136 2319..2393 -
1691481024.3660493-CDS-H-paniculata_contig27136:2318..23931691481024.3660493-CDS-H-paniculata_contig27136:2318..2393Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27136 2319..2393 -
1622929817.0593877-CDS-H-paniculata_contig27136:3024..31711622929817.0593877-CDS-H-paniculata_contig27136:3024..3171Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27136 3025..3171 -
1691481024.379469-CDS-H-paniculata_contig27136:3024..31711691481024.379469-CDS-H-paniculata_contig27136:3024..3171Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27136 3025..3171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27136.7425.1prot_H-paniculata_contig27136.7425.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27136 2319..3171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27136.7425.1

>prot_H-paniculata_contig27136.7425.1 ID=prot_H-paniculata_contig27136.7425.1|Name=mRNA_H-paniculata_contig27136.7425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
LSILGGYLPFLCQGNPVCREVEYRFTVLAYIKNITYHDYATVDPAEVLQA
KEQYQDELLELQEKEVNVSISFR*
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mRNA from alignment at H-paniculata_contig27136:2319..3171-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27136.7425.1 ID=mRNA_H-paniculata_contig27136.7425.1|Name=mRNA_H-paniculata_contig27136.7425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=853bp|location=Sequence derived from alignment at H-paniculata_contig27136:2319..3171- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATCTATTTTGGGGGGTTATCTCCCTTTTCTCTGCCAGGGGAACCCCGT
GTGTCGCGAGGTGGAGTATCGCTTTACCGTCCTCGCGTACATCAAGAACA
TCACCTACCACGACTACGCAACGGTAGACCCCGCGGAAGTCTTACAGGTG
TGGGCTATGGAGAATGGCTGTGATGCAGCCAATAGTACGTGTCGTTTGTT
TTCGTCTGTGTGAAGCCTCGAGTTCATATCACGGTTAGCCTGAAAAGTCT
GTCGACTCACGTACAAGAGACGCGGGTAGTTCAGACAAATTGAATTTTTC
TAGTTGGTGCCTTCATCGAGCATGTGTATCTATCGGAGAGCGCCCCAAAA
GCCATCCTTCAATATATATATATATATAATGTACGAGTATAGACCCTTGC
ATGTCACGATTCACAATCGTATGTATCGGGAACCATCATACCGTCTGTCT
GTTGATATAATAATCGATAGCGAACTTTTCTTTTTTTCGGCTCAGAAATT
TCTTCAAGATACCGGGGATACTGTGTCGAATGTGTACCCAATCCTGAACG
CAGCCAACGTATTAATTATTTTGTCGAAACTGAGCTAGCATTTGCCGTCT
AGATATTTTTGGAAGGAGGCAGCCAACGTATACTTGTATCCATACACATG
TATACCCGAAATGTATCAATGTCGGATCCAACCGGACACCGCCCTTCTCC
ATCTCTGTATTCCCCCGATTGCCTGGTGTACATTCGCGTACCCACCCCTG
TCCATCCCGTGGGATGGTCGTGGTCAAGGCTAAGGAACAGTACCAAGACG
AATTGTTGGAGCTTCAAGAGAAGGAGGTGAACGTATCTATTTCATTCCGT
TGA
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Coding sequence (CDS) from alignment at H-paniculata_contig27136:2319..3171-

>mRNA_H-paniculata_contig27136.7425.1 ID=mRNA_H-paniculata_contig27136.7425.1|Name=mRNA_H-paniculata_contig27136.7425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig27136:2319..3171- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATCTATTTTGGGGGGTTATCTCCCTTTTCTCTGCCAGGGGAACCCCGT
GTGTCGCGAGGTGGAGTATCGCTTTACCGTCCTCGCGTACATCAAGAACA
TCACCTACCACGACTACGCAACGGTAGACCCCGCGGAAGTCTTACAGCTA
TCTATTTTGGGGGGTTATCTCCCTTTTCTCTGCCAGGGGAACCCCGTGTG
TCGCGAGGTGGAGTATCGCTTTACCGTCCTCGCGTACATCAAGAACATCA
CCTACCACGACTACGCAACGGTAGACCCCGCGGAAGTCTTACAGGCTAAG
GAACAGTACCAAGACGAATTGTTGGAGCTTCAAGAGAAGGAGGTGAACGT
ATCTATTTCATTCCGTTGAGCTAAGGAACAGTACCAAGACGAATTGTTGG
AGCTTCAAGAGAAGGAGGTGAACGTATCTATTTCATTCCGTTGA
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