mRNA_H-paniculata_contig26660.7285.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26660.7285.1
Unique NamemRNA_H-paniculata_contig26660.7285.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26660.7285.1 vs. uniprot
Match: A0A6H5KD68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD68_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.720e-41
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 1 
Query:    1 RIWKRGSWLRVDSSIVGVGARFKLQRGRLSLVFMGKDSETPGVLLRVDHTKSKVYNALRRLEWQTNREVDKAVHNLMAS 237
            RIWKRGSWLRVDS+IVGVGARFKL+RGRLSLVFMGKDS TPGVLLRVDHTKSKVYNALRRLEWQTNREVDKAV+NLMAS
Sbjct: 1172 RIWKRGSWLRVDSTIVGVGARFKLKRGRLSLVFMGKDSPTPGVLLRVDHTKSKVYNALRRLEWQTNREVDKAVNNLMAS 1250
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BLAST of mRNA_H-paniculata_contig26660.7285.1 vs. uniprot
Match: D8LIX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIX3_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.030e-19
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 RIWKRGSWLRVDSSIVGVGARFKLQRGRLSLVFMGKDSETPGVLLRVDHTKSKVYNALRRLEWQTNREV 207
            RIWK+GSWLR+DS+I G   R K QRG++SL+F+G DS  PG L+++DH K K+YN LRRLE  T  EV
Sbjct:  893 RIWKKGSWLRMDSTITGYTKRLKTQRGKVSLLFLGNDSPAPGTLIKLDHGKRKIYNVLRRLESPTPSEV 961
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BLAST of mRNA_H-paniculata_contig26660.7285.1 vs. uniprot
Match: A0A6H5L593_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L593_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.050e-19
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 RIWKRGSWLRVDSSIVGVGARFKLQRGRLSLVFMGKDSETPGVLLRVDHTKSKVYNALRRLEWQTNREV 207
            RIWK+GSWLR+DS+I G   R K QRG++SL+F+G DS  PG L+++DH K K+YN LRRLE  T  EV
Sbjct: 1139 RIWKKGSWLRMDSTITGYTKRLKTQRGKVSLLFLGNDSPAPGTLIKLDHGKRKIYNVLRRLESPTPSEV 1207
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BLAST of mRNA_H-paniculata_contig26660.7285.1 vs. uniprot
Match: D7FKT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT2_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.720e-19
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:  100 MGKDSETPGVLLRVDHTKSKVYNALRRLEWQTNREVDKAVHNLMAS 237
            MGKDS TPGVLLR+DHTKSKVYNALRRLEWQTNREVDKAV+NLMAS
Sbjct:    1 MGKDSPTPGVLLRIDHTKSKVYNALRRLEWQTNREVDKAVNNLMAS 46
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BLAST of mRNA_H-paniculata_contig26660.7285.1 vs. uniprot
Match: A0A812Y4C2_SYMMI (Ankrd13a protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y4C2_SYMMI)

HSP 1 Score: 50.1 bits (118), Expect = 3.230e-5
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 RIWKRGSWLRVDSSIVGVGARFKLQRGRLSLVFMGK 108
            RIWK+GSWLR+DS+I G    F  +RG+LS +F G+
Sbjct:   15 RIWKKGSWLRLDSTIAGFNRNFSAKRGQLSTIFRGR 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26660.7285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KD68_9PHAE2.720e-4194.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIX3_ECTSI2.030e-1959.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L593_9PHAE2.050e-1959.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKT2_ECTSI2.720e-1993.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A812Y4C2_SYMMI3.230e-555.56Ankrd13a protein n=1 Tax=Symbiodinium microadriati... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26660contigH-paniculata_contig26660:128..364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.7e-16
Seed eggNOG ortholog2880.D8LIX3
KEGG koko:K21437
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006621,GO:0008104,GO:0008150,GO:0009889,GO:0009987,GO:0010556,GO:0010869,GO:0010941,GO:0012505,GO:0019222,GO:0031323,GO:0032507,GO:0033036,GO:0033365,GO:0034613,GO:0035437,GO:0042981,GO:0043067,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045185,GO:0048471,GO:0050789,GO:0050794,GO:0051179,GO:0051235,GO:0051641,GO:0051651,GO:0060255,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0072595,GO:2000209
EggNOG free text desc.protein retention in ER lumen
EggNOG OGsKOG0522@1,KOG0522@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929799.6814454-CDS-H-paniculata_contig26660:127..3641622929799.6814454-CDS-H-paniculata_contig26660:127..364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26660 128..364 +
1691481016.0928743-CDS-H-paniculata_contig26660:127..3641691481016.0928743-CDS-H-paniculata_contig26660:127..364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26660 128..364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26660.7285.1prot_H-paniculata_contig26660.7285.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26660 128..364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26660.7285.1

>prot_H-paniculata_contig26660.7285.1 ID=prot_H-paniculata_contig26660.7285.1|Name=mRNA_H-paniculata_contig26660.7285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
RIWKRGSWLRVDSSIVGVGARFKLQRGRLSLVFMGKDSETPGVLLRVDHT
KSKVYNALRRLEWQTNREVDKAVHNLMAS
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mRNA from alignment at H-paniculata_contig26660:128..364+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26660.7285.1 ID=mRNA_H-paniculata_contig26660.7285.1|Name=mRNA_H-paniculata_contig26660.7285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at H-paniculata_contig26660:128..364+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAATCTGGAAACGAGGATCGTGGCTGCGAGTAGACAGCTCTATCGTGGG
GGTGGGAGCGAGGTTCAAGCTCCAGCGGGGACGGCTGAGCCTGGTGTTCA
TGGGGAAGGACTCGGAGACACCGGGAGTCTTGCTCCGAGTGGATCACACC
AAGTCCAAGGTTTATAACGCGTTGCGACGACTGGAGTGGCAGACTAACAG
AGAGGTGGACAAGGCCGTTCATAACCTCATGGCTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig26660:128..364+

>mRNA_H-paniculata_contig26660.7285.1 ID=mRNA_H-paniculata_contig26660.7285.1|Name=mRNA_H-paniculata_contig26660.7285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig26660:128..364+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAATCTGGAAACGAGGATCGTGGCTGCGAGTAGACAGCTCTATCGTGGG
GGTGGGAGCGAGGTTCAAGCTCCAGCGGGGACGGCTGAGCCTGGTGTTCA
TGGGGAAGGACTCGGAGACACCGGGAGTCTTGCTCCGAGTGGATCACACC
AAGTCCAAGGTTTATAACGCGTTGCGACGACTGGAGTGGCAGACTAACAG
AGAGGTGGACAAGGCCGTTCATAACCTCATGGCTTCCAGAATCTGGAAAC
GAGGATCGTGGCTGCGAGTAGACAGCTCTATCGTGGGGGTGGGAGCGAGG
TTCAAGCTCCAGCGGGGACGGCTGAGCCTGGTGTTCATGGGGAAGGACTC
GGAGACACCGGGAGTCTTGCTCCGAGTGGATCACACCAAGTCCAAGGTTT
ATAACGCGTTGCGACGACTGGAGTGGCAGACTAACAGAGAGGTGGACAAG
GCCGTTCATAACCTCATGGCTTCC
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