mRNA_H-paniculata_contig2693.7368.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2693.7368.1
Unique NamemRNA_H-paniculata_contig2693.7368.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2693.7368.1 vs. uniprot
Match: D8LFS3_ECTSI (Cytochrome c oxidase subunit Vb n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFS3_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 6.500e-25
Identity = 66/143 (46.15%), Postives = 82/143 (57.34%), Query Frame = 2 
Query:  113 MLSAVVRRAGAARATSAAASAKLVHLRPNTQTSSALPKALITCSQQKATFFGRLWNSNMKAEIPETHATGAEAREMDDVVFNREPVHPPKGAGTKEKPIEVPSEFSQRAVGYEDPETHAIYWFNLKRGNLAYVTEIDMYFKLV 541
            M S V R  G A        A+   LRP   T++A  +A      Q A F   + +      IP+TH TG +  E + V FNR+P+HPPKG+GTK  P EVPSE  +R VG+E PE+HA+YWF L  G L YV EID YFKLV
Sbjct:    1 MFSTVARHVGVA--------ARAAALRPQ-PTAAAAWRASAAALPQVARFSDGVGDGG----IPDTHDTGRQKTEREGVGFNRDPIHPPKGSGTKAMPFEVPSEHQERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKLV 130
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BLAST of mRNA_H-paniculata_contig2693.7368.1 vs. uniprot
Match: A0A835ZBD2_9STRA (Cytochrome c oxidase subunit VB n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBD2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.090e-22
Identity = 51/99 (51.52%), Postives = 66/99 (66.67%), Query Frame = 2 
Query:  248 QKATFFGRLWNSNMKAEIPETH--ATGAEAREMDDVVFNREPVHPPKGAGTKEKPIEVPSEFSQRAVGYEDPETHAIYWFNLKRGNLAYVTEIDMYFKL 538
            ++ ++F +L++     +I E    ATG    E+    FN + + PP G+GT+EKPIEVPS    R VGYEDPETHAIYWFNLK G + +VT IDMYFKL
Sbjct:   27 KEESWFSKLFSFKSDRDIVEEDVAATGQRGEEVRGTFFNDQALMPPAGSGTREKPIEVPSRLDMRTVGYEDPETHAIYWFNLKAGKVHHVTPIDMYFKL 125
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BLAST of mRNA_H-paniculata_contig2693.7368.1 vs. uniprot
Match: A0A6U3QRH7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3QRH7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.780e-17
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 2 
Query:  311 HATGAEAREMDD-----VVFNREPVHPPKGAGTKEKPIEVPSEFSQRAVGYEDPETHAIYWFNLKRGNLAYVTEIDMYFKLV 541
            H  G   +E++D     V FNR+P+ PP GAGTKE PI+VPS + +R VG+EDP  H + WF +  G L YV+ ID YF LV
Sbjct:   45 HQGGRRLQEIEDEKLGLVTFNRDPIMPPVGAGTKENPIQVPSGYDERVVGFEDPTVHQLQWFTMTAGKLHYVSSIDKYFTLV 126
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BLAST of mRNA_H-paniculata_contig2693.7368.1 vs. uniprot
Match: A0A7S1XX62_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX62_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 9.680e-17
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 2 
Query:  326 EAREMDDVVFNREPVHPPKGAGTKEKPIEVPSEFSQRAVGYEDPETHAIYWFNLKRGNLAYVTEIDMYFKL--VDSP 550
            +A +  D++FNR+P+ PP GAGTKE PI VPSEF +R VG+EDP+TH I WF L+     Y+  +D YFKL  +++P
Sbjct:   53 DAEKSGDLLFNRDPIVPPVGAGTKENPILVPSEFKERVVGFEDPDTHQIAWFCLQADATYYIESVDKYFKLHTIENP 129
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BLAST of mRNA_H-paniculata_contig2693.7368.1 vs. uniprot
Match: A0A6U1NDJ1_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NDJ1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.440e-12
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 2 
Query:  344 DVVFNREPVHPPKGAGTKEKPIEVPSEFSQRAVGYEDPETHAIYWFNLKRGNLAYVTEIDMYFKLVDS 547
            +V + R+PV P  G GT   PI VPS   +RAVG+EDP +H + WF L+ G++ +V EIDMYFKL+ S
Sbjct:   58 EVAYVRDPVIPEPGQGTLANPILVPSAMKERAVGFEDPLSHQMQWFVLQEGDIHWVEEIDMYFKLIKS 125
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BLAST of mRNA_H-paniculata_contig2693.7368.1 vs. uniprot
Match: A0A7S1VA55_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VA55_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.330e-9
Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:  326 EAREMDDVVFNREPVHPPKGAGTKEKPIEVPSEFSQRAVGYEDPETHAIYWFNLKRGNLAY-VTEIDMYFKLVDSPEFE 559
            E  E ++  +N   + PP+G GT + PI +PS F  R VGY+DP THA++WF++   N AY + ++ ++FK++  P+ E
Sbjct:  107 ELEEKNNEGYNDLGLVPPEGTGTFKSPILIPSRFHSRVVGYQDPTTHAMFWFSIHNDNNAYYIKDLGLFFKMLHIPDPE 185
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BLAST of mRNA_H-paniculata_contig2693.7368.1 vs. uniprot
Match: A0A7S2UEP8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEP8_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.790e-9
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 2 
Query:  287 MKAEIPETHATGAEAREMDDVV------FNREPVHPPKGAGTKEKPIEVPSEFSQRAVGYEDPETHAIYWFNLKR-GNLAYVTEIDMYFKLVDSPE 553
            MK ++ E    G E  E+D++       +N   + PP+GAG+   PI +PS    R VGY DPETHA+YWFN+    N  Y+ ++ ++FK++  PE
Sbjct:   70 MKKDLEELGLDGIE--ELDELEEANMEGYNDLGLVPPEGAGSFASPILIPSRLDCRQVGYCDPETHAMYWFNIYNDNNTYYIKDLGLFFKMLPIPE 163
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BLAST of mRNA_H-paniculata_contig2693.7368.1 vs. uniprot
Match: K0SFK1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SFK1_THAOC)

HSP 1 Score: 67.4 bits (163), Expect = 3.820e-9
Identity = 49/172 (28.49%), Postives = 84/172 (48.84%), Query Frame = 2 
Query:   74 PYITQCAAKIKHTMLSAVVRRAGAARATSAAASAKLVHLRPNTQTSSALPKALITCSQQKATFFGRLWN---SNMKAEIPETHATGAEAREMDDVV------FNREPVHPPKGAGTKEKPIEVPSEFSQRAVGYEDPETHAIYWFNLKRG-NLAYVTEIDMYFKLVDSPEFE 559
            P +T  A+ ++ T L+A  RRA A    +  A+  +  +          P  LI   Q + T  G +      ++K E+ +    G E  ++D++       +N   + PP+GAG+   PI +PS    R VGY DP THA++WF +    N  Y+ ++ ++FK++  P+ E
Sbjct:   28 PSVTMFASSVRRTALTAC-RRAAATNTGAVGATRSMAKMPFGLDKILGEPDNLIPTDQMRKTKKGYIPEFAPDDLKKEMADLGIDGVE--DLDELEEKNMEGYNNLGLVPPEGAGSFASPILIPSRMDSRVVGYNDPTTHAVFWFTIHNDDNTYYIKDLGLFFKMLHIPDEE 196
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BLAST of mRNA_H-paniculata_contig2693.7368.1 vs. uniprot
Match: A0A7S2PUP9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PUP9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.000e-9
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 2 
Query:  353 FNREPVHPPKGAGTKEKPIEVPSEFSQRAVGYEDPETHAIYWFNLKR-GNLAYVTEIDMYFKLVDSPEFE 559
            +N   + PP+GAGT   PI +PS    R VGY DP THA++WF ++   N  Y+ ++ ++FK++  P+ E
Sbjct:   96 YNNLGLVPPEGAGTYASPILIPSRMDSRVVGYNDPTTHALFWFTIQNDNNTYYIKDLGLFFKMLHIPDEE 165
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BLAST of mRNA_H-paniculata_contig2693.7368.1 vs. uniprot
Match: A0A7S0GFG8_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GFG8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.550e-8
Identity = 26/63 (41.27%), Postives = 44/63 (69.84%), Query Frame = 2 
Query:  374 PPKGAGTKEKPIEVPSEFSQRAVGYEDPETHAIYWFNLKR-GNLAYVTEIDMYFKLVDSPEFE 559
            PP+ AGT + PI +PS   +R VGY DP +HA++WFN++  GNL ++ ++ ++FK++   + E
Sbjct:  102 PPEDAGTFQNPILIPSRLEERQVGYTDPVSHAVFWFNIQNDGNLYFIKDLGLFFKVLPVADIE 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2693.7368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LFS3_ECTSI6.500e-2546.15Cytochrome c oxidase subunit Vb n=2 Tax=Ectocarpus... [more]
A0A835ZBD2_9STRA4.090e-2251.52Cytochrome c oxidase subunit VB n=1 Tax=Tribonema ... [more]
A0A6U3QRH7_9STRA7.780e-1750.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1XX62_9STRA9.680e-1751.95Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U1NDJ1_9STRA1.440e-1251.47Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S1VA55_9STRA2.330e-939.24Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]
A0A7S2UEP8_9STRA3.790e-938.54Hypothetical protein n=1 Tax=Attheya septentrional... [more]
K0SFK1_THAOC3.820e-928.49Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2PUP9_9STRA7.000e-940.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S0GFG8_9STRA1.550e-841.27Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2693contigH-paniculata_contig2693:16357..18242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue4e-22
Seed eggNOG ortholog2880.D8LFS3
Hectar predicted targeting categorymitochondrion
EggNOG OGs2E9H5@1,2SFV0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1886
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2693.7368.1prot_H-paniculata_contig2693.7368.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2693 16469..16924 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929809.1455624-UTR-H-paniculata_contig2693:16356..164681622929809.1455624-UTR-H-paniculata_contig2693:16356..16468Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2693 16357..16468 +
1691481020.5584629-UTR-H-paniculata_contig2693:16356..164681691481020.5584629-UTR-H-paniculata_contig2693:16356..16468Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2693 16357..16468 +
1622929809.1726358-UTR-H-paniculata_contig2693:16924..182421622929809.1726358-UTR-H-paniculata_contig2693:16924..18242Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2693 16925..18242 +
1691481020.5852928-UTR-H-paniculata_contig2693:16924..182421691481020.5852928-UTR-H-paniculata_contig2693:16924..18242Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2693 16925..18242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929809.1604497-CDS-H-paniculata_contig2693:16468..169241622929809.1604497-CDS-H-paniculata_contig2693:16468..16924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2693 16469..16924 +
1691481020.5698564-CDS-H-paniculata_contig2693:16468..169241691481020.5698564-CDS-H-paniculata_contig2693:16468..16924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2693 16469..16924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2693.7368.1

>prot_H-paniculata_contig2693.7368.1 ID=prot_H-paniculata_contig2693.7368.1|Name=mRNA_H-paniculata_contig2693.7368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MLSAVVRRAGAARATSAAASAKLVHLRPNTQTSSALPKALITCSQQKATF
FGRLWNSNMKAEIPETHATGAEAREMDDVVFNREPVHPPKGAGTKEKPIE
VPSEFSQRAVGYEDPETHAIYWFNLKRGNLAYVTEIDMYFKLVDSPEFEE
V*
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mRNA from alignment at H-paniculata_contig2693:16357..18242+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2693.7368.1 ID=mRNA_H-paniculata_contig2693.7368.1|Name=mRNA_H-paniculata_contig2693.7368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1886bp|location=Sequence derived from alignment at H-paniculata_contig2693:16357..18242+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTGCTGCTCTGACTGTCACTCCGATCCCTCTGTACTCATCCAAGGTT
CGAAGCTGCAGTTAGTCGCGCACCCATACATCACTCAGTGTGCTGCTAAA
ATTAAACATACCATGCTGTCTGCCGTAGTGAGGCGCGCGGGTGCGGCACG
CGCAACAAGTGCAGCAGCATCAGCCAAGCTTGTGCATCTCCGACCTAACA
CCCAGACATCATCAGCCCTGCCCAAGGCACTCATCACCTGTTCTCAGCAG
AAGGCCACCTTCTTTGGCAGGCTTTGGAACTCGAACATGAAGGCCGAGAT
CCCCGAGACCCACGCCACCGGAGCGGAGGCTCGTGAGATGGACGACGTAG
TGTTTAACCGTGAGCCGGTGCACCCTCCCAAGGGCGCGGGCACGAAGGAA
AAGCCGATCGAGGTGCCATCCGAGTTCAGCCAAAGGGCCGTCGGCTACGA
GGACCCGGAGACCCATGCTATCTACTGGTTTAACTTAAAGCGTGGGAACC
TGGCCTATGTCACCGAAATCGACATGTACTTCAAGCTTGTGGATAGTCCT
GAGTTCGAAGAAGTGTAGGTGGTCATTTTCAAGCTAGGAGGGTGCGGGGA
GAGGGGCGGTCGTTGTGATGTGGTGTCTCTTTGGAGGGGTGCGTGGCTGG
CTGTGTGTGTGCGCGGTGCGTTTGGTTGCTGACAACAATCCCCATGAGAA
CACGGCTTGATCCGTCGATTTGGGGTGGAACTGGGGGGGGCCTTGACCCA
CGCAGACAACGCGAGGTATTGAGAGATGTGCGAGGACATGGGGCTTGGGC
ACCAATCACTCGTGAGCTGGATTGCCGAGGAATTAATGGGCTCACGACCT
GTGAAGTGCAAGGAACACCTGACTGAGCGTACGGTGACAGGTGGCGAGTG
AGACTTAGGCTAGGATTAACTGAGGTGACAGGTAGTAGTCACTTGTTTCG
ATAGTATTGCAATGACTGCGGTATTTGGGCAGGATCGACAGAGATGGGCC
CGGGGCTGTTTCAGAGTAGTTGATGCACTTTTTCTCTCGCCTGCTCGAGT
GAGGTTTTTGTGGCATTCGTTTTCCATCAACGTTGTATAACCGAAGAACA
CGACGATTGCAGTACGTCGCAGTCCATGGCAGTCTAACAAGCAATATGAG
TTCAGTCTGTAGTCAGTAGTCGCATCCCAACTTTTGTCTGCTCCCTTGCC
TGGCAAGGGAATCATGTAGGAGGGGGATCGGTAAAAGCGTACAGCAATAG
AAATATTGCGCATAGTCGTACCTGTTTCCCCTTTCCGTTGGAATGCGTAT
TTTATGGTGCAATAACAGGCATGTAGGGAAAGTGGGCTGAGGGTATGGGT
CTGTTTTTACAGGCCCGTTCGTTCGTGACGGTATGGTGTGCTTTTTTGGT
ATCGCAGTCAGTGGAAATTAATGTTCAAGAAATTGAAACAAAATTTGTCG
TTGATACATATTTTTTGCTCTTTAAGAGTCGCTGCGGATCGCTGTAAGAA
GTGGTTTCGCCCCTAGGTCACAGGCCTAGACGAGGCGGGCGGTTCTCGCC
ACCGTTGGTAGGAAATTCACTTGTGGTGCCTCCATGGATAGATCATTATT
CAATAGTCGGTGACAAACCGTCCGTAAGAGTGAGTTATAGACCAACACGC
AATATACACGATATCGTATCATACCTCCTTGAAACGGACTGCCGGCTGCG
CCTCTTTAAAATCCGAGGATTATTTCCGACAGAGTTTTTGTACAATTTGG
ATCATATGCTCAATCTACGACAAAAAGTGGAGATATTGCGTATTTACATT
GGACAAATGGATGAAACCTTTTTTTATTTTTCGCTTCACAACGTAGTCCT
CTGTTATTCTGTTTTCCGTCACGGTTGCAATCTTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig2693:16357..18242+

>mRNA_H-paniculata_contig2693.7368.1 ID=mRNA_H-paniculata_contig2693.7368.1|Name=mRNA_H-paniculata_contig2693.7368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig2693:16357..18242+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTCTGCCGTAGTGAGGCGCGCGGGTGCGGCACGCGCAACAAGTGC
AGCAGCATCAGCCAAGCTTGTGCATCTCCGACCTAACACCCAGACATCAT
CAGCCCTGCCCAAGGCACTCATCACCTGTTCTCAGCAGAAGGCCACCTTC
TTTGGCAGGCTTTGGAACTCGAACATGAAGGCCGAGATCCCCGAGACCCA
CGCCACCGGAGCGGAGGCTCGTGAGATGGACGACGTAGTGTTTAACCGTG
AGCCGGTGCACCCTCCCAAGGGCGCGGGCACGAAGGAAAAGCCGATCGAG
GTGCCATCCGAGTTCAGCCAAAGGGCCGTCGGCTACGAGGACCCGGAGAC
CCATGCTATCTACTGGTTTAACTTAAAGCGTGGGAACCTGGCCTATGTCA
CCGAAATCGACATGTACTTCAAGCTTGTGGATAGTCCTGAGTTCGAAGAA
GTGTAGATGCTGTCTGCCGTAGTGAGGCGCGCGGGTGCGGCACGCGCAAC
AAGTGCAGCAGCATCAGCCAAGCTTGTGCATCTCCGACCTAACACCCAGA
CATCATCAGCCCTGCCCAAGGCACTCATCACCTGTTCTCAGCAGAAGGCC
ACCTTCTTTGGCAGGCTTTGGAACTCGAACATGAAGGCCGAGATCCCCGA
GACCCACGCCACCGGAGCGGAGGCTCGTGAGATGGACGACGTAGTGTTTA
ACCGTGAGCCGGTGCACCCTCCCAAGGGCGCGGGCACGAAGGAAAAGCCG
ATCGAGGTGCCATCCGAGTTCAGCCAAAGGGCCGTCGGCTACGAGGACCC
GGAGACCCATGCTATCTACTGGTTTAACTTAAAGCGTGGGAACCTGGCCT
ATGTCACCGAAATCGACATGTACTTCAAGCTTGTGGATAGTCCTGAGTTC
GAAGAAGTGTAG
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