mRNA_H-paniculata_contig269.7356.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig269.7356.1
Unique NamemRNA_H-paniculata_contig269.7356.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig269.7356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig269contigH-paniculata_contig269:3243..4109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size385
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig269.7356.1prot_H-paniculata_contig269.7356.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig269 3245..4109 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929807.3231025-CDS-H-paniculata_contig269:3244..34261622929807.3231025-CDS-H-paniculata_contig269:3244..3426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig269 3245..3426 -
1691481019.662621-CDS-H-paniculata_contig269:3244..34261691481019.662621-CDS-H-paniculata_contig269:3244..3426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig269 3245..3426 -
1622929807.3383908-CDS-H-paniculata_contig269:3483..35141622929807.3383908-CDS-H-paniculata_contig269:3483..3514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig269 3484..3514 -
1691481019.682674-CDS-H-paniculata_contig269:3483..35141691481019.682674-CDS-H-paniculata_contig269:3483..3514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig269 3484..3514 -
1622929807.3556273-CDS-H-paniculata_contig269:3941..41091622929807.3556273-CDS-H-paniculata_contig269:3941..4109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig269 3942..4109 -
1691481019.6939824-CDS-H-paniculata_contig269:3941..41091691481019.6939824-CDS-H-paniculata_contig269:3941..4109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig269 3942..4109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig269.7356.1

>prot_H-paniculata_contig269.7356.1 ID=prot_H-paniculata_contig269.7356.1|Name=mRNA_H-paniculata_contig269.7356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
EDVGNGKDSSSIETIDGLPILGLRQCQQDYPENRKRINNVDESNTAVDPD
GLSDTKHQAHASNNDQKCTAVLDSHVTATPSHKTVTRVNSSESFLKRNTG
EPKKSKLLSPRAKDKPHIKNDGAQVGQ
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mRNA from alignment at H-paniculata_contig269:3243..4109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig269.7356.1 ID=mRNA_H-paniculata_contig269.7356.1|Name=mRNA_H-paniculata_contig269.7356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=867bp|location=Sequence derived from alignment at H-paniculata_contig269:3243..4109- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGATGTGGGAAATGGCAAGGATAGCTCATCCATAGAAACGATTGACGG
GTTGCCGATATTAGGTCTTCGGCAATGTCAACAGGATTACCCGGAGAACA
GAAAACGTATCAACAACGTTGACGAAAGCAATACAGCTGTGGATCCGGAC
GGCCTTTCCGACACCAAGGTGAGAGCGGAGCGCTTTCTTGTGATTGTGCT
TACGATTGTAGCATGTCAAGCATTAGCTTTCTACGGGTACGGCTGATAAA
ATTTGAAAGAATAAATAGAGTCTCCTTCGCCGAGCTATAGGTAGCGGTGC
GGCACAAAAGGGTTTAGAGGTACGAGTCATCGAAACGTTTACTCTTCACT
ACACCCTTCTCAATTGAGCACTTGGATGCTTCGAAGATATCTCCGCTCCA
TCAACTTCTGTGTTTCTTCCAGCCACGTGTTTTTTCATCTTTAGACGTGA
AGCCCTTCTGCAATCTCGACGCCTGCCAATGCACCGAAGTGATGACATAC
CGCCATATTGGTGATTTTCCTTTCCTTCTCCCATTCTGTGAAATCCATCG
ACTTTTCTCTCACTCGCATGCGCACCAACCACCTACGATCACAAGCACCA
AGCACATGCATCTAACAACGATCAAAGTGGTCAAGAGCAGCAGCGCAACG
ACTCGAACAAGATAACGGCAAACTTAACAGAAGAATGTACCGCAGTGTTG
GATTCCCACGTGACAGCGACACCATCACACAAGACGGTCACAAGAGTCAA
CTCTTCCGAGTCCTTCCTAAAACGGAACACGGGTGAACCGAAGAAGAGTA
AACTCTTGTCGCCACGTGCAAAAGACAAACCTCACATCAAAAATGATGGT
GCGCAAGTAGGACAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig269:3243..4109-

>mRNA_H-paniculata_contig269.7356.1 ID=mRNA_H-paniculata_contig269.7356.1|Name=mRNA_H-paniculata_contig269.7356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig269:3243..4109- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGATGTGGGAAATGGCAAGGATAGCTCATCCATAGAAACGATTGACGG
GTTGCCGATATTAGGTCTTCGGCAATGTCAACAGGATTACCCGGAGAACA
GAAAACGTATCAACAACGTTGACGAAAGCAATACAGCTGTGGATCCGGAC
GGCCTTTCCGACACCAAGGAAGATGTGGGAAATGGCAAGGATAGCTCATC
CATAGAAACGATTGACGGGTTGCCGATATTAGGTCTTCGGCAATGTCAAC
AGGATTACCCGGAGAACAGAAAACGTATCAACAACGTTGACGAAAGCAAT
ACAGCTGTGGATCCGGACGGCCTTTCCGACACCAAGCACCAAGCACATGC
ATCTAACAACGATCAAACACCAAGCACATGCATCTAACAACGATCAAAAA
TGTACCGCAGTGTTGGATTCCCACGTGACAGCGACACCATCACACAAGAC
GGTCACAAGAGTCAACTCTTCCGAGTCCTTCCTAAAACGGAACACGGGTG
AACCGAAGAAGAGTAAACTCTTGTCGCCACGTGCAAAAGACAAACCTCAC
ATCAAAAATGATGGTGCGCAAGTAGGACAGAATGTACCGCAGTGTTGGAT
TCCCACGTGACAGCGACACCATCACACAAGACGGTCACAAGAGTCAACTC
TTCCGAGTCCTTCCTAAAACGGAACACGGGTGAACCGAAGAAGAGTAAAC
TCTTGTCGCCACGTGCAAAAGACAAACCTCACATCAAAAATGATGGTGCG
CAAGTAGGACAG
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