mRNA_H-paniculata_contig2711.7419.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2711.7419.1
Unique NamemRNA_H-paniculata_contig2711.7419.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2711.7419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2711contigH-paniculata_contig2711:2692..4402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size638
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2711.7419.1prot_H-paniculata_contig2711.7419.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2711 2740..4400 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929816.4493196-UTR-H-paniculata_contig2711:2691..27391622929816.4493196-UTR-H-paniculata_contig2711:2691..2739Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2711 2692..2739 -
1691481024.088592-UTR-H-paniculata_contig2711:2691..27391691481024.088592-UTR-H-paniculata_contig2711:2691..2739Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2711 2692..2739 -
1622929816.516032-UTR-H-paniculata_contig2711:4400..44021622929816.516032-UTR-H-paniculata_contig2711:4400..4402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2711 4401..4402 -
1691481024.1306853-UTR-H-paniculata_contig2711:4400..44021691481024.1306853-UTR-H-paniculata_contig2711:4400..4402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2711 4401..4402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929816.4680037-CDS-H-paniculata_contig2711:2739..29491622929816.4680037-CDS-H-paniculata_contig2711:2739..2949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2711 2740..2949 -
1691481024.0997636-CDS-H-paniculata_contig2711:2739..29491691481024.0997636-CDS-H-paniculata_contig2711:2739..2949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2711 2740..2949 -
1622929816.483575-CDS-H-paniculata_contig2711:3194..34311622929816.483575-CDS-H-paniculata_contig2711:3194..3431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2711 3195..3431 -
1691481024.108969-CDS-H-paniculata_contig2711:3194..34311691481024.108969-CDS-H-paniculata_contig2711:3194..3431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2711 3195..3431 -
1622929816.497042-CDS-H-paniculata_contig2711:4259..44001622929816.497042-CDS-H-paniculata_contig2711:4259..4400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2711 4260..4400 -
1691481024.1202893-CDS-H-paniculata_contig2711:4259..44001691481024.1202893-CDS-H-paniculata_contig2711:4259..4400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2711 4260..4400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2711.7419.1

>prot_H-paniculata_contig2711.7419.1 ID=prot_H-paniculata_contig2711.7419.1|Name=mRNA_H-paniculata_contig2711.7419.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp
MASERKPSIHKPLAVVSNQAKREEARSPDKAARRGAHTGGSIKVPSMDTL
RKHKAYSQKVGGSQGSTLKHPELLAQMLAVIGCLASGVPLKAQENPLMTE
FLQFLGARLPGGSHLNQHVPFILKEEANAIEQDLGNRSYSIIYDGTPELC
ECFGIGIQLMDNDRQVGNMPILLVLCTLEGFRSRTVGGRPTCRRG*
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mRNA from alignment at H-paniculata_contig2711:2692..4402-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2711.7419.1 ID=mRNA_H-paniculata_contig2711.7419.1|Name=mRNA_H-paniculata_contig2711.7419.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1711bp|location=Sequence derived from alignment at H-paniculata_contig2711:2692..4402- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATGGCGTCCGAGCGAAAGCCTAGTATACATAAGCCACTTGCTGTTGTC
AGCAACCAGGCTAAAAGGGAAGAGGCGAGGTCTCCGGACAAAGCAGCCAG
GCGCGGCGCACACACAGGGGGAAGCATCAAGGTGCCCAGTATGGTGAGCC
ATGATCGTGTCCGAGGGTTCTCGCACGAGTCTTTCTTCTCTGAGCATGAC
ACTCTAAGGTGCAAGGCCTGCGACACTGCCGTGTCGAGCAAGCGCTACAC
AATCGTCAACCTCTGCAACGGGACATCGCACAAAGCCAACTTGCTCAAGC
CGGCGAGATCTAGCAACAATCAACAGATGAACACATAAATTCTGTGTTTG
TCGTACTGCTGTACTGCCGTGGTACTATGTACTATACAGTATAGCTTATA
CCTTACAACGTACAGCGGTGCAATGGTGCAATACGTGTGTGTAGCGTGCA
ATGCGCAATGCGCAATCTGATGATGATTTTTGAATGTTTATGTGCTTATG
CTGATGTTACTGCGACACAGCTCTATAGCGGTACCACTACGCAGTTCACT
GTTTGGTAAGTGCTAGGTGCTAGGTGCTAGGTGTAAGATGTACACAACGC
TTGTACTACTTTTAGGTATTACTGTAATACTGTAATACTGCTGTACAAAC
TTGCGCAGAACAGAACACAGGGCAAAGCAAGAAAGTATTTATGGGGAGCT
GTGAGCTATGAGCTATGGTTAGCGTGCACGTTCAAGTGCTGCACGGATTT
GAGATTATTGTATCTTGCCTTCGTTGATGGAGATTGCATGATGAACGATG
CTTTCCTCTGTGCTTTGCTTTCACTGCCGTACAACCTGCACATTGAACAA
CAAAAAATGAACGCACGTTCAGCTTTATGTTAGTGTGCACCGCCATGTAT
ACATGTGTGACACATTAAATGATAGCGTCCCTCCGCACCGGCCATCCGCC
GCCGTTGTCCACTATCATCAGGACACTCTTCGAAAACACAAGGCCTACTC
GCAGAAAGTCGGTGGCTCGCAGGGAAGCACTCTGAAGCACCCTGAGCTGC
TGGCACAAATGTTGGCGGTGATAGGGTGTCTCGCCTCTGGTGTGCCGCTC
AAGGCACAGGAAAATCCTTTGATGACGGAGTTCTTGCAATTCTTGGGCGC
CAGGTTACCTGGAGGAAGCCACCTCAATCAGCACGTGCCGTTCATCCTCA
AGGAAGAGGTGAAAATGTACAAATAAAATGCACGATGAAACTTTGAGAAA
ATCTGGTGCGTTGGTGTGGGTTTTCGTGCATGAAATGATTTACAGAGTTG
GTTCCTGTGGTGATACAGTACCCGCGAACAAACGTTTTTGTCAAACCCCA
TCATGATACGGCGACGCTTCGATATTTCAACGTGCTAAAATATAACTGCT
AACCATGCTGTACTAAACTTTCTGCCGCCGTGCGACCCATTGCCGTCATA
CAGGCCAATGCGATTGAGCAGGATCTCGGCAACCGGAGCTACTCTATTAT
TTATGACGGCACGCCCGAGCTCTGCGAGTGCTTCGGGATCGGCATTCAAT
TAATGGACAATGACCGGCAGGTGGGAAATATGCCGATTCTCCTTGTGCTT
TGTACTCTTGAGGGTTTCAGATCCAGGACGGTCGGTGGACGACCCACTTG
CAGGCGTGGTTAGCGATGAGCTGCATTATCTGATCTCCTCTCAACTGATG
ATGTTCCTTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2711:2692..4402-

>mRNA_H-paniculata_contig2711.7419.1 ID=mRNA_H-paniculata_contig2711.7419.1|Name=mRNA_H-paniculata_contig2711.7419.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig2711:2692..4402- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTCCGAGCGAAAGCCTAGTATACATAAGCCACTTGCTGTTGTCAG
CAACCAGGCTAAAAGGGAAGAGGCGAGGTCTCCGGACAAAGCAGCCAGGC
GCGGCGCACACACAGGGGGAAGCATCAAGGTGCCCAGTATGATGGCGTCC
GAGCGAAAGCCTAGTATACATAAGCCACTTGCTGTTGTCAGCAACCAGGC
TAAAAGGGAAGAGGCGAGGTCTCCGGACAAAGCAGCCAGGCGCGGCGCAC
ACACAGGGGGAAGCATCAAGGTGCCCAGTATGGACACTCTTCGAAAACAC
AAGGCCTACTCGCAGAAAGTCGGTGGCTCGCAGGGAAGCACTCTGAAGCA
CCCTGAGCTGCTGGCACAAATGTTGGCGGTGATAGGGTGTCTCGCCTCTG
GTGTGCCGCTCAAGGCACAGGAAAATCCTTTGATGACGGAGTTCTTGCAA
TTCTTGGGCGCCAGGTTACCTGGAGGAAGCCACCTCAATCAGCACGTGCC
GTTCATCCTCAAGGAAGAGGACACTCTTCGAAAACACAAGGCCTACTCGC
AGAAAGTCGGTGGCTCGCAGGGAAGCACTCTGAAGCACCCTGAGCTGCTG
GCACAAATGTTGGCGGTGATAGGGTGTCTCGCCTCTGGTGTGCCGCTCAA
GGCACAGGAAAATCCTTTGATGACGGAGTTCTTGCAATTCTTGGGCGCCA
GGTTACCTGGAGGAAGCCACCTCAATCAGCACGTGCCGTTCATCCTCAAG
GAAGAGGCCAATGCGATTGAGCAGGATCTCGGCAACCGGAGCTACTCTAT
TATTTATGACGGCACGCCCGAGCTCTGCGAGTGCTTCGGGATCGGCATTC
AATTAATGGACAATGACCGGCAGGTGGGAAATATGCCGATTCTCCTTGTG
CTTTGTACTCTTGAGGGTTTCAGATCCAGGACGGTCGGTGGACGACCCAC
TTGCAGGCGTGGTTAGGCCAATGCGATTGAGCAGGATCTCGGCAACCGGA
GCTACTCTATTATTTATGACGGCACGCCCGAGCTCTGCGAGTGCTTCGGG
ATCGGCATTCAATTAATGGACAATGACCGGCAGGTGGGAAATATGCCGAT
TCTCCTTGTGCTTTGTACTCTTGAGGGTTTCAGATCCAGGACGGTCGGTG
GACGACCCACTTGCAGGCGTGGTTAG
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