mRNA_H-paniculata_contig26783.7324.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26783.7324.1
Unique NamemRNA_H-paniculata_contig26783.7324.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 9.720e-38
Identity = 72/215 (33.49%), Postives = 118/215 (54.88%), Query Frame = 1 
Query:    7 MTTQYKGLVQTGTPNR-ENPPDNNRPIYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICIE-----------------DMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG 597
            M  +  G  +TGT  + +  P+  + I S W++ WKT+  G++   K R++ARG  Q+ G+D+  +F+   S A+IK   AVA  +G    HW++ Q+ I  KL+E+ C+                   +YGL Q+ R W    A  L E  +EQC  DPC+FR+++D  V +LI+I+VDD++++  +   ++L+  +N+ F    LGE  WY G
Sbjct:    1 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATEMGKKLAHWDVKQAYIHAKLKEETCLRFPEGYGNMSGKVVKVERALYGLKQSGREWGFEAAGALIENGYEQCRVDPCVFRKVVDGEVVSLIVIYVDDILVVADEGEREELFASLNKKFPVESLGEYTWYDG 215
[Close]
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5JJW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW4_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.800e-37
Identity = 76/198 (38.38%), Postives = 114/198 (57.58%), Query Frame = 1 
Query:    7 MTTQYKGLVQTGTPNR-ENPPDNNRPIYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICIEDMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG 597
            M  +++G + TGT +  +  P+  RP+ S W + WKT+ +G +   K RLVARG  Q+  +D   + +P  S A+IK   AVAN  G++  HW++ Q+              +YGL Q+ R W    A+TL E  FEQC  DPC FR I+D+ V  +I+I+VDD+++ GS E C+KL   +N+ F   +LGE  W+ G
Sbjct:  204 MREEFEGHLGTGTFSFVDGAPEGRRPVSSQWCFSWKTNKEGKMDKFKARLVARGFLQIPNVDSFHSASPCPSSASIKLMFAVANEKGMNLNHWDVKQAE-----------RAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCCFREIVDEVVVMIIVIYVDDILVAGSDEDCEKLLASLNKQFPTKNLGECQWFDG 390
[Close]
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5KEU9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU9_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 3.150e-34
Identity = 69/189 (36.51%), Postives = 105/189 (55.56%), Query Frame = 1 
Query:   82 IYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICI-----------------EDMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG 597
            I S  I+ WK D  G  T AK RLVARG+ Q + +D+ D +AP  + ++++  AA+A  L L   H++I Q+ +    +ED  +                 + +YGL QASR W+ LL   L    FEQC+ D C+FR +    V  L+++HVDD++ +G+KE CD+  +D+ ++     LGEL WY G
Sbjct:  147 IKSKLIFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPNVASSSVRMLAALACELDLELCHFDIDQAFVRAPFKEDTFMRLPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRSVEGGEVVLLLVVHVDDIVAVGTKERCDQFGKDLGEYVPVKSLGELKWYSG 335
[Close]
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 4.900e-34
Identity = 72/217 (33.18%), Postives = 120/217 (55.30%), Query Frame = 1 
Query:    1 KVMTTQYKGLVQTGTPNR-ENPPDNNRPIYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICIE-----------------DMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG 597
            + +  +  G  +TGT ++ E  P+  + + + W++ +KTD  G++T  K RLVARG  QV G DY  + +   ++++IK   A A   GL T H++I Q+    K++E++ +                   +YGL Q+ R W    AN L +  +EQC  DPC+FR+I+D +V ++I+I+VDD+M +GS+E  ++L   + +      LGE  WY G
Sbjct:  753 EAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDG 969
[Close]
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 5.080e-34
Identity = 72/217 (33.18%), Postives = 120/217 (55.30%), Query Frame = 1 
Query:    1 KVMTTQYKGLVQTGTPNR-ENPPDNNRPIYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICIE-----------------DMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG 597
            + +  +  G  +TGT ++ E  P+  + + + W++ +KTD  G++T  K RLVARG  QV G DY  + +   ++++IK   A A   GL T H++I Q+    K++E++ +                   +YGL Q+ R W    AN L +  +EQC  DPC+FR+I+D +V ++I+I+VDD+M +GS+E  ++L   + +      LGE  WY G
Sbjct: 1306 EAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDG 1522
[Close]
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.610e-33
Identity = 71/189 (37.57%), Postives = 106/189 (56.08%), Query Frame = 1 
Query:   82 IYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICI-----------------EDMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG 597
            I S  ++ WK D  G  T AK RLVARG+ Q + +D+ D +APT + ++++  AA+A  L L   H++I Q+ +   L E+I +                 + +YGL QASR W+ LL   L    FEQC+ D CLFR +    V  L+++HVDD+  +G+KE CD+  +D+ ++     LGEL WY G
Sbjct:  151 IKSKLLFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDIFAVGTKERCDQFGKDLGEYVPVKSLGELKWYSG 339
[Close]
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 4.420e-33
Identity = 76/211 (36.02%), Postives = 110/211 (52.13%), Query Frame = 1 
Query:   16 QYKGLVQTGTPNRENPPDNNRPIYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICIE-----------------DMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG 597
            ++ GL   GT   +        I + W+Y WK D  G    AK RLVARG  Q +G+D+ +TF+P  SI +I+  AA+A  L   + H+   Q+ ++ +L+E + I                   +YGL QASRTWH  L   +K   FE C  D C+ R I    V  +++IHVDD+  IG K  CD+   D+N++   ++LGEL WY G
Sbjct: 1391 EFFGLNAVGTFEEQR---GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDSCHFYAEQAFVQSELDEVVFIRLPPACGARSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAG 1598
[Close]
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.050e-32
Identity = 72/189 (38.10%), Postives = 103/189 (54.50%), Query Frame = 1 
Query:   82 IYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICIE-----------------DMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG 597
            I + W+Y WK D  G    AK RLVARG  Q +G+D+ +TF+P  SI +I+  AA+A  L     H++  Q+ ++ +L+E + I                   +YGL QASRTWH  L   +K   FE C  D C+ R I    V  +++IHVDD+  IG K  CD+   D+N++   ++LGEL WY G
Sbjct:  824 ISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRGLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPVSNLGELRWYAG 1012
[Close]
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5K7Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y0_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 7.090e-32
Identity = 69/186 (37.10%), Postives = 104/186 (55.91%), Query Frame = 1 
Query:   82 IYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICI-----------------EDMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNW 588
            I S  I+ WK D  G  T AK RLVARG+ Q + +D+ D +APT + ++++  AA+A  L L   H++I Q+ +   L+EDI +                 + +YGL QASR W+ LL   L    FEQC+ D C+F  +    V  L+++HVDD+  +G+KE CD+  +D+ ++     LGEL W
Sbjct: 1461 IKSKLIFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLKEDIFMRLPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFHLVEGGEVVLLLVVHVDDIFAVGTKERCDQFGKDLGEYVPVKSLGELKW 1646
[Close]
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 8.290e-31
Identity = 74/209 (35.41%), Postives = 107/209 (51.20%), Query Frame = 1 
Query:   16 QYKGLVQTGTPNRENPPDNNRPIYSMWIYKWKTDLDGVVTGAKVRLVARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIEGKLEEDICIE-----------------DMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILDKRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWY 591
            ++ GL   GT            I + W+Y WK D  G    AK RLVARG  Q +G+D+ +TF+P  SI +I+  AA+A  L      ++  Q+ ++ +L+E + I                   +YGL QASRTWH  L   +K   FE C  D C+ R I    V  +++IHVDD+  IG K  CD+   D+N++   ++LGEL WY
Sbjct: 1273 EFFGLNAVGTFEERG----TNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCPFDAQQAFVQSELDEIVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWY 1477
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26783.7324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4A4_9PHAE9.720e-3833.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJW4_9PHAE1.800e-3738.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KEU9_9PHAE3.150e-3436.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKS3_9PHAE4.900e-3433.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE5.080e-3433.18Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K307_9PHAE1.610e-3337.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAC2_9PHAE4.420e-3336.02Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JV09_9PHAE1.050e-3238.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Y0_9PHAE7.090e-3237.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBJ6_9PHAE8.290e-3135.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26783contigH-paniculata_contig26783:2099..2775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score114.8
Seed ortholog evalue4.7e-23
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size597
Cds size591
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26783.7324.1prot_H-paniculata_contig26783.7324.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26783 2099..2769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.7693079-CDS-H-paniculata_contig26783:2098..23671622929803.7693079-CDS-H-paniculata_contig26783:2098..2367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26783 2099..2367 -
1691481018.0901566-CDS-H-paniculata_contig26783:2098..23671691481018.0901566-CDS-H-paniculata_contig26783:2098..2367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26783 2099..2367 -
1622929803.7801323-CDS-H-paniculata_contig26783:2447..27691622929803.7801323-CDS-H-paniculata_contig26783:2447..2769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26783 2448..2769 -
1691481018.1008532-CDS-H-paniculata_contig26783:2447..27691691481018.1008532-CDS-H-paniculata_contig26783:2447..2769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26783 2448..2769 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.7910967-UTR-H-paniculata_contig26783:2769..27751622929803.7910967-UTR-H-paniculata_contig26783:2769..2775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26783 2770..2775 -
1691481018.1088789-UTR-H-paniculata_contig26783:2769..27751691481018.1088789-UTR-H-paniculata_contig26783:2769..2775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26783 2770..2775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26783.7324.1

>prot_H-paniculata_contig26783.7324.1 ID=prot_H-paniculata_contig26783.7324.1|Name=mRNA_H-paniculata_contig26783.7324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
MTTQYKGLVQTGTPNRENPPDNNRPIYSMWIYKWKTDLDGVVTGAKVRLV
ARGNKQVQGLDYDDTFAPTSSIATIKAGAAVANGLGLSTFHWNISQSSIE
GKLEEDICIEDMYGLNQASRTWHTLLANTLKEKRFEQCLNDPCLFRRILD
KRVETLIIIHVDDMMIIGSKEVCDKLYEDINQHFLPTHLGELNWYMG
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mRNA from alignment at H-paniculata_contig26783:2099..2775-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26783.7324.1 ID=mRNA_H-paniculata_contig26783.7324.1|Name=mRNA_H-paniculata_contig26783.7324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=677bp|location=Sequence derived from alignment at H-paniculata_contig26783:2099..2775- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGTCATGACCACACAATACAAAGGTTTAGTACAAACAGGCACTCCTAA
TCGGGAAAACCCTCCTGATAATAATAGACCAATCTATTCCATGTGGATAT
ATAAGTGGAAAACAGACCTTGACGGGGTGGTAACGGGTGCAAAGGTCAGA
CTAGTAGCCCGTGGAAACAAGCAAGTTCAAGGTCTAGACTATGATGACAC
ATTCGCACCAACATCATCAATTGCTACCATAAAAGCAGGCGCAGCAGTAG
CAAACGGGCTAGGCTTGAGCACCTTTCATTGGAATATATCGCAGTCATCT
ATAGAGGGAAAGTTGGAAGAAGACATATGTTAACGTTTGGCCGAAGGCTG
CGGAGCAGCTTCAGGCAAAGTTGTAAAACTAAATCGGTAGATATACGAAC
TTAAGCAGGCATCGAGGACATGTATGGACTTAACCAGGCGTCGAGAACAT
GGCATACTCTACTTGCCAACACGCTCAAAGAGAAAAGATTCGAGCAATGT
CTCAATGATCCGTGCTTGTTCCGCAGGATTTTAGATAAACGAGTCGAAAC
TTTGATTATCATACATGTGGACGACATGATGATAATCGGCAGCAAGGAGG
TCTGTGACAAGCTGTATGAAGACATCAATCAACATTTCCTCCCAACACAT
TTGGGAGAGCTAAACTGGTACATGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig26783:2099..2775-

>mRNA_H-paniculata_contig26783.7324.1 ID=mRNA_H-paniculata_contig26783.7324.1|Name=mRNA_H-paniculata_contig26783.7324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig26783:2099..2775- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCACACAATACAAAGGTTTAGTACAAACAGGCACTCCTAATCGGGA
AAACCCTCCTGATAATAATAGACCAATCTATTCCATGTGGATATATAAGT
GGAAAACAGACCTTGACGGGGTGGTAACGGGTGCAAAGGTCAGACTAGTA
GCCCGTGGAAACAAGCAAGTTCAAGGTCTAGACTATGATGACACATTCGC
ACCAACATCATCAATTGCTACCATAAAAGCAGGCGCAGCAGTAGCAAACG
GGCTAGGCTTGAGCACCTTTCATTGGAATATATCGCAGTCATCTATAGAG
GGAAAGTTGGAAGAAGACATATATGACCACACAATACAAAGGTTTAGTAC
AAACAGGCACTCCTAATCGGGAAAACCCTCCTGATAATAATAGACCAATC
TATTCCATGTGGATATATAAGTGGAAAACAGACCTTGACGGGGTGGTAAC
GGGTGCAAAGGTCAGACTAGTAGCCCGTGGAAACAAGCAAGTTCAAGGTC
TAGACTATGATGACACATTCGCACCAACATCATCAATTGCTACCATAAAA
GCAGGCGCAGCAGTAGCAAACGGGCTAGGCTTGAGCACCTTTCATTGGAA
TATATCGCAGTCATCTATAGAGGGAAAGTTGGAAGAAGACATATGCATCG
AGGACATGTATGGACTTAACCAGGCGTCGAGAACATGGCATACTCTACTT
GCCAACACGCTCAAAGAGAAAAGATTCGAGCAATGTCTCAATGATCCGTG
CTTGTTCCGCAGGATTTTAGATAAACGAGTCGAAACTTTGATTATCATAC
ATGTGGACGACATGATGATAATCGGCAGCAAGGAGGTCTGTGACAAGCTG
TATGAAGACATCAATCAACATTTCCTCCCAACACATTTGGGAGAGCTAAA
CTGGTACATGGGGGCATCGAGGACATGTATGGACTTAACCAGGCGTCGAG
AACATGGCATACTCTACTTGCCAACACGCTCAAAGAGAAAAGATTCGAGC
AATGTCTCAATGATCCGTGCTTGTTCCGCAGGATTTTAGATAAACGAGTC
GAAACTTTGATTATCATACATGTGGACGACATGATGATAATCGGCAGCAA
GGAGGTCTGTGACAAGCTGTATGAAGACATCAATCAACATTTCCTCCCAA
CACATTTGGGAGAGCTAAACTGGTACATGGGG
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