mRNA_H-paniculata_contig27062.7405.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig27062.7405.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 5.940e-12 Identity = 56/142 (39.44%), Postives = 77/142 (54.23%), Query Frame = 2
Query: 23 KQGWPCDWRTGTADEDRPPSLINRIIRKGMGDCVRGEKMVLPQSWDFAMSFLGGLSGGERRSVPSTLAEDRVPSK--ATPSVRT-----LGMTREDLLDKWRHEIEEKE---LTVPNPESALEGALTIMSGLSSYHGYRTWI 418
K GW CDWR AD + PSL++R++ K G +RG +MVLP+SWD A++ L L G R V L + P + AT + R G+T EDL KW+ ++ E +TV N ++ALEGAL I S Y +I
Sbjct: 388 KGGWACDWRD-MADGNPSPSLLHRLVNKPDGRGLRGTQMVLPRSWDIALTVLEALEHG-RDPVEVVLRKSPDPDRGDATETARGETAMYQGITVEDLSIKWQETVDGLERSGVTVTNAKNALEGALLIREFDGSLIRYEKFI 527
BLAST of mRNA_H-paniculata_contig27062.7405.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 8.590e-12 Identity = 49/141 (34.75%), Postives = 75/141 (53.19%), Query Frame = 2
Query: 29 GWPCDWRTGTADEDRPPSLINRIIRKGMGDCVRGEKMVLPQSWDFAMSFLGGLSGGERRSVPSTLAEDRVPSKATPSVRTL--------GMTREDLLDKWRHE---IEEKELTVPNPESALEGALTIMSGLSSYHGYRTWI 418
GW CDWR G D++ PSL++R++ K G +RG +MV+P+SWD A++ L L G R + ED + + T G+T EDL KW+ + +++TV N ++ALEGAL I S + T++
Sbjct: 534 GWTCDWRDGK-DDNPSPSLLHRLVNKPDGGGLRGAQMVIPRSWDIALTVLEALERG--RDPVEMVVEDLGDADGGDATGTAACKTGLYHGITAEDLRTKWQEAAVGLAGRDITVTNADNALEGALAIREFDGSLVRHETFV 671
BLAST of mRNA_H-paniculata_contig27062.7405.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 1.490e-11 Identity = 47/139 (33.81%), Postives = 74/139 (53.24%), Query Frame = 2
Query: 29 GWPCDWRTGTADEDRPPSLINRIIRKGMGDCVRGEKMVLPQSWDFAMSFLGGLSGGE------RRSVPSTLAEDRVPSKATPSVRTLGMTREDLLDKWRHEIEE---KELTVPNPESALEGALTIMSGLSSYHGYRTWI 418
GW CDWR G +D P L++R++ K G +RG ++VLP+SWD A++ L L G + + D A + G+T EDL+ KW ++E +E+TV + ++ALEGAL+I S + T++
Sbjct: 462 GWVCDWR-GHIGDDSAPGLLHRLVNKPDGGGLRGTQLVLPRSWDIALTVLEALESGRDPVEVVMHKLGNVGRGDAAEMTAANAGGYQGITVEDLIAKWLETVDELARREITVTSAKNALEGALSIREFDGSLVRHETFV 599
BLAST of mRNA_H-paniculata_contig27062.7405.1 vs. uniprot
Match: A0A6H5L846_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L846_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 2.290e-11 Identity = 47/136 (34.56%), Postives = 69/136 (50.74%), Query Frame = 2
Query: 32 WPCDWRTGTADEDRPPSLINRIIRKGMGDCVRGEKMVLPQSWDFAMSFLGGLSGGER------------------RSVPSTLAEDRVPSKATPSVRTLGMTREDLLDKWRHEIEE---KELTVPNPESALEGALTI 376
W CDWR ADE+ P+L++R++ K G +RG +MVLP+SWD A++ L L G + R + T + V G+T E+L KW + E +++ V NPE+ALEGAL+I
Sbjct: 301 WACDWRD-NADENSSPNLLHRLVNKRDGSGLRGAQMVLPRSWDIALTVLEALEHGWQAQHRCQTSQRVDPVEMIVRRLADTDGGEAVELAEAKGDAYHGITMEELKAKWNETVRELAKRDIAVTNPENALEGALSI 435
BLAST of mRNA_H-paniculata_contig27062.7405.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 2.700e-11 Identity = 49/134 (36.57%), Postives = 71/134 (52.99%), Query Frame = 2
Query: 8 GMAGYKQGWPCDWRTGTADEDRPPSLINRIIRKGMGDCVRGEKMVLPQSWDFAMSFLGGLSGGERRSVPSTLAEDRVPSKATPSVRTLG--------MTREDLLDKWRHEIEE---KELTVPNPESALEGALTI 376
G KQGW CDWR D P SL+ R++ K +RG +MVLP+SWD A++FL L G P + + P + + T G +T E+L +W+ ++E + +TV N E+ALEGAL+I
Sbjct: 363 GNHALKQGWACDWRDVEGDMSSP-SLLYRLVNKPDQGGLRGVQMVLPRSWDVALTFLDSLEYGRH---PVEMVMLKSPDSDSGATETAGGTTTVYQGITVEELSARWQGTVDELGRRGITVTNAENALEGALSI 492
BLAST of mRNA_H-paniculata_contig27062.7405.1 vs. uniprot
Match: A0A6H5L0H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H4_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 4.530e-11 Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 2
Query: 32 WPCDWRTGTADEDRP-PSLINRIIRKGMGDCVRGEKMVLPQSWDFAMSFLGGLSGGE---RRSVPSTLAEDRVPSKATPSVRT---LGMTREDLLDKWR---HEIEEKELTVPNPESALEGALTI 376
W CDWR ++D+P PS ++R++ K G +RG +MVLP+SWD A++ L L G + +L DR + T +T G+T E+L KW+ E+E + +TV N ++ALEGAL+I
Sbjct: 53 WACDWRN--VEDDQPSPSFLHRLVNKPDGRGLRGTQMVLPRSWDIALTVLEALEHGRDPVEVVLHKSLDPDRGNATKTAEGKTDVYQGITVEELGTKWQGTVDELERRGITVTNAKNALEGALSI 175
BLAST of mRNA_H-paniculata_contig27062.7405.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 1.720e-10 Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 2
Query: 23 KQGWPCDWRTGTADEDRPPSLINRIIRKGMGDCVRGEKMVLPQSWDFAMSFLGGLSGGER--RSVPSTLAE-DRVPSKATPSVRT---LGMTREDLLDKWRHEI---EEKELTVPNPESALEGALTI 376
++GW CDWR D+ PP L++R++ K G +RG +MVLP+SWD A++ L L G V LAE DR + T + +T G+T E L KW+ + + + V N ++ALEGAL+I
Sbjct: 432 ERGWACDWRD-DRDDMPPPGLVHRLVNKPDGSGLRGTQMVLPRSWDIALTVLEALERGRDPVEVVVEHLAEPDREDATRTAARQTGVYQGITVEALRVKWQEAVVGLARRGVNVTNAKNALEGALSI 557
BLAST of mRNA_H-paniculata_contig27062.7405.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 2.370e-10 Identity = 48/124 (38.71%), Postives = 66/124 (53.23%), Query Frame = 2
Query: 23 KQGWPCDWRTGTADEDRPPSLINRIIRKGMGDCVRGEKMVLPQSWDFAMSFLGGLSGGERRSVPSTLAEDRVPSKATPSVRTL---GMTREDLLDKWRHEIE---EKELTVPNPESALEGALTI 376
K W CDWR E P SLI R++ K +RG +MVLP+SWD A++FL L G L AT + +T G+T E+L KW+ ++ + +TV N E+ALEGAL+I
Sbjct: 539 KSCWACDWRDVGGGEPSP-SLIYRLVNKPDKGGLRGVQMVLPRSWDIALTFLDSLEHGRDPVEMVILKSPDSDRGATETAKTTVYQGITVEELSAKWQETVDGLGRRGITVTNAENALEGALSI 661
BLAST of mRNA_H-paniculata_contig27062.7405.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 6.550e-10 Identity = 50/133 (37.59%), Postives = 70/133 (52.63%), Query Frame = 2
Query: 8 GMAGYKQGWPCDWRTGTADEDRPPSLINRIIRKGMGDCVRGEKMVLPQSWDFAMSFLGGLSGGERRSVPSTLAEDRVPSKATPSVRTLGMTR-------EDLLDKWRHEIEE---KELTVPNPESALEGALTI 376
G KQGW CDWR D+ P SL+ R++ K +RG +MVLP+SWD A++ L L G R V L + S+ P+ +G T E+L WR ++E + + V N E+ALEGAL+I
Sbjct: 314 GSDASKQGWACDWRHVEGDKSSP-SLLYRLVNKPDEGGLRGVQMVLPRSWDIALTVLEALEHG-RDPVEMVLLKSP-DSERRPTETGVGKTNVYQAIKVEELGTNWRETVDELGKRGIVVTNAENALEGALSI 443
BLAST of mRNA_H-paniculata_contig27062.7405.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 1.280e-9 Identity = 50/127 (39.37%), Postives = 69/127 (54.33%), Query Frame = 2
Query: 23 KQGWPCDWRTGTADEDRPPSLINRIIRKGMGDCVRGEKMVLPQSWDFAMSFLGGLSGGER--RSVPSTLA-EDRVPSKATPSVRT---LGMTREDLLDKWRHEIE---EKELTVPNPESALEGALTI 376
K GW CDWR D+ PSL++R++ K G +RG +MVLP+SWD A++ L L G V TLA DR T T G+ EDL KW+ ++ + + V N ++ALEGAL+I
Sbjct: 790 KGGWGCDWRD-HRDDSSSPSLLHRLVNKLDGGGLRGAQMVLPRSWDMALTVLEALELGRDPVEMVLQTLAGADRENLTDTAEANTDVYQGIAVEDLNAKWQATVDGLAKGGIAVTNADNALEGALSI 915 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27062.7405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig27062.7405.1 >prot_H-paniculata_contig27062.7405.1 ID=prot_H-paniculata_contig27062.7405.1|Name=mRNA_H-paniculata_contig27062.7405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp MAGYKQGWPCDWRTGTADEDRPPSLINRIIRKGMGDCVRGEKMVLPQSWDback to top mRNA from alignment at H-paniculata_contig27062:801..3090- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig27062.7405.1 ID=mRNA_H-paniculata_contig27062.7405.1|Name=mRNA_H-paniculata_contig27062.7405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2290bp|location=Sequence derived from alignment at H-paniculata_contig27062:801..3090- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig27062:801..3090- >mRNA_H-paniculata_contig27062.7405.1 ID=mRNA_H-paniculata_contig27062.7405.1|Name=mRNA_H-paniculata_contig27062.7405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig27062:801..3090- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |