mRNA_H-paniculata_contig27073.7408.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27073.7408.1
Unique NamemRNA_H-paniculata_contig27073.7408.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.310e-19
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 3
Query:   69 KVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVGSIHVTHI 311
            +VL TLQ LG+GN FDDI Q+SLMS+  A + FH F K FA+E F E I LPTG      M  YD +G T A+GS  VTHI
Sbjct:    3 QVLTTLQTLGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHI 83          
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5JP98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP98_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.100e-18
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   39 GVGKEVHVELKVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVGSIHVTHI 311
            G  + + VE+KVLA L+ LG+GN FDD+ +++ M E+T    FH F +RFA E F  W+++P    L   MK YD VG T A+GS+  TH+
Sbjct:  123 GTRRCIPVEIKVLAVLRILGRGNYFDDVSEVTGMGEATVNHLFHKFTERFAREFFPVWVRMPNEVELKEIMKTYDEVGMTGAMGSMDGTHL 213          
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.790e-17
Identity = 44/81 (54.32%), Postives = 52/81 (64.20%), Query Frame = 3
Query:   69 KVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVGSIHVTHI 311
            +VL  LQ LG+GN FDDI Q+SLMS+  A + FH F K FA+E F E I LPTG      M  YD +G T A+GS  VTHI
Sbjct:    3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHI 83          
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.140e-17
Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = 3
Query:   54 VHVELKVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVGSIHVTHI 311
            V VELKVLA LQ L +GN F DI  +S +S  T  S FH F K FA E + E++ LPTG+ L   M+ YD +GF  AVGS  VTHI
Sbjct:  169 VPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHI 254          
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.660e-17
Identity = 44/81 (54.32%), Postives = 52/81 (64.20%), Query Frame = 3
Query:   69 KVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVGSIHVTHI 311
            K+L  LQ LG+GN FDDI Q+SLMS+  A + FH F K FA+E F E I LPTG      M  YD +G T A+GS  VTHI
Sbjct:  250 KILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHI 330          
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 6.070e-16
Identity = 47/87 (54.02%), Postives = 55/87 (63.22%), Query Frame = 3
Query:   60 VELKVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDA--LTATMKAYDAVGFTEAVGSIHVTHIA 314
            VE KVLA L  LG+GN F  I Q+S MS  T Q  FH F + FA E + E I LPT ++  L   MK YD +GFT AVGS+ VTHIA
Sbjct:   82 VEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIA 168          
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.690e-15
Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = 3
Query:   54 VHVELKVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVGSIHVTHI 311
            + V+LKVLA LQ L +GN F DI  +S +S  TA + FH F + FA E + E I LPTGD     M  YD +GF+ A GS  VTHI
Sbjct:  153 IPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHI 238          
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.010e-13
Identity = 43/86 (50.00%), Postives = 51/86 (59.30%), Query Frame = 3
Query:   54 VHVELKVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVGSIHVTHI 311
            + +ELKVL      GKGN FDD+ Q+S MSES AQ+ FH F +  A E F E I LPTG  L   M  +  +G T A GS  VTHI
Sbjct:  133 IPLELKVL------GKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHI 212          
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.590e-12
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 3
Query:   54 VHVELKVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVGSIHVTHI 311
            + VELKVL      G+GN FDDI Q+S +SE T Q  FH F +RFA E F + +K P G  L   ++ Y  VGF    GS+  THI
Sbjct:  133 IPVELKVL------GRGNFFDDIPQLSFISEQTIQRVFHEFTQRFALEFFPKHVKFPQGAHLEEILREYKDVGFGGCAGSMDCTHI 212          
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5KTA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA5_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.510e-10
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 3
Query:   69 KVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTG 230
            +VL  LQ LG+GN FDDI Q+SLMS+  A + FH F K FA+E F E I LPTG
