mRNA_H-paniculata_contig26953.7375.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26953.7375.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE) HSP 1 Score: 175 bits (444), Expect = 3.060e-50 Identity = 96/246 (39.02%), Postives = 148/246 (60.16%), Query Frame = 1
Query: 7 YVYSILKRFGIEEATPAKSPALG-KVMQQIGNDTQLDKQGTKQYQAIVGSITFLTQCTRFDICYSVSQAARFMSMPSQDNMIAIKRILRYPRLQPNLPIKYRKNNFEQMGYSDASYGGTEETRTKSTTGSKFFFASELVYLFSSLQRITATSSTEAELVALATCAKQGIYLSNLLMELGWTQLSKVKVLYDSKGALHLASNANFSSRSKHIVIRFAVLRQWNKNKRLVINHVSSQHQLSDVLTKQL 741
Y IL+R+G+E+A P +P G ++ + D L + +++Q I GS+ +L QCTR+D+ Y+V Q R + P+Q +M A K +LRY R P+LPI Y+K F ++D+S+G + +STTG FF L+ + Q + A ++ EAEL AL+ A++ +Y+SN + E+G+ V + DS GAL +ASNA FSSR+KHI +RF LR+ K R+ ++H S L+D+ TK L
Sbjct: 36 YARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNG-RSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHL 280
BLAST of mRNA_H-paniculata_contig26953.7375.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 177 bits (449), Expect = 1.330e-47 Identity = 97/246 (39.43%), Postives = 149/246 (60.57%), Query Frame = 1
Query: 7 YVYSILKRFGIEEATPAKSPALG-KVMQQIGNDTQLDKQGTKQYQAIVGSITFLTQCTRFDICYSVSQAARFMSMPSQDNMIAIKRILRYPRLQPNLPIKYRKNNFEQMGYSDASYGGTEETRTKSTTGSKFFFASELVYLFSSLQRITATSSTEAELVALATCAKQGIYLSNLLMELGWTQLSKVKVLYDSKGALHLASNANFSSRSKHIVIRFAVLRQWNKNKRLVINHVSSQHQLSDVLTKQL 741
Y IL+R+G+E+A P +P G ++ + D L + +++QAI GS+ +L QCTR+D+ Y+V Q R + P+Q +M A K +LRY R P+LPI Y+K F ++D+S+G + +STTG FF L+ + Q + A ++ EAEL AL+ A++ +Y+SN + E+G+ V + DS GAL +ASNA FSSR+KHI +RF LR+ K R+ ++H S L+D+ TK L
Sbjct: 473 YARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNG-RSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHL 717
BLAST of mRNA_H-paniculata_contig26953.7375.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 171 bits (434), Expect = 1.350e-45 Identity = 103/251 (41.04%), Postives = 156/251 (62.15%), Query Frame = 1
Query: 1 HKYVYSILKRFGIEEATPAKSPALG-KVMQQIGNDTQLDKQGTKQYQAIVGSITFLTQCTRFDICYSVSQAARFMSMPSQDNMIAIKRILRYPRLQPNLPIKYRKNNFEQMGYSDASYGGTEETRTK-STTGSKFFFASELVYLFSSLQRITATSSTEAELVALATCAKQGIYLSNLLMELGWTQLSKVKVLYDSKGALHLASNANFSSRSKHIVIRFAVLRQWNKNK-RLVINHVSSQHQLSDVLTKQLD 744
HKYV +IL ++ + + PA +P G ++ Q+ N L ++ K YQ IVGS+ FLT TR++I Y+V R M+ P+ +M+ KR+LRY R P++P+K+R+ ++ Y DAS+ G+ E K S+TG F A +V S+LQ++TA SS AE++A+AT A++ IYL +L ELG+ + + DS GA+ A N+ F RSK I R+ +LRQ N NK +V+ V S+ QL+D+LTK L+
Sbjct: 440 HKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFP-CGNIPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQ-NVNKGNIVLKFVRSEEQLADILTKHLE 688
BLAST of mRNA_H-paniculata_contig26953.7375.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE) HSP 1 Score: 172 bits (435), Expect = 2.660e-45 Identity = 94/240 (39.17%), Postives = 146/240 (60.83%), Query Frame = 1
Query: 25 KRFGIEEATPAKSPALG-KVMQQIGNDTQLDKQGTKQYQAIVGSITFLTQCTRFDICYSVSQAARFMSMPSQDNMIAIKRILRYPRLQPNLPIKYRKNNFEQMGYSDASYGGTEETRTKSTTGSKFFFASELVYLFSSLQRITATSSTEAELVALATCAKQGIYLSNLLMELGWTQLSKVKVLYDSKGALHLASNANFSSRSKHIVIRFAVLRQWNKNKRLVINHVSSQHQLSDVLTKQL 741
+R+G+E+A P +P G ++ + D L + +++QAI GS+ +L QCTR+D+ Y+V Q R + P+Q +M A K +LRY R P+LPI Y+K F ++D+S+G + +STTG FF L+ + Q + A ++ EAEL AL+ A++ +Y+SN + E+G+ V + DS GAL +ASNA FSSR+KHI +RF LR+ K R+ ++H S L+D+ TK L
Sbjct: 638 ERYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDMSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNG-RSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHL 876
BLAST of mRNA_H-paniculata_contig26953.7375.1 vs. uniprot
Match: A0A6H5KY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY35_9PHAE) HSP 1 Score: 167 bits (423), Expect = 1.450e-44 Identity = 94/244 (38.52%), Postives = 144/244 (59.02%), Query Frame = 1
Query: 7 YVYSILKRFGIEEATPAKSPALG-KVMQQIGNDTQLDKQGTKQYQAIVGSITFLTQCTRFDICYSVSQAARFMSMPSQDNMIAIKRILRYPRLQPNLPIKYRKNNFEQMGYSDASYGGTEETRTKSTTGSKFFFASELVYLFSSLQRITATSSTEAELVALATCAKQGIYLSNLLMELGWTQLSKVKVLYDSKGALHLASNANFSSRSKHIVIRFAVLRQWNKNKRLVINHVSSQHQLSDVLTK 735
Y L+R+G+E+A P +P G ++ + D QL+ + ++QAI GS+ +L QCTR+D+ Y+V Q R + P+Q +M A K +LRY R P LPI Y+K F ++++S+G + +STTG FF L+ + Q + A ++ EAEL AL A++ +Y+SN + E+G+ V + DS GAL +ASNA FSSR+KHI +RF R+ K R+ + H S L+D+ TK
Sbjct: 333 YARDTLQRYGMEQANPVSTPGYGAELSTEQPQDQQLEPEDKHRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPGLPIVYKKGQFRLSCFTESSFGANPDNG-RSTTGYMFFLGGGLISYGAKAQTLAAQNTVEAELQALGFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFPRELTKGHRITL-HQPSATMLADIATK 574
BLAST of mRNA_H-paniculata_contig26953.7375.1 vs. uniprot
Match: A0A6H5K8X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8X2_9PHAE) HSP 1 Score: 153 bits (386), Expect = 8.120e-42 Identity = 89/239 (37.24%), Postives = 138/239 (57.74%), Query Frame = 1
Query: 28 RFGIEEATPAKSPALG-KVMQQIGNDTQLDKQGTKQYQAIVGSITFLTQCTRFDICYSVSQAARFMSMPSQDNMIAIKRILRYPRLQPNLPIKYRKNNFEQMGYSDASYGGTEETRTKSTTGSKFFFASELVYLFSSLQRITATSSTEAELVALATCAKQGIYLSNLLMELGWTQLSKVKVLYDSKGALHLASNANFSSRSKHIVIRFAVLRQWNKNKRLVINHVSSQHQLSDVLTKQL 741
R+G+E+A P +P G ++ + D L + +++QAI GS+ + QCTR+ + Y+V Q R + P+Q +M A K +LRY R P+LPI Y+K F ++D+S+G + +STTG F L+ + Q + A ++ E EL AL+ A + +Y+SN + E+G+ V + DS GAL +ASNA FSSR+KHI F LR+ K R+ ++H S L+D+ TK L
