mRNA_H-paniculata_contig2702.7394.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2702.7394.1
Unique NamemRNA_H-paniculata_contig2702.7394.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2702.7394.1 vs. uniprot
Match: D8LE67_ECTSI (Protein MAK16 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE67_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 1.220e-126
Identity = 251/350 (71.71%), Postives = 269/350 (76.86%), Query Frame = 1 
Query:    1 SDDIIWQVVNYQFCSFKSKIAKEQT---NEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYTKALEMVSQELEYFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKQREKKALVAAKLERAIEGELLERLKKGTYGDIYNFPEVQYDKVLEKAENDYADANPEEMEXXXXXXXXXXXXYVXXXXXXXXXIEEAGEWGGSYWGAQGTEGGDEDXXXXXXXXXXXXXXXXXXSEAPQGGIDSKGKRKAKPVDSSRHTSSSRTDGDAKRRKGASGATT--KPKKARRSKPSHPYVEVEYEEETEGATTESMSFNW 1035
            SDD+IWQVVNYQFCSFKSKIAKEQT   NEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNY KALE VS+ELE+FPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREK REKKALVAAKLER+IEGELLERLKKGTYGDIYNFPEVQYDK L +AE++YA+ NPE ME  XXXXXXXXXX  XXXXXXX  IE+  EWGGSYWGA G+ GG +       XXXXXXXXXXXX                                  KRR+GA+G  T  K K+  ++KPSHPYV            +ESMS+NW
Sbjct:    3 SDDVIWQVVNYQFCSFKSKIAKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKMREKKALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKALMEAEDEYAEQNPEAMEEEXXXXXXXXXXXXXXXXXXXD-IEDTAEWGGSYWGAPGSAGGPQAARGGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXKRRRGATGGATTKKAKRQPKAKPSHPYVXXXXXXXXXXXXSESMSYNW 347
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BLAST of mRNA_H-paniculata_contig2702.7394.1 vs. uniprot
Match: A0A835ZFG7_9STRA (Protein MAK16 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFG7_9STRA)

HSP 1 Score: 310 bits (793), Expect = 3.990e-99
Identity = 201/348 (57.76%), Postives = 237/348 (68.10%), Query Frame = 1 
Query:    4 DDIIWQVVNYQFCSFKSKIAKEQT---NEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYTKALEMVSQELEYFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKQREKKALVAAKLERAIEGELLERLKKGTYGDIYNFPEVQYDKVLEKAENDYADANPEEMEXXXXXXXXXXXXYVXXXXXXXXXIEEAGEWGGSYWGAQGTEGGDEDXXXXXXXXXXXXXXXXXXSEAPQGGIDSKGKRKAKPVDSSRHTSSSRTDGDAKRRKGASGATTKPKKARRSKPSHPYVEVEYEEETEGATTES-MSFNW 1035
            D++IW V+N+QFC+FK+KIAKEQT   N YN TGLCN+ SCPLANSRYATI+EHDGVCYLY+K+IERAH+PKNLWEKIKL RNYT+ALE+VS++L+YFPK+LQH++KQRLTKIHQYLIRMRKLKLKA+PKLV IN KVE+RE +       AA L+R+IE ELLERLK+GTYGDIYNFPEVQY K L++AE +++        XXXXXXXXXX  YV         +E+ G WG SYWGA+G      D          XXXXXXXX                                  KR KGA+GA        + +P  PYVEVEYEEE EG  TES MSFNW
Sbjct:    4 DEVIWSVINHQFCAFKAKIAKEQTFCRNPYNATGLCNRGSCPLANSRYATIKEHDGVCYLYMKSIERAHSPKNLWEKIKLPRNYTQALEIVSEQLQYFPKYLQHKNKQRLTKIHQYLIRMRKLKLKARPKLVAINKKVERREAKXXXXXEKAADLDRSIETELLERLKRGTYGDIYNFPEVQYGKALQQAEEEFSGEEEXXXXXXXXXXXXXXVEYVEGDEEEESDMED-GAWGSSYWGAEGGSDAGSDGETVDASDEEXXXXXXXXXXXXXXXXXX-------------------XXXXXKRVKGAAGAKKAVGGQGKKRPG-PYVEVEYEEEMEGGATESSMSFNW 330
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BLAST of mRNA_H-paniculata_contig2702.7394.1 vs. uniprot
Match: A0A3F2RF83_9STRA (Protein MAK16 homolog n=6 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RF83_9STRA)

HSP 1 Score: 267 bits (683), Expect = 7.570e-83
Identity = 132/189 (69.84%), Postives = 163/189 (86.24%), Query Frame = 1 
Query:    4 DDIIWQVVNYQFCSFKSKIAKEQ----TNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYTKALEMVSQELEYFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKQREKKALVAAKLERAIEGELLERLKKGTYGDIYNFPEVQYDKVLE 558
            D++IW V++ QFCSFKSK+        +N YNVTGLCN+S+CPLANSRYATIREHDGVCYLY+KTIERAHTP  LWE++KLS+NYTK+L  + ++L+++PK L H++KQRLTKIHQYL+RMRKL LK KPKLV IN K+E+REK+REKKA+VAAKL+ +IE ELLERL+KGTYGDIYNFPE ++ KVLE
Sbjct:    4 DEVIWGVISKQFCSFKSKLPGTGNMFCSNPYNVTGLCNRSACPLANSRYATIREHDGVCYLYMKTIERAHTPNRLWERVKLSKNYTKSLAQIDEQLQFWPKKLIHKNKQRLTKIHQYLMRMRKLTLKTKPKLVVINKKIERREKRREKKAMVAAKLDNSIEKELLERLQKGTYGDIYNFPESEFSKVLE 192
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BLAST of mRNA_H-paniculata_contig2702.7394.1 vs. uniprot
Match: A0A4D9D3B1_9STRA (Protein MAK16 homolog n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3B1_9STRA)

HSP 1 Score: 265 bits (677), Expect = 1.020e-81
Identity = 141/191 (73.82%), Postives = 163/191 (85.34%), Query Frame = 1 
Query:    4 DDIIWQVVNYQFCSFKSKI-AKEQT---NEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYTKALEMVSQELEYFPKHLQHRSKQRLTKIHQYLIRMRKLKLKA-KPKLVTINPKVEKREKQREKKALVAAKLERAIEGELLERLKKGTYGDIYNFPEVQYDKVLEK 561
            D+IIWQ++N+QFCSFKSK+ AKE T   N YNVTGLC +S+CPLANSRYATIRE +G CYL +KT ERAHTP  LWEKI+L  NY KALE VS+ELEYFPK+LQHR+KQRLTKIHQYLIRMRKLKLKA KPKLV I+ KV++REK+RE KAL AAKLE+ IE ELL RL++GTYGDIYNFPE  Y KVL++
Sbjct:    5 DEIIWQIINHQFCSFKSKLNAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEELEYFPKYLQHRNKQRLTKIHQYLIRMRKLKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDE 195
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BLAST of mRNA_H-paniculata_contig2702.7394.1 vs. uniprot
Match: A0A067C7V2_SAPPC (Protein MAK16 homolog n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C7V2_SAPPC)

HSP 1 Score: 263 bits (672), Expect = 1.950e-81
Identity = 134/204 (65.69%), Postives = 168/204 (82.35%), Query Frame = 1 
Query:    4 DDIIWQVVNYQFCSFKSKIAKEQT---NEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYTKALEMVSQELEYFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKQREKKALVAAKLERAIEGELLERLKKGTYGDIYNFPEVQYDKVLEKAENDYADANPE-EME 603
            D++IW V++ QFCSFKSK+ +      NEYNVTGLCN+ SCPLANSRYATIREH+GVCYLY+KTIERAH+PKNLWEK+KLS+NYTK+LE +  +++++PK L HR+KQRLTKIHQYL+RMRKL+LK KP LV IN K+E+RE +RE+KA  AAKL+ +IE ELL+RL+KGTYGDIYNFPE ++ KVL+  E +      E EME
Sbjct:    4 DEVIWGVISNQFCSFKSKLREGAMFCRNEYNVTGLCNRQSCPLANSRYATIREHNGVCYLYMKTIERAHSPKNLWEKVKLSKNYTKSLEQIDAQMQFWPKKLIHRNKQRLTKIHQYLMRMRKLRLKTKPNLVVINKKIERREARREEKAKTAAKLDSSIEKELLQRLQKGTYGDIYNFPEREFAKVLDDNEEEXXXGEDEYEME 207
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BLAST of mRNA_H-paniculata_contig2702.7394.1 vs. uniprot
Match: W7TVF8_9STRA (Protein MAK16 homolog n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVF8_9STRA)

HSP 1 Score: 262 bits (669), Expect = 1.380e-80
Identity = 140/191 (73.30%), Postives = 162/191 (84.82%), Query Frame = 1 
Query:    4 DDIIWQVVNYQFCSFKSKI-AKEQT---NEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYTKALEMVSQELEYFPKHLQHRSKQRLTKIHQYLIRMRKLKLKA-KPKLVTINPKVEKREKQREKKALVAAKLERAIEGELLERLKKGTYGDIYNFPEVQYDKVLEK 561
            D+IIWQ++N+QFCSFKSKI AKE T   N YNVTGLC +S+CPLANSRYATIRE +G CYL +KT ERAHTP  LWEKI+L  NY KALE VS+ LEYFPK+LQHR+KQRLTKIHQYLIRMR+LKLKA KPKLV I+ KV++REK+RE KAL AAKLE+ IE ELL RL++GTYGDIYNFPE  Y KVL++
Sbjct:    5 DEIIWQIINHQFCSFKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDE 195
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BLAST of mRNA_H-paniculata_contig2702.7394.1 vs. uniprot
Match: A0A1V9YTR0_9STRA (Protein MAK16 homolog n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YTR0_9STRA)

HSP 1 Score: 260 bits (664), Expect = 4.370e-80
Identity = 128/191 (67.02%), Postives = 163/191 (85.34%), Query Frame = 1 
Query:    4 DDIIWQVVNYQFCSFKSKIAKEQT---NEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYTKALEMVSQELEYFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKQREKKALVAAKLERAIEGELLERLKKGTYGDIYNFPEVQYDKVLEKAE 567
            D++IW V++ QFCSFKSK+ +      NEYNVTGLCN+ SCPLANSRYATIREH+GVCYLY+KTIERAH+PKNLWEK+KLS+NYTK+L  + ++++++PK + HR+KQRLTKIHQYL+RMRKL+LK KP LV IN K+E+RE +RE+KA  AAKL+ +IE ELL RL+KGTYGDIYNFPE ++ KVL++ E
Sbjct:    4 DEVIWGVISNQFCSFKSKLREGAMFCRNEYNVTGLCNRQSCPLANSRYATIREHNGVCYLYMKTIERAHSPKNLWEKVKLSKNYTKSLAQIDEQMQFWPKKMIHRNKQRLTKIHQYLMRMRKLRLKTKPNLVVINKKIERREARREEKAKTAAKLDSSIEKELLARLQKGTYGDIYNFPEKEFVKVLDENE 194
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BLAST of mRNA_H-paniculata_contig2702.7394.1 vs. uniprot
Match: H3HCF7_PHYRM (Protein MAK16 homolog n=14 Tax=Phytophthora TaxID=4783 RepID=H3HCF7_PHYRM)

HSP 1 Score: 259 bits (662), Expect = 5.950e-80
Identity = 129/188 (68.62%), Postives = 160/188 (85.11%), Query Frame = 1 
Query:    4 DDIIWQVVNYQFCSFKSKIAKEQ----TNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYTKALEMVSQELEYFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKQREKKALVAAKLERAIEGELLERLKKGTYGDIYNFPEVQYDKVL 555
            D++IW V++ QFCSFKSK+        +N YNVTGLCN+SSCPLANSRYATIRE DGVC+L++KTIERAHTP  LWE++KLS+NYTKAL  + ++L+++PK L H++KQRLTKIHQYL+RMRKL LK KPKLV IN K+E+REK+REKKA+VAAKL+ +IE ELLERL+KGTYGDIYNFPE ++  VL
Sbjct:    4 DEVIWGVISKQFCSFKSKLPGTGNMFCSNAYNVTGLCNRSSCPLANSRYATIREEDGVCFLFMKTIERAHTPNRLWERVKLSKNYTKALAQLDEQLQFWPKKLVHKNKQRLTKIHQYLMRMRKLTLKTKPKLVVINKKIERREKRREKKAMVAAKLDNSIEKELLERLQKGTYGDIYNFPEREFSSVL 191
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BLAST of mRNA_H-paniculata_contig2702.7394.1 vs. uniprot
Match: A0A484EAC2_BRELC (Protein MAK16 homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EAC2_BRELC)

HSP 1 Score: 259 bits (662), Expect = 9.280e-80
Identity = 129/188 (68.62%), Postives = 162/188 (86.17%), Query Frame = 1 
Query:    4 DDIIWQVVNYQFCSFKSKI----AKEQTNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYTKALEMVSQELEYFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKQREKKALVAAKLERAIEGELLERLKKGTYGDIYNFPEVQYDKVL 555
            D++IW V++ QFCSFKSK+    A   +N YNVTGLC++S+CPLANSRYATIRE DGVCYLY+KTIERAHTP  LWE++KLSRNYTK+L  + ++L+++PK L +++KQRLTKIHQYL+RMRKL LK KPKLV IN K+++REK+REKKA+VAAKL+ +IE ELLERL+KGTYGDIYNFPE ++ KVL
Sbjct:    4 DEVIWGVISKQFCSFKSKLPGTGAMFCSNPYNVTGLCHRSACPLANSRYATIREEDGVCYLYMKTIERAHTPNRLWERVKLSRNYTKSLAQIDEQLQFWPKKLIYKNKQRLTKIHQYLMRMRKLTLKTKPKLVVINKKIDRREKRREKKAMVAAKLDNSIEKELLERLQKGTYGDIYNFPEREFSKVL 191
[Close]
BLAST of mRNA_H-paniculata_contig2702.7394.1 vs. uniprot
Match: M4BKL5_HYAAE (Protein MAK16 homolog n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BKL5_HYAAE)

HSP 1 Score: 259 bits (661), Expect = 1.400e-79
Identity = 128/189 (67.72%), Postives = 161/189 (85.19%), Query Frame = 1 
Query:    4 DDIIWQVVNYQFCSFKSKIAKEQ----TNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYTKALEMVSQELEYFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVEKREKQREKKALVAAKLERAIEGELLERLKKGTYGDIYNFPEVQYDKVLE 558
            D++IW V++ QFCSFKSK+        +N YNVTGLCN+++CPLANSRYATIRE +GVC+LY+KTIERAHTP  LWE++KLSRNYTK+L  + ++L+++PK L H++KQRLTKIHQYL+RMRKL LK KPKLV  N K+E+REK+REKKA+VAAKL+ +IE ELLERL+KGTYGDIYNFPE ++ KVLE
Sbjct:    4 DEVIWGVISKQFCSFKSKLPGTGNMFCSNPYNVTGLCNRTACPLANSRYATIREENGVCFLYMKTIERAHTPNRLWERVKLSRNYTKSLAQIDEQLQFWPKKLVHKNKQRLTKIHQYLMRMRKLTLKTKPKLVVTNKKIERREKRREKKAMVAAKLDNSIEKELLERLQKGTYGDIYNFPEREFSKVLE 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2702.7394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE67_ECTSI1.220e-12671.71Protein MAK16 homolog n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835ZFG7_9STRA3.990e-9957.76Protein MAK16 homolog n=1 Tax=Tribonema minus TaxI... [more]
A0A3F2RF83_9STRA7.570e-8369.84Protein MAK16 homolog n=6 Tax=Phytophthora TaxID=4... [more]
A0A4D9D3B1_9STRA1.020e-8173.82Protein MAK16 homolog n=1 Tax=Nannochloropsis sali... [more]
A0A067C7V2_SAPPC1.950e-8165.69Protein MAK16 homolog n=4 Tax=Saprolegniaceae TaxI... [more]
W7TVF8_9STRA1.380e-8073.30Protein MAK16 homolog n=1 Tax=Nannochloropsis gadi... [more]
A0A1V9YTR0_9STRA4.370e-8067.02Protein MAK16 homolog n=1 Tax=Thraustotheca clavat... [more]
H3HCF7_PHYRM5.950e-8068.62Protein MAK16 homolog n=14 Tax=Phytophthora TaxID=... [more]
A0A484EAC2_BRELC9.280e-8068.62Protein MAK16 homolog n=1 Tax=Bremia lactucae TaxI... [more]
M4BKL5_HYAAE1.400e-7967.72Protein MAK16 homolog n=2 Tax=Hyaloperonospora ara... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2702contigH-paniculata_contig2702:14490..20187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score217.2
Seed ortholog evalue8.8e-54
Seed eggNOG ortholog2880.D8LE67
Preferred nameMAK16
KEGG rclassRC00020,RC02814,RC02821
KEGG koko:K01738,ko:K14831,ko:K19984
KEGG ReactionR00897,R03601,R04859
KEGG Pathwayko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00021
Hectar predicted targeting categoryother localisation
GOsGO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.maturation of LSU-rRNA
EggNOG OGsCOG5129@1,KOG3064@2759
Ec32 ortholog descriptionMak16 protein
Ec32 orthologEc-00_001130.1
EC2.5.1.47
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko04131
Exons7
Model size1424
Cds size777
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929812.7921846-UTR-H-paniculata_contig2702:14489..145631622929812.7921846-UTR-H-paniculata_contig2702:14489..14563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2702 14490..14563 +
1691481022.382308-UTR-H-paniculata_contig2702:14489..145631691481022.382308-UTR-H-paniculata_contig2702:14489..14563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2702 14490..14563 +
1622929812.8133993-UTR-H-paniculata_contig2702:15721..158781622929812.8133993-UTR-H-paniculata_contig2702:15721..15878Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2702 15722..15878 +
1691481022.3941047-UTR-H-paniculata_contig2702:15721..158781691481022.3941047-UTR-H-paniculata_contig2702:15721..15878Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2702 15722..15878 +
1622929812.8363812-UTR-H-paniculata_contig2702:16528..165581622929812.8363812-UTR-H-paniculata_contig2702:16528..16558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2702 16529..16558 +
1691481022.404502-UTR-H-paniculata_contig2702:16528..165581691481022.404502-UTR-H-paniculata_contig2702:16528..16558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2702 16529..16558 +
1622929812.9337552-UTR-H-paniculata_contig2702:19801..201871622929812.9337552-UTR-H-paniculata_contig2702:19801..20187Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2702 19802..20187 +
1691481022.4621315-UTR-H-paniculata_contig2702:19801..201871691481022.4621315-UTR-H-paniculata_contig2702:19801..20187Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2702 19802..20187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929812.8542128-CDS-H-paniculata_contig2702:16558..167021622929812.8542128-CDS-H-paniculata_contig2702:16558..16702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2702 16559..16702 +
1691481022.4135218-CDS-H-paniculata_contig2702:16558..167021691481022.4135218-CDS-H-paniculata_contig2702:16558..16702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2702 16559..16702 +
1622929812.867629-CDS-H-paniculata_contig2702:17546..176901622929812.867629-CDS-H-paniculata_contig2702:17546..17690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2702 17547..17690 +
1691481022.422453-CDS-H-paniculata_contig2702:17546..176901691481022.422453-CDS-H-paniculata_contig2702:17546..17690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2702 17547..17690 +
1622929812.8821416-CDS-H-paniculata_contig2702:18295..183791622929812.8821416-CDS-H-paniculata_contig2702:18295..18379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2702 18296..18379 +
1691481022.4314787-CDS-H-paniculata_contig2702:18295..183791691481022.4314787-CDS-H-paniculata_contig2702:18295..18379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2702 18296..18379 +
1622929812.8940597-CDS-H-paniculata_contig2702:18643..187881622929812.8940597-CDS-H-paniculata_contig2702:18643..18788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2702 18644..18788 +
1691481022.4417295-CDS-H-paniculata_contig2702:18643..187881691481022.4417295-CDS-H-paniculata_contig2702:18643..18788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2702 18644..18788 +
1622929812.9120188-CDS-H-paniculata_contig2702:19541..198011622929812.9120188-CDS-H-paniculata_contig2702:19541..19801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2702 19542..19801 +
1691481022.4527578-CDS-H-paniculata_contig2702:19541..198011691481022.4527578-CDS-H-paniculata_contig2702:19541..19801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2702 19542..19801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2702.7394.1prot_H-paniculata_contig2702.7394.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2702 16559..19801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2702.7394.1

>prot_H-paniculata_contig2702.7394.1 ID=prot_H-paniculata_contig2702.7394.1|Name=mRNA_H-paniculata_contig2702.7394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=259bp
MVSQELEYFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKPKLVTINPKVE
KREKQREKKALVAAKLERAIEGELLERLKKGTYGDIYNFPEVQYDKVLEK
AENDYADANPEEMEEEDEEENEGEVEYVEDLEEDESDIEEAGEWGGSYWG
AQGTEGGDEDEDGEGDSDGEGNDDEESDSEAPQGGIDSKGKRKAKPVDSS
RHTSSSRTDGDAKRRKGASGATTKPKKARRSKPSHPYVEVEYEEETEGAT
TESMSFNW*
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mRNA from alignment at H-paniculata_contig2702:14490..20187+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2702.7394.1 ID=mRNA_H-paniculata_contig2702.7394.1|Name=mRNA_H-paniculata_contig2702.7394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5698bp|location=Sequence derived from alignment at H-paniculata_contig2702:14490..20187+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGATGATATCATATGGCAGGTGGTGAACTACCAGTTCTGCTCGTTCAA
GAGCAAAATCGCCAAGGAGCAAACGTTCTGCAGGCGAGTATGATCTACGA
ATCGCTCTTGATGCGTCGTACGTATTTTCTGGTTCCGGATTACGGAAGCG
CGCAGGCAATATTCCTACATATTATCTCGAGTTCGTTGTGCACCTGGGAA
AAAAACGTTTGAACGGCATGTCTGGGGTGACATTTGGCACATCCGGTTTC
ACCAGTTTAAACTCAAACGCTTGATCCTTTTTGCCTGGAACACCGAAAAC
CGGCCGGTGGACAGGAAGTGCCTCCCTGAATTAGATAATAAACAAGCCTT
ATTTTAGCCGAATCTAACGTACTTAGACCGACTTTGTCCCCATTTTTTCC
TTCATATTTTGCGTCCCGGCTATCCAGTTGACTCATTTTTTTTTCTCTTC
ATTTTAGGTTATGTTGCCTGCTGTGACTCGTTTTTGTAGCGGCAAAAACT
TCATGGCGTACACGTCGCAGCCCGCAGTAATATATAGTATCATTAACGAC
TTTGTCGTTTGTCCGAAGTGGCTCGGTTCACCAGTGATCCCCGTTTTTGG
TAATACCCGTCATATCTCACCGATCTAAACCGTCGGTTGTTGCCATAACT
TCGAAAATAATAGCACCTCCTCATTTTTTTTTTCTTATTTTGGAGCCAGC
TATGACCTCTAGCACTATCCTTGTGAGATGGTCCCAATGCCTTCTACGCT
GCTAGAAAGTACTCCCCCTGATTCTGCCTCTTGCAGAGCTGAGTACGTTT
GCAGGCAGCCTTCAAAAATCTTTGAACAGACAACAGCATATCATGCATGC
GTTGAGATTGTGAGTCCTTAGCAAGGTAAGTGCGATGTCTAACACCAGGG
AGTGAGAAATAACGTCGCAACCGCAGGCGGATGACATTACCTCTTCTTGC
CTTCTTGCCGTGGTGCTGGGCGGTCTTGTTGTGAATCAGGAAGTGCAGAC
GCGCCTCGCCCGTTGTGTACAGATGCACTCAGGGCCAATACTAGAAACGT
GATACTAGGGGAATATTTTCCACTGTCCCATAGTTGTGTCGTCAACCAGG
GCATTATTTCCCACGTCGGTGATCTAATGCGTATATATGTGTAGCTCTGG
CTCGATATCTACCTTTCTCAACAGACGTTTTGAATCATACGCACGTTCAA
TGCCCGAATCTCACGTTCTCCCGGCGAAACAGAAACGAATACAATGTGAC
AGGGCTCTGCAACAAGAGCTCGTGCCCATTGGCCAACTCTCGATATGCCA
CCATTCGCGAGCACGATGGAGTGTGTTACCTGTACATCAAGACCATCGAG
CGCGCCCACACACCCAAAAATTTGTGGGAGAAAATCAAGGTGTGACTATC
ACGATATTAGTCAGGATTAAGTTGTAAGCGAGCATTCGGTGACTGAGATA
CCATTTTCCAGTTTGGGGGTATCGAGCCGTGCTTCTGGGGACCCACACAG
GACCGCCGGCAATATTTACTGGCTTAACTGTGCCCACGTACCCACGTTAC
GTATAGGAAGACATCGGGCCATAAGCAGCTGTCTGCATACATGATTTGCC
TATTTTCGAAATCACCAACCTTGACCAGCTACCATCGCGTGTACAGACTT
GCCATTAAACCGATGTAGTGAATCCTCGATTTGAGCCACTGCTGCTGCCC
ATTATTTATCGAAAAGTGCCACCTGAAGAATCTATGTGGTGCTGTAGCGC
CGTAGTATAAGCGGCGGTTTGTCGTTGGGTTACCGTGTATCCCGAGATAT
ACTTCACAACTGTAGAGTTGTAATGGTTTGAACGTTGTACCTATCTGAAC
TGGGAGCTCAGCAGGTCTAAAGGCTAGTGTAGACCGCCCTCGGAATCAGC
AAGCTTGGCGTTGATTTTACCGTGTTGTACTGTGGAGCACAGGTTGCCTA
ATAACACCATGCACTTTTCACTCATGACCTTGTTACGCTGTCGTGTGCGC
CATTCGCCACCGCCACTCATGGGCATGCCGCGAGAGCAGCTGTCGCGTAA
CTACACCAAGGCGTTAGAGATGGTATCTCAGGAGCTGGAGTACTTCCCGA
AGCATCTGCAGCACCGAAGCAAGCAACGCTTGACCAAGATCCACCAGTAT
CTCATCCGTATGCGAAAGCTGAAGCTCAAAGCCAAACCAAAGTTGGTCAC
CATCAACCCTAAGGTGAGACCGGCAGAGTGAGCTAGTTATAATCGACGGA
TGTGGAAGTGCGATGGTTTCACCTCAATTTTATAATCCTTGAAATATATT
AGCGGTTTTGTTTTGTCGTGACTGGTGAGTACCCTTGAACTGCGTTACAC
AATATTCAAGAATATACTTGAGACAGCAGGAGCGAAGTCCACAAGAGAGA
GGTATTTCTATGTGACTAAATGGTTGTCCCAGATGCGGGGAGTACACGTC
TATTTCAAACGCGTTATTCGTATTCGCACCCCGCGGTCGAGCACAAAGCT
CCGTCGTCCTGAAAACGCGTGATTAATAGTCCAACGATAGCGGCATGCAA
AACATGAGTACGCTCCCCTCCCCCTCCCCGGGTCAGAGCAGATAGCGTTT
TTTTCCACTTTTCGTTGCTCCCCCATTTTGGTCGTGTTTCCTTCGAGTTT
CTCGATGATTCGGGTTAAGAGAATTGCAACTCTGGAGTGTGCTGCTTTGC
CTTACAGACCTAGATTAATAAAGAAAATATCTCGTTTTCGCTCACCTATC
GCGTTACACTAGACGCCCGAGTGGCCCTGGCAATAGGCGAGAAATGTCAT
CATGATACCAAGGTGCATGCTTGCGGTGTTTCATGGTTTGTGTTTGTTAC
GAGTTCGAACCAGTTGGGTAGAAGCCTAGATTGTACACACCTCGGTATCT
GTGGCAGCTCCAATGTGCCAACTTCTTCATCTGATGGATACGCGACGGCC
TTGCGGTTGGAAACGTCGAAAGCTATGTCGACCTTTGTTTTCTCTGTGGA
GTGTACCCGTTGACCATGCTGGGCCCCACGTGTACCGTAAATTAATCGAG
GGTACAGGTTGAGAAGCGCGAAAAGCAACGAGAGAAGAAGGCGTTGGTGG
CGGCGAAGCTCGAACGGGCTATAGAAGGGGAACTGCTCGAACGACTAAAG
AAAGGGACGTACGGGGATATTTACAACTTTCCTGAGGTTCAGTATGACAA
GGTGGGGTGCGGGACGTCTTCTGCATGAATGTGCTGCATTGGTTTGTACT
TTGCTGTCCTCGTGGTGCTGCCCTTGTGATGCTCTCGCAAGTAAGGGCAG
TGCAGAAATCTCATCCATAGCGTGTTGTCGGCCCTGTCGTTGAAGCATGG
TTTGCTCAGTAGACTCGTGGGCAGCGGCCAGTCGAGGCCCCACTCTAAAG
TACGTTTTCGCATCGAACAGAAGGGGTTTTTGTCTGTGCCGCATCGGATT
CCAAGAAGTACGTTGTTTTCCCGAATGAAAGCGCGCAACTGGGTTTATCC
GACCTGGACCTGGTAAGATAGCTCAAACACAGTTGAGAGGCCATAGGACA
CCAACCATTACACCATGCCTCAATTTAGCGCTCCGCGCAACGTAGGGAAC
GTTCCGAGTGCAGCGCGGTGTGCGCTGTTATGTTCATCGGAGCGGGCACC
TTTACGGTTGTACGCTTGATCAATATTAGTCCACTCAGTACAGTGTACTT
CCGCCACGGTTGCTTTCATCAAGAGAGGATGTCGGCGGCGAGGTCTACTG
TGTGGCTTTTCGTTTTCATGTTGTTTTCTTTGGCACGTGTCGTATTTCAA
TCGCAGGTTCTAGAGAAGGCCGAGAATGACTATGCTGACGCTAATCCTGA
GGAAATGGAGGAAGAAGATGAAGAGGAAAATGAGGGCGAGGTGCGTTGGT
TGATAATTATTTGGGGTGCCCACTTCGTGTTTACCGTTATTGCCACCTTC
AGCCCTCCTGTTTGCAAAATGTCAAAAGCCGCGCACGAAATTACTGCCCG
ATGCGACGTACATCAGGCGAGATCGCCCATTTCCCTTCTCTAGATTGTGA
CTTCTTTCAGTGATTGATTGACCCTAGCAGCACCCTCAGCTCTCTCCAAG
CTGCAAGTGTTCACCTTGCTTTTACATACTCTTGGACTATATTCATGGGC
AAAGGTGGAGTATGTGGAAGACCTGGAGGAAGACGAAAGCGATATTGAAG
AAGCGGGAGAATGGGGAGGGTCGTACTGGGGTGCGCAAGGGACAGAGGGG
GGCGATGAAGACGAGGATGGAGAGGGAGATAGCGATGGCGAAGGGAATGG
TGCGTGCGAGCTGTTTATGGTCTCGTCTTGTAGATTTCTTGTCGTGATCT
TTCCTTTCTTGACACTTGGAAAGGACCCTTGTCCTGCGCTTCGATGTTGG
CATACTTCTACAATAGAGGGAAAATAATGCATACGAGTTGTGCGATCCCC
ATGATAAACTTTCGCTGCAACTTTCGTGCAGTTTTTCACGAGGTACACGT
GAGCTCGTGTGTGTGTGTTTCAATATCATGTACCGCGTATTAATATGCAA
GAAATACGGAGACGAGAGGGGGAGGAAATACAGAGCAGCTAGTGTCAAAT
TGAGTTTGTGAGGATTGCTATTGTGGAATAATATGGTTGTACAAGCCCTG
TGTCTATGTCTTGCTGCCTGTGGTCTGGTGGACAGAGATTTATGACATTC
AGCGGAGGAAATGGGCGATTGGTTGAATCCTGCACGTCTGCATACGTCTG
GTCAACTTCTCCAGTACGTTGGCGATGCTGCGCAAGAGTTCATCTTGTGC
GCAGCAGGTCATCATGTAGCTTGCAGCATGAGACTGGACTCATAACAGGG
CACTTCAACCTATGTGGCATATTGATCACCATGGTTTTGTGGTTTTGGTT
CTCCCGAAAAGTCCTACGTTTGGGTTGGTGACTTCATGTAGATATGTCCT
GTAGCTATCCACCGTCGGAGACTGCCGCTCACAAGCCATCCACGTACACA
CGAGCATTACGCACTGGTTTAACCGAACCGCTTTTGATCGGCTTCGCAAC
AGATGATGAGGAATCGGACAGCGAGGCCCCACAGGGTGGGATAGATTCGA
AGGGCAAGCGAAAGGCAAAGCCCGTTGACTCCAGCCGACATACGAGTAGC
TCCAGGACGGACGGGGATGCGAAGCGGCGAAAAGGAGCAAGCGGTGCAAC
GACCAAGCCGAAGAAGGCGAGACGGTCGAAACCGTCGCACCCGTACGTGG
AGGTGGAATATGAAGAGGAGACGGAGGGGGCGACAACAGAGTCCATGTCG
TTCAATTGGTAGTAGTGGGGGGTACTTTCGTCAAAAGCTTTAACTGGAGA
GCTGTGGGTTTGTGCATCGCGGACTGACGTCTCGTTTCGTATAGTCGTAA
CGTTCCTGTAGTTTTCATCATCTTGCTGCTGACTAGAACCCCTGGATGTC
ATTAGCTAGGTCATGTTTGTGACACTTACACCCCCAAAGAGGTGTGGGGC
AGTCTGCGTGGTATGAATTGTCATTTCCAAGCCTAGCGGACGTGACACTC
ACCTCCATGTTCGAACGAAGTAAGACAGCGGCTAGGGTTGGCGATGGCTA
CGAGAGTATAAACACACAGGAGCATTCACACCATAGTAGTACCACCCAGC
AAGTGGCAGTTGCTCAATAAACAAATCCGCCTTCCATCCCAGCATAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2702:14490..20187+

>mRNA_H-paniculata_contig2702.7394.1 ID=mRNA_H-paniculata_contig2702.7394.1|Name=mRNA_H-paniculata_contig2702.7394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at H-paniculata_contig2702:14490..20187+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTATCTCAGGAGCTGGAGTACTTCCCGAAGCATCTGCAGCACCGAAG
CAAGCAACGCTTGACCAAGATCCACCAGTATCTCATCCGTATGCGAAAGC
TGAAGCTCAAAGCCAAACCAAAGTTGGTCACCATCAACCCTAAGATGGTA
TCTCAGGAGCTGGAGTACTTCCCGAAGCATCTGCAGCACCGAAGCAAGCA
ACGCTTGACCAAGATCCACCAGTATCTCATCCGTATGCGAAAGCTGAAGC
TCAAAGCCAAACCAAAGTTGGTCACCATCAACCCTAAGGTTGAGAAGCGC
GAAAAGCAACGAGAGAAGAAGGCGTTGGTGGCGGCGAAGCTCGAACGGGC
TATAGAAGGGGAACTGCTCGAACGACTAAAGAAAGGGACGTACGGGGATA
TTTACAACTTTCCTGAGGTTCAGTATGACAAGGTTGAGAAGCGCGAAAAG
CAACGAGAGAAGAAGGCGTTGGTGGCGGCGAAGCTCGAACGGGCTATAGA
AGGGGAACTGCTCGAACGACTAAAGAAAGGGACGTACGGGGATATTTACA
ACTTTCCTGAGGTTCAGTATGACAAGGTTCTAGAGAAGGCCGAGAATGAC
TATGCTGACGCTAATCCTGAGGAAATGGAGGAAGAAGATGAAGAGGAAAA
TGAGGGCGAGGTTCTAGAGAAGGCCGAGAATGACTATGCTGACGCTAATC
CTGAGGAAATGGAGGAAGAAGATGAAGAGGAAAATGAGGGCGAGGTGGAG
TATGTGGAAGACCTGGAGGAAGACGAAAGCGATATTGAAGAAGCGGGAGA
ATGGGGAGGGTCGTACTGGGGTGCGCAAGGGACAGAGGGGGGCGATGAAG
ACGAGGATGGAGAGGGAGATAGCGATGGCGAAGGGAATGGTGGAGTATGT
GGAAGACCTGGAGGAAGACGAAAGCGATATTGAAGAAGCGGGAGAATGGG
GAGGGTCGTACTGGGGTGCGCAAGGGACAGAGGGGGGCGATGAAGACGAG
GATGGAGAGGGAGATAGCGATGGCGAAGGGAATGATGATGAGGAATCGGA
CAGCGAGGCCCCACAGGGTGGGATAGATTCGAAGGGCAAGCGAAAGGCAA
AGCCCGTTGACTCCAGCCGACATACGAGTAGCTCCAGGACGGACGGGGAT
GCGAAGCGGCGAAAAGGAGCAAGCGGTGCAACGACCAAGCCGAAGAAGGC
GAGACGGTCGAAACCGTCGCACCCGTACGTGGAGGTGGAATATGAAGAGG
AGACGGAGGGGGCGACAACAGAGTCCATGTCGTTCAATTGGTAGATGATG
AGGAATCGGACAGCGAGGCCCCACAGGGTGGGATAGATTCGAAGGGCAAG
CGAAAGGCAAAGCCCGTTGACTCCAGCCGACATACGAGTAGCTCCAGGAC
GGACGGGGATGCGAAGCGGCGAAAAGGAGCAAGCGGTGCAACGACCAAGC
CGAAGAAGGCGAGACGGTCGAAACCGTCGCACCCGTACGTGGAGGTGGAA
TATGAAGAGGAGACGGAGGGGGCGACAACAGAGTCCATGTCGTTCAATTG
GTAG
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