Sbjct:    3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTG 56          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5K6N4_9PHAE2.310e-1955.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP98_9PHAE1.100e-1845.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE1.790e-1754.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE2.140e-1753.49Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE2.660e-1754.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE6.070e-1654.02DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE1.690e-1550.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE2.010e-1350.00DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JHC3_9PHAE1.590e-1246.51DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KTA5_9PHAE1.510e-1059.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27073contigH-paniculata_contig27073:1089..2252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size317
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27073.7408.1prot_H-paniculata_contig27073.7408.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27073 2073..2252 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.5347233-UTR-H-paniculata_contig27073:1088..11591622929814.5347233-UTR-H-paniculata_contig27073:1088..1159Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27073 1089..1159 +
1691481023.1939564-UTR-H-paniculata_contig27073:1088..11591691481023.1939564-UTR-H-paniculata_contig27073:1088..1159Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27073 1089..1159 +
1622929814.5473354-UTR-H-paniculata_contig27073:2006..20721622929814.5473354-UTR-H-paniculata_contig27073:2006..2072Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27073 2007..2072 +
1691481023.2041554-UTR-H-paniculata_contig27073:2006..20721691481023.2041554-UTR-H-paniculata_contig27073:2006..2072Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27073 2007..2072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.562939-CDS-H-paniculata_contig27073:2072..22521622929814.562939-CDS-H-paniculata_contig27073:2072..2252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27073 2073..2252 +
1691481023.2151184-CDS-H-paniculata_contig27073:2072..22521691481023.2151184-CDS-H-paniculata_contig27073:2072..2252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27073 2073..2252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27073.7408.1

>prot_H-paniculata_contig27073.7408.1 ID=prot_H-paniculata_contig27073.7408.1|Name=mRNA_H-paniculata_contig27073.7408.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAV
GSIHVTHIA*
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mRNA from alignment at H-paniculata_contig27073:1089..2252+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27073.7408.1 ID=mRNA_H-paniculata_contig27073.7408.1|Name=mRNA_H-paniculata_contig27073.7408.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig27073:1089..2252+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAGAAGGGTGTATGCTCGGCCGCTTTACAGTGAATCGGCGTGGGGAAG GAGGTTCATGTAGAGCTGAAGGTAAGCACACGACACAGGCGATGTCGCAA CTAGCGTTTCGCGCTTGTTGTGCTTAAGCATGCGCCTGAATAGGTGGTGG TTTGTGTTGTACGTGGCAGCCAATTCCCCTCAGTTTACTGTTGCATTGAA ATGATGTCTCTCTCGGTGTGTTCCACCATACCATGCTGCCTCAGTTGTGC TTGACTGTATAGACGGTAAGATCTATGTCTGTCACTGTGCATGACAGAAG TCGTCCTCCAATTTACAGTTCAGTAGAACTGTGATGATGCAAGCTAACTT GTATTGTACATTACTGTAGTTTCTGGCCTCATTCCTGTGCAGTACAACCC GTACTGTCCTCGAAGATATCGTGATATAGGAAGTATGACCCTCTGAAGTT ATAGCACATTGAAAATTATGACGGTGAGTAATAAAAATAACCTTGTTTCA AAAAGGAATTTTCGTTATTTCCCCACCAAAGGCTCCCGAATCAACCAGGG TGCGGGGGATACAAATTGACGCATTCCACCGTCTCGACAACATGCCGTTG GAAAAATTCAAACTGGGCAACATTCAGTTATCAAACAAGGGTACTCGTTC ATAAAACGTCGTATTTATTAGGGACCATTGTAAATACTTTCTTAGGCCCA TTAAAACAGTGCAACCTTGCCTTGCTGAGGGCGATTGGTCTTCGATAAGC CGAGGTGCGTTGTTGCGAGTATTCGTTTTCAGTGAGGCCATCGCGCTGGG AACATGAGCGTCGTCATCCAATTTTCTCCTTGGTAATATTTTGCTATCCC AGCCGCCGTCAGTACGGCCAAGTGCTTAATACGATTCTCTAACCCCTTCC GTCGCGGCGGTAATTCAGGTTCTGGCGACCTTGCAGAATCTGGGGAAAGG GAATAGCTTTGATGATATCGGCCAGATCTCCTTGATGAGCGAGTCGACTG CCCAAAGTGCGTTCCATACATTTGGCAAGCGTTTCGCTGAAGAACGTTTT CATGAGTGGATTAAACTCCCTACCGGGGATGCCCTAACAGCCACAATGAA GGCGTACGACGCGGTGGGCTTCACCGAGGCAGTAGGCTCGATTCATGTCA CCCACATCGCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig27073:1089..2252+

>mRNA_H-paniculata_contig27073.7408.1 ID=mRNA_H-paniculata_contig27073.7408.1|Name=mRNA_H-paniculata_contig27073.7408.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig27073:1089..2252+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGAGTCGACTGCCCAAAGTGCGTTCCATACATTTGGCAAGCGTTT
CGCTGAAGAACGTTTTCATGAGTGGATTAAACTCCCTACCGGGGATGCCC
TAACAGCCACAATGAAGGCGTACGACGCGGTGGGCTTCACCGAGGCAGTA
GGCTCGATTCATGTCACCCACATCGCATGAATGAGCGAGTCGACTGCCCA
AAGTGCGTTCCATACATTTGGCAAGCGTTTCGCTGAAGAACGTTTTCATG
AGTGGATTAAACTCCCTACCGGGGATGCCCTAACAGCCACAATGAAGGCG
TACGACGCGGTGGGCTTCACCGAGGCAGTAGGCTCGATTCATGTCACCCA
CATCGCATGA
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