Sbjct: 22 RYGMEQANPVSTPGYGAELPTEQPQDQLLGPEDKQRFQAITGSLLCVAQCTRYHLSYAVHQPTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDIG-RSTTGYLFCVGGGLIGYGAKAQTLAAQNTVEVELQALSFSACEAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIRFFFFFLRELTKGHRITLHHQPSATMLADIATKHL 259
BLAST of mRNA_H-paniculata_contig26953.7375.1 vs. uniprot
Match: A0A6H5JN55_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN55_9PHAE) HSP 1 Score: 161 bits (407), Expect = 1.280e-41 Identity = 95/247 (38.46%), Postives = 143/247 (57.89%), Query Frame = 1
Query: 7 YVYSILKRFGIEE-ATPAKSPALG-KVMQQIGNDTQLDKQGTKQYQAIVGSITFLTQCTRFDICYSVSQAARFMSMPSQDNMIAIKRILRYPRLQPNLPIKYRKNNFEQMGYSDASYGGTEETRTKSTTGSKFFFASELVYLFSSLQRITATSSTEAELVALATCAKQGIYLSNLLMELGWTQLSKVKVLYDSKGALHLASNANFSSRSKHIVIRFAVLRQWNKNKRLVINHVSSQHQLSDVLTKQL 741
YV IL G E A P +P G ++ + D L + +++QAI GS+ +L QCTR+D+ Y+V Q R + P+Q +M A K +LRY R P+LPI Y+K F ++D+S+G + R +S TG F L+ + Q + A ++ EAEL AL+ A++ +Y+SN + E+G+ V + DS GAL +ASNA FSSR+KHI +RF L + K R+ ++H S L+D+ TK L
Sbjct: 549 YVDDILSTGGNNEIANPVSTPGYGAELSTEQPQDQLLGTEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNR-RSPTGYLFSLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLGELTKRHRITLHHQPSATMLADIATKHL 794
BLAST of mRNA_H-paniculata_contig26953.7375.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 160 bits (405), Expect = 3.720e-41 Identity = 88/219 (40.18%), Postives = 134/219 (61.19%), Query Frame = 1
Query: 7 YVYSILKRFGIEEATPAKSPALG-KVMQQIGNDTQLDKQGTKQYQAIVGSITFLTQCTRFDICYSVSQAARFMSMPSQDNMIAIKRILRYPRLQPNLPIKYRKNNFEQMGYSDASYGGTEETRTKSTTGSKFFFASELVYLFSSLQRITATSSTEAELVALATCAKQGIYLSNLLMELGWTQLSKVKVLYDSKGALHLASNANFSSRSKHIVIRFAVLR 660
Y IL+R+G+E+A P +P G ++ + D L + +++QAI GS+ +L QCTR+D+ Y+V Q R + P+Q +M A K +LRY R P+LPI Y+K F ++D+S+G + +STTG FF L+ + Q + A ++ EAEL AL+ A++ +Y+SN + E+G+ V + DS GAL +ASNA FSSR+KHI +RF LR
Sbjct: 1252 YARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNG-RSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLR 1469
BLAST of mRNA_H-paniculata_contig26953.7375.1 vs. uniprot
Match: A0A0J7KMA5_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KMA5_LASNI) HSP 1 Score: 144 bits (362), Expect = 3.110e-38 Identity = 89/247 (36.03%), Postives = 142/247 (57.49%), Query Frame = 1
Query: 4 KYVYSILKRFGIEEATPAKSPALGKVMQQIGNDTQLDKQGTKQYQAIVGSITFLTQCTRFDICYSVSQAARFMSMPSQDNMIAIKRILRYPRLQPNLPIKYRKN-NFEQMGYSDASYGGTEETRTKSTTGSKFFFASELVYLFSSLQRITATSSTEAELVALATCAKQGIYLSNLLMELGWTQLSKVKVLYDSKGALHLASNANFSSRSKHIVIRFAVLRQWNKNKRLVINHVSSQHQLSDVLTKQL 741
+Y+ +L++F + E+ +PA+ K + + Q ++ + ++++ VGS+ F TR DI ++VS +RFM+ P+ IKRILRY + ++ I YR N N E + YSDA Y +TR KST+G A+ V S Q+I A S+TEAE VA A KQ ++L NLL + Q S + D++GAL + N R+KHI +R+ ++R K + +++V S+ QL+D+LTK+L
Sbjct: 18 QYIKRVLEKFRMTESKAVTTPAVAKEYLENAQEEQFSEKSSTEFRSAVGSLMFTAVATRPDIMFAVSSVSRFMAKPTAGAWQQIKRILRYLKGTTSMGITYRANGNQELIAYSDADYANCVQTR-KSTSGLVLILANGPVVWTSQQQQIVARSTTEAEYVAAAEATKQVLWLRNLLKSIDIDQ-STTTLYVDNQGALKIVENQEHHRRTKHIDVRYHLIRDHTMKKDITVDYVPSEEQLADILTKRL 262
BLAST of mRNA_H-paniculata_contig26953.7375.1 vs. uniprot
Match: I1Q6H0_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1Q6H0_ORYGL) HSP 1 Score: 144 bits (363), Expect = 3.540e-38 Identity = 96/254 (37.80%), Postives = 142/254 (55.91%), Query Frame = 1
Query: 4 KYVYSILKRFGIEEATPAKSPALGKVMQQIGNDTQLDKQGT----KQYQAIVGSITFLTQCTRFDICYSVSQAARFMSMPSQDNMIAIKRILRYPRLQPNLPIKYRKN-NFEQMGYSDASYGGTEETRTKSTTGSKFFFASELVYLFSSLQRITATSSTEAELVALATCAKQGIYLSNLLMELGWTQLSKVKVLYDSKGALHLASNANFSSRSKHIVIRFAVLRQWNKNKRLVINHVSSQHQLSDVLTKQLDPR 750
KYV ILK+FG+E+A P K+P LD+ G K Y++++GS+ +L +R +I SV ARF + P + ++IA+KRILRY PNL + Y K +FE +GYSD Y G + R KSTTG+ F LV S Q A S+ EAE VA +C Q +++ L + G+ +K+ +L D++ A+ +A+N SR+KHI IR LR + + HV ++ QL+D+ TK LD +
Sbjct: 34 KYVNDILKKFGMEDAKPIKTPM------PTNGHLDLDENGKCVDQKVYRSMIGSLLYLC-ASRPNIMLSVCMCARFQAEPKECHLIAVKRILRYSVHTPNLGLWYPKGCDFELLGYSDPDYAGCKVDR-KSTTGTCQFLGRSLVSWSSKKQNSIALSTAEAEYVAAGSCCAQLLWMKQTLKDFGYN-FTKIPLLCDNESAIKIANNPVQHSRTKHIDIRHHFLRDHETKGDICLTHVRTESQLADIFTKPLDEK 278 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26953.7375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26953.7375.1 >prot_H-paniculata_contig26953.7375.1 ID=prot_H-paniculata_contig26953.7375.1|Name=mRNA_H-paniculata_contig26953.7375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=252bp HKYVYSILKRFGIEEATPAKSPALGKVMQQIGNDTQLDKQGTKQYQAIVGback to top mRNA from alignment at H-paniculata_contig26953:2267..3022- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26953.7375.1 ID=mRNA_H-paniculata_contig26953.7375.1|Name=mRNA_H-paniculata_contig26953.7375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=756bp|location=Sequence derived from alignment at H-paniculata_contig26953:2267..3022- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26953:2267..3022- >mRNA_H-paniculata_contig26953.7375.1 ID=mRNA_H-paniculata_contig26953.7375.1|Name=mRNA_H-paniculata_contig26953.7375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at H-paniculata_contig26953:2267..3022- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |