mRNA_H-paniculata_contig27026.7396.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27026.7396.1
Unique NamemRNA_H-paniculata_contig27026.7396.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27026.7396.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 9.170e-16
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 CEGCSLGEGLKKSISSKTQSRAEKKLAKVFVDLSGSKNPVSQGGNAYTLMIKNDATRFAWVYFLRPKSDTTM 216
            C GCS+ + +KK I+ +T+SR++KKL +VFVDL G K+  S GG  Y +++K+D TR AW+YFL+ KSD  M
Sbjct:  699 CTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGM 770
[Close]
BLAST of mRNA_H-paniculata_contig27026.7396.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 9.190e-16
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 CEGCSLGEGLKKSISSKTQSRAEKKLAKVFVDLSGSKNPVSQGGNAYTLMIKNDATRFAWVYFLRPKSDTTM 216
            C GCS+ + +KK I+ +T+SR++KKL +VFVDL G K+  S GG  Y +++K+D TR AW+YFL+ KSD  M
Sbjct:  406 CTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGM 477
[Close]
BLAST of mRNA_H-paniculata_contig27026.7396.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.210e-14
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 CEGCSLGEGLKKSISSKTQSRAEKKLAKVFVDLSGSKNPVSQGGNAYTLMIKNDATRFAWVYFLRPKSD 207
            C GCS  +GL K I +KT +RA KKL +VFVDLSG     S GG  YTL++K+D TR+  VYFL+ KSD
Sbjct:    9 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSD 77
[Close]
BLAST of mRNA_H-paniculata_contig27026.7396.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 7.220e-14
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    1 CEGCSLGEGLKKSISSKTQSRAEKKLAKVFVDLSGSKNPVSQGGNAYTLMIKNDATRFAWVYFLRPKSD 207
            C GCS+G+ ++K+I+  T + ++KKL +VFV+L G K   S GG  Y +++K+D TR AW+YFLR KSD
Sbjct:  426 CSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSD 494
[Close]
BLAST of mRNA_H-paniculata_contig27026.7396.1 vs. uniprot
Match: A0A6H5JYF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 9.440e-14
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 CEGCSLGEGLKKSISSKTQSRAEKKLAKVFVDLSGSKNPVSQGGNAYTLMIKNDATRFAWVYFLRPKSD 207
            C GCS  +GL K I +KT +RA KKL +VFVDLSG     S GG  YTL++K+D TR+  VYFL+ KSD
Sbjct:  143 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSD 211
[Close]
BLAST of mRNA_H-paniculata_contig27026.7396.1 vs. uniprot
Match: A0A6H5JF07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF07_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.750e-13
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 CEGCSLGEGLKKSISSKTQSRAEKKLAKVFVDLSGSKNPVSQGGNAYTLMIKNDATRFAWVYFLRPKSD 207
            C GCS  +GL K I +KT +RA KKL +VFVDLSG     S GG  YTL++K+D TR+  VYFL+ KSD
Sbjct:  348 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSD 416
[Close]
BLAST of mRNA_H-paniculata_contig27026.7396.1 vs. uniprot
Match: A0A6H5L158_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L158_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.790e-13
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 CEGCSLGEGLKKSISSKTQSRAEKKLAKVFVDLSGSKNPVSQGGNAYTLMIKNDATRFAWVYFLRPKSD 207
            C GCS  +GL K I +KT +RA KKL +VFVDLSG     S GG  YTL++K+D TR+  VYFL+ KSD
Sbjct:  190 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSD 258
[Close]
BLAST of mRNA_H-paniculata_contig27026.7396.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.820e-13
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 CEGCSLGEGLKKSISSKTQSRAEKKLAKVFVDLSGSKNPVSQGGNAYTLMIKNDATRFAWVYFLRPKSD 207
            C GCS  +GL K I +KT +RA KKL +VFVDLSG     S GG  YTL++K+D TR+  VYFL+ KSD
Sbjct:   40 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSD 108
[Close]
BLAST of mRNA_H-paniculata_contig27026.7396.1 vs. uniprot
Match: A0A6H5L8P7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.830e-13
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 CEGCSLGEGLKKSISSKTQSRAEKKLAKVFVDLSGSKNPVSQGGNAYTLMIKNDATRFAWVYFLRPKSD 207
            C GCS  +GL K I +KT +RA KKL +VFVDLSG     S GG  YTL++K+D TR+  VYFL+ KSD
Sbjct:  362 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSD 430
[Close]
BLAST of mRNA_H-paniculata_contig27026.7396.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.840e-13
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 CEGCSLGEGLKKSISSKTQSRAEKKLAKVFVDLSGSKNPVSQGGNAYTLMIKNDATRFAWVYFLRPKSD 207
            C GCS  +GL K I +KT +RA KKL +VFVDLSG     S GG  YTL++K+D TR+  VYFL+ KSD
Sbjct:  349 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSD 417
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27026.7396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBA7_9PHAE9.170e-1651.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE9.190e-1651.39Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7U9_9PHAE4.210e-1456.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JH25_9PHAE7.220e-1449.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYF9_9PHAE9.440e-1456.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JF07_9PHAE1.750e-1356.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L158_9PHAE1.790e-1356.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGN1_9PHAE1.820e-1356.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L8P7_9PHAE1.830e-1356.52Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L060_9PHAE1.840e-1356.52Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27026contigH-paniculata_contig27026:341..577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929813.2619448-CDS-H-paniculata_contig27026:340..5771622929813.2619448-CDS-H-paniculata_contig27026:340..577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27026 341..577 -
1691481022.631496-CDS-H-paniculata_contig27026:340..5771691481022.631496-CDS-H-paniculata_contig27026:340..577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27026 341..577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27026.7396.1prot_H-paniculata_contig27026.7396.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27026 341..577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27026.7396.1

>prot_H-paniculata_contig27026.7396.1 ID=prot_H-paniculata_contig27026.7396.1|Name=mRNA_H-paniculata_contig27026.7396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
CEGCSLGEGLKKSISSKTQSRAEKKLAKVFVDLSGSKNPVSQGGNAYTLM
IKNDATRFAWVYFLRPKSDTTMPHTTSL*
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mRNA from alignment at H-paniculata_contig27026:341..577-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27026.7396.1 ID=mRNA_H-paniculata_contig27026.7396.1|Name=mRNA_H-paniculata_contig27026.7396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at H-paniculata_contig27026:341..577- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGAAGGGTGTTCACTAGGAGAAGGACTCAAGAAAAGTATTTCCTCTAA
GACGCAAAGTAGAGCAGAGAAGAAACTAGCCAAAGTGTTCGTTGATTTAA
GTGGATCTAAAAATCCAGTTTCTCAGGGAGGCAATGCTTACACACTCATG
ATCAAGAACGACGCAACACGATTCGCGTGGGTATACTTCTTAAGACCAAA
GTCAGATACAACCATGCCTCACACAACTTCTCTCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig27026:341..577-

>mRNA_H-paniculata_contig27026.7396.1 ID=mRNA_H-paniculata_contig27026.7396.1|Name=mRNA_H-paniculata_contig27026.7396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig27026:341..577- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGAAGGGTGTTCACTAGGAGAAGGACTCAAGAAAAGTATTTCCTCTAA
GACGCAAAGTAGAGCAGAGAAGAAACTAGCCAAAGTGTTCGTTGATTTAA
GTGGATCTAAAAATCCAGTTTCTCAGGGAGGCAATGCTTACACACTCATG
ATCAAGAACGACGCAACACGATTCGCGTGGGTATACTTCTTAAGACCAAA
GTCAGATACAACCATGCCTCACACAACTTCTCTCTGATGTGAAGGGTGTT
CACTAGGAGAAGGACTCAAGAAAAGTATTTCCTCTAAGACGCAAAGTAGA
GCAGAGAAGAAACTAGCCAAAGTGTTCGTTGATTTAAGTGGATCTAAAAA
TCCAGTTTCTCAGGGAGGCAATGCTTACACACTCATGATCAAGAACGACG
CAACACGATTCGCGTGGGTATACTTCTTAAGACCAAAGTCAGATACAACC
ATGCCTCACACAACTTCTCTCTGA
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