mRNA_H-paniculata_contig26659.7283.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26659.7283.1
Unique NamemRNA_H-paniculata_contig26659.7283.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26659.7283.1 vs. uniprot
Match: D7FP85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP85_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.400e-21
Identity = 45/47 (95.74%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:   25 QVAKELNADMILVANGGLGSAYDELELNRGICEKYGITVRGVVLNKV 165
            QVAK LNADMILVANGGLGSAYDELELNRGICEKYGI VRGVVLNKV
Sbjct:   75 QVAKALNADMILVANGGLGSAYDELELNRGICEKYGIKVRGVVLNKV 121
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BLAST of mRNA_H-paniculata_contig26659.7283.1 vs. uniprot
Match: A0A836CAU9_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.030e-15
Identity = 35/47 (74.47%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   25 QVAKELNADMILVANGGLGSAYDELELNRGICEKYGITVRGVVLNKV 165
            QVAK LNA+MILVANGGLGSA+DELELNR +C++YG+ + GV+LNKV
Sbjct:  135 QVAKTLNAEMILVANGGLGSAFDELELNRCMCKEYGVKISGVILNKV 181
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BLAST of mRNA_H-paniculata_contig26659.7283.1 vs. uniprot
Match: A0A024TU32_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024TU32_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.000e-13
Identity = 30/47 (63.83%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   25 QVAKELNADMILVANGGLGSAYDELELNRGICEