mRNA_H-paniculata_contig27093.7415.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27093.7415.1
Unique NamemRNA_H-paniculata_contig27093.7415.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27093.7415.1 vs. uniprot
Match: D8LLA9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA9_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.810e-14
Identity = 48/159 (30.19%), Postives = 89/159 (55.97%), Query Frame = 1 
Query:    1 RSPLLANTSGLFAAIHSCVVIFDSIQGWTKIEEPGIITVYGVPMILTLFVGSYVMRGIRLLVIYEPKLRRRWGCYFREMNIFIG-LIAPTLVFQIVAWAMVPIFGLDRVARVIDSYLVPLEIITILSAAALLARKLGRTEDLFNVSTEILVVGGIALVS 474
            RSP+L   SGL   +     +  ++  +  +    I+ ++ +P+     V +Y++RG+R++V+Y P  R+RWG Y ++    +  L+   ++ ++ AW +V   GL RVA  + + +V ++ +  LSA+  L  +L RT+D+F VS EI   G  AL++
Sbjct:   43 RSPVLMTASGLAGVLAGSTAVSRTVM-FPGLRSLFILRIFSIPLTALCLVVAYILRGLRVIVMYTPSRRQRWGRYLKKEAAMVKVLLTAYVIVEVAAWIVVRHVGLARVASFMVT-VVKIDTVVTLSASLALFGQLRRTQDVFKVSLEIQRAGACALLT 199
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BLAST of mRNA_H-paniculata_contig27093.7415.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 8.550e-14
Identity = 57/162 (35.19%), Postives = 86/162 (53.09%), Query Frame = 1 
Query:    1 RSPLLANTSGLFAAIHSCVVIFDSIQGWTK---IEEPGIITVYGVPMILTLFVGSYVMRGIRLLVIYEPKLRRRWGCYFREMNIFIGLIAPTLVFQIVAWAMVPIFGLDRVARVIDSYLVPLEIIT---ILSAAALLARKLGRTEDLFNVSTEILVVGGIAL 468
            RSPLLA T GL   +   V+IF     W     +   G+ ++   P +L +   + VM  +RLLV++ PKLR +WG + RE ++  GL+   ++ +   W+ V   GL R   V    LV LE+ T    + A  LL  +L + +DL ++ST+I VVG I L
Sbjct:   44 RSPLLACTLGLCITLRFEVLIFAHTLHWGHSGLVASDGVTSLIEFPALL-ISEFALVMSAVRLLVMFFPKLRAKWGRFTRERDLVYGLVCAYILMEGALWSGVAAVGLSRTVGV----LVTLELFTGSTTVVAGVLLGGRLNKVDDLLHMSTDIRVVGTILL 200
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BLAST of mRNA_H-paniculata_contig27093.7415.1 vs. uniprot
Match: A0A6H5KBN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBN3_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.090e-12
Identity = 41/107 (38.32%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    1 RSPLLANTSGLFAAIHSCVVIFDSIQGWTKIEEPGIITVYGVPMILTLFVGSYVMRGIRLLVIYEPKLRRRWGCYFR-EMNIFIGLIAPTLVFQIVAWAMVPIFGLD 318
            RSPLLA TSGL   +     +   I    K+    I  +  VP++   F+G YVMRGIRLLV+Y P  R  WG +F  E+ +   L+    + +++AW+ V +FGL+
Sbjct:   62 RSPLLATTSGLVGVVLGAFAVARLIVIPDKLVVHSISLIIFVPLMELGFLGPYVMRGIRLLVMYNPATRTHWGRFFTSELAVVKILLVAFGIVEVIAWSAVLLFGLE 168
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BLAST of mRNA_H-paniculata_contig27093.7415.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.300e-11
Identity = 51/164 (31.10%), Postives = 86/164 (52.44%), Query Frame = 1 
Query:    1 RSPLLANTSGLFAAIHSCVVIFDSIQGWTKIEEPGIITVYGVPMIL---TLFVGSY--VMRGIRLLVIYEPKLRRRWGCYFREMNIFIGLIAPTLVFQIVAWAMVPIFGLDRVARVIDSYLVPLEII---TILSAAALLARKLGRTEDLFNVSTEILVVGGIAL 468
            RSPLLA T GL   +    ++F     W      G++  +GV  ++    L +  +  VM  +RLLV++ PKLR +WG + RE ++  GL+   ++ +   W+ V   G+ R   V+ +    LE+    T + A  L+  +L + +DL ++ST+I VVG + L
Sbjct:   44 RSPLLACTLGLCITLRFEFLLFAHTLHW---GHSGLVASHGVTNMIEFPVLLISEFALVMSAVRLLVMFFPKLRAKWGRFTREKDLVYGLVCAYILMEGALWSGVAAVGVSRTGGVLAT----LELFSGSTTVVAGVLVGGRLNKVDDLLHMSTDIRVVGMLLL 200
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BLAST of mRNA_H-paniculata_contig27093.7415.1 vs. uniprot
Match: D7FYZ5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ5_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 8.610e-11
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:    1 RSPLLANTSGLFAAIHSCVVIFDSIQGWTKIEEPGIITVYGVPMILTLFVGSYVMRGIRLLVIYEPKLRRRWGCYFREMNIFIGLIAPTLVFQIVAWAMVPIFG 312
            RSP+LA  SG    + S   I      +     P    +  VP++L+ F  +Y++RG+RLL+++ P+ R+RWG + RE N    ++A  LV Q+V W+ VP +G
Sbjct:  107 RSPMLAVMSGAIGILISGPEIIGMTLTYDMSAGPE--KILCVPLMLS-FTATYILRGVRLLIMFTPRSRQRWGSFLRERNFIPIVLAIFLVLQVVVWSFVPTYG 207
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BLAST of mRNA_H-paniculata_contig27093.7415.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.140e-8
Identity = 36/95 (37.89%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:    1 RSPLLANTSGLFA----AIHSCVVIFDSIQGWTKIEEPGIITVYGVPMILTLFVGSYVMRGIRLLVIYEPKLRRRWGCYFREMNIFIGLIAPTLV 273
            RSPLL   SGL      A  +   + +S     ++    IITV   P++L  FVG+Y++RGIRLLV+Y P +R RWG YF +    + ++    V
Sbjct:   51 RSPLLGTVSGLAGVSVWAFATTGAVINSEVVNAQLAFAPIITV---PLVLVAFVGAYIIRGIRLLVMYNPHMRHRWGRYFNKETFMVKVVIVLFV 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27093.7415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LLA9_ECTSI1.810e-1430.19RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KX00_9PHAE8.550e-1435.19RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBN3_9PHAE1.090e-1238.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTR6_ECTSI2.300e-1131.10Developmental regulator FlbA n=1 Tax=Ectocarpus si... [more]
D7FYZ5_ECTSI8.610e-1135.58RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K976_9PHAE1.140e-837.89RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27093contigH-paniculata_contig27093:57..3286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue4.6e-13
Seed eggNOG ortholog2880.D8LLA9
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001740.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size479
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929815.307615-CDS-H-paniculata_contig27093:56..3761622929815.307615-CDS-H-paniculata_contig27093:56..376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27093 57..376 +
1691481023.5581052-CDS-H-paniculata_contig27093:56..3761691481023.5581052-CDS-H-paniculata_contig27093:56..376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27093 57..376 +
1622929815.3249493-CDS-H-paniculata_contig27093:3128..32851622929815.3249493-CDS-H-paniculata_contig27093:3128..3285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27093 3129..3285 +
1691481023.5698164-CDS-H-paniculata_contig27093:3128..32851691481023.5698164-CDS-H-paniculata_contig27093:3128..3285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27093 3129..3285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27093.7415.1prot_H-paniculata_contig27093.7415.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27093 57..3285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27093.7415.1

>prot_H-paniculata_contig27093.7415.1 ID=prot_H-paniculata_contig27093.7415.1|Name=mRNA_H-paniculata_contig27093.7415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
RSPLLANTSGLFAAIHSCVVIFDSIQGWTKIEEPGIITVYGVPMILTLFV
GSYVMRGIRLLVIYEPKLRRRWGCYFREMNIFIGLIAPTLVFQIVAWAMV
PIFGLDRVARVIDSYLVPLEIITILSAAALLARKLGRTEDLFNVSTEILV
VGGIALVSL
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mRNA from alignment at H-paniculata_contig27093:57..3286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27093.7415.1 ID=mRNA_H-paniculata_contig27093.7415.1|Name=mRNA_H-paniculata_contig27093.7415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3230bp|location=Sequence derived from alignment at H-paniculata_contig27093:57..3286+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCACCGCTCTTGGCAAACACCTCAGGCCTTTTCGCGGCGATTCACTC
TTGTGTCGTCATATTCGACTCCATTCAAGGATGGACGAAGATTGAAGAAC
CCGGGATAATAACGGTCTACGGCGTGCCGATGATCCTCACGCTCTTCGTC
GGCAGTTATGTGATGCGCGGCATCCGACTCCTCGTGATATACGAGCCGAA
GTTGCGGAGGCGGTGGGGATGCTATTTCAGGGAAATGAACATATTTATCG
GGTTGATTGCCCCGACCTTGGTATTCCAGATTGTGGCGTGGGCTATGGTG
CCAATATTCGGGTTAGACAGGTGTGTCAGTCAGGGGATCCTTGGATGCGA
GATGAAAGCGAGGGGGGGGAGGAAGATTGTTTTAGTCTGAACGCACAAAC
GTCAAGATAATCAAAAGATCAAAACAACAAGGAATGTAGTATGAAGTATG
AACAATCATTTTTACAAAGTCAAATTTCGAGCGTTTAGTCAGATCACGCG
TTGAGCAGTGTGCTCATGAACTTCATGTTTTCTAATGCCATTTTTTTTCG
GTCTGGCGGTTCATATTGTTACTCCTGGGTAGCTTGGCTGTGTACCCTTA
TTTTTAGAGAAGCTCAGTTAGCACGGGCGTTTAGCTCACGCGAGGTGGTT
TCAGGAAGAACGTGAATTGCCGTCAGGGCACACTTGTCTGAGCTAAGCCT
TACGAATTAGAAGCCCACGCTATGCAGAGATGTTGTACATAGTGACACGG
GAAAAAACACTTGCTTGGCTCTTGATGATATCTGTGCCCACAGCAGCAAT
ACTGTGCAGTAGGGAAGAAAGATGAACTGTGTAACAGTAGCACAAAGATT
GGCCCGGTATTTTAAATCTAACGATATAGCTGGTTCGGCTTCCTGGTTCA
GAACATGGGGTGAGAACCGAACCTGAAGCACTGATTCCCTTTGTAGAGTA
TCGTTGCGTTATTTCCCAGATTGTAATGGGGTTTGTCTGTACACGAGTTT
TGTTACTGTGTGCATGCAACCACTCTCTCGACGCACCGTGGTGGTACCTG
ATAATATTAACGCATATGAGTCTTTGGGACTAAACGACATAGGGAAAAGA
AGGCCCCAAAGCATCTGTGAACAGCCGACGATTGCGACGGCTACATATCG
TTGATAAGTCTTGAGAAATTCAAGGAAATCTGAATTTAAGCCAATTATGT
CATACTCCAGAGCCACGTTTCTTAGAACTACGTACTTCAGTAAAACAGGG
TAGACAAAGTCGTATGTCTTCCATGTATTGTCGTTTTCAAGTTTGTGCCA
ATTTCAGGTTATGATTCGTTGGCTTAGCTCCGAAAACGGTCATGTCTTCT
CGTTTTTCTTTGTGTCTAAATTTTGCGAATGAAGAGGCGAAACTTGAAAC
TTTGCAGATATTTTGTCAGTGGCAAGAGCTAACAAAGCTGTGCTCCTGGT
TAGCACCGGTCACGAAATTGATTATCGAGAAATCCGGGATATACCTGGCC
GTTTGGACTAAACAAACAGTCAAATGGTCATGTTCCAGACACGGATTTCT
CGGGCTCCCCAACAAATAACTGCGACCGATACTACACTGCTCAAGCTTGT
GCGTTTTTGGCGTTTTCCTGTACAACACATGTATAGTTTCTTAGCTTTCA
AGTCGCTAAATTTAGTCCATAAGGTCGCTTCTTATCGTGGAGGTTTTTCA
ACAGAATGTCTCTTGCTGGTCAATTTCGCCCTGAAAAGACCCCTTTGGTG
GATAAGTCATCGAGAGGTTTTACCGGGAAGTGACCCCCGTTTTCGCCAGA
ACCCCTCAAACGGCCGAAGTCGGTGAAAATTCCCCCCACTTTTACCTGTT
ATTTGGGGAGGACAAAATTCCTAAACCGTTATGGTACAGGGCTTGCTGCA
CGCATGCAGAAGGTTCCACGATCATGGTGATACCCAATCACCACACATCA
TCATTCACCCTACCTGTTACACTCAGATCTCTCACACAAAAATGAACGTT
GACTGTTTGATACAGTTGTCAGACATCACATGTTGCCGCCGACACAGCTA
AGCTAGACACATGATGCCGAGGTGGTCGCCGCGGGACTTCAACTTTGCAG
GAGCAGCTGGAGTCCCGATCAGTAGGTAGCCATGGCAACCTTCAGCTACT
GCTGCTGCAAGGCTGTCCCATGCTGCCGCTGTTGTCGTGGATGACGATGG
CTACGATGATTGTGATCCATAATCCATTCCGCCCTTACCTCGAAGTACGC
TTCGCAAAACCGCCCGATTACATACAGCATGTATCTAGTGTTTGATGTGC
AGAACGGCAAGCCTAGGTCAAAACCCACCCGCAACAGCAGTAGGAAACAG
TCGGCGTACCTGGACACCCTAGCGTAGTGGAACATGCATGGCATTTGAAT
ATGTATCTTCGCTTGCTCCACCGTCGATTTATTCCTGATTGGTATGTTTC
TCCAGGTTAGACTGTAACTTGCACACAGATTTTTTTCTCATGCTTTCTTT
TTTTTTCCCGACCAAAAGTAGCGGCGAAGAAATCTCTTCTTTCAAAAACC
TTCCCACGATAAACAGTGGTCCAAGATAGTCGAAAGATGATCCCTGAAAA
AAACTTATTTTGTTATTTTTCGTCCTTGGGTATTTTTCCGCTTAACACTT
ACCAGTTATGACTTATGGGTTGGCATTTCCCCAGTAGGTTCTCGGTAACA
GCGTACCCGATTCCCATATCCTGAGCGGTGATCAATTCCTTGCCACAGGG
GAAGTCGGCGGCTGCCTTGGGTGTGATTGTCCAGCCCAGTCTCGCGGAGA
GTATTCAATCGGAAGGAATCCTGGTGCTCATTTTCTTGATACAGCTACTT
ACCTGTGCAAAATGTCTATTCTATCAGTTTGGTTATCGACTATCATAGAG
CCCCCTTTCATGTAGTTTTAGCCCTTGCTGTCGTGACGGGCCGCTTCTCC
GTGACATCTCTTCTATACATACTCCATGCGTATTTTGGGTTCTCTGTTTA
GTGTACGTGCATTGCGACAACCCCCCGCCCGCGTGCTTGTGCGCAATTCG
TTTTTGCTATGTGGTATCTCAGGGTTGCTCGGGTCATTGATAGCTACCTT
GTTCCTCTGGAGATTATTACGATTTTGAGCGCTGCGGCGCTGCTTGCTCG
CAAGCTGGGGAGAACCGAGGACCTGTTCAATGTTTCGACGGAGATTCTCG
TCGTCGGTGGCATCGCCTTGGTATCTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig27093:57..3286+

>mRNA_H-paniculata_contig27093.7415.1 ID=mRNA_H-paniculata_contig27093.7415.1|Name=mRNA_H-paniculata_contig27093.7415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig27093:57..3286+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCACCGCTCTTGGCAAACACCTCAGGCCTTTTCGCGGCGATTCACTC
TTGTGTCGTCATATTCGACTCCATTCAAGGATGGACGAAGATTGAAGAAC
CCGGGATAATAACGGTCTACGGCGTGCCGATGATCCTCACGCTCTTCGTC
GGCAGTTATGTGATGCGCGGCATCCGACTCCTCGTGATATACGAGCCGAA
GTTGCGGAGGCGGTGGGGATGCTATTTCAGGGAAATGAACATATTTATCG
GGTTGATTGCCCCGACCTTGGTATTCCAGATTGTGGCGTGGGCTATGGTG
CCAATATTCGGGTTAGACAGAGGTCACCGCTCTTGGCAAACACCTCAGGC
CTTTTCGCGGCGATTCACTCTTGTGTCGTCATATTCGACTCCATTCAAGG
ATGGACGAAGATTGAAGAACCCGGGATAATAACGGTCTACGGCGTGCCGA
TGATCCTCACGCTCTTCGTCGGCAGTTATGTGATGCGCGGCATCCGACTC
CTCGTGATATACGAGCCGAAGTTGCGGAGGCGGTGGGGATGCTATTTCAG
GGAAATGAACATATTTATCGGGTTGATTGCCCCGACCTTGGTATTCCAGA
TTGTGGCGTGGGCTATGGTGCCAATATTCGGGTTAGACAGGGTTGCTCGG
GTCATTGATAGCTACCTTGTTCCTCTGGAGATTATTACGATTTTGAGCGC
TGCGGCGCTGCTTGCTCGCAAGCTGGGGAGAACCGAGGACCTGTTCAATG
TTTCGACGGAGATTCTCGTCGTCGGTGGCATCGCCTTGGTATCTTTAGGT
TGCTCGGGTCATTGATAGCTACCTTGTTCCTCTGGAGATTATTACGATTT
TGAGCGCTGCGGCGCTGCTTGCTCGCAAGCTGGGGAGAACCGAGGACCTG
TTCAATGTTTCGACGGAGATTCTCGTCGTCGGTGGCATCGCCTTGGTATC
TTTA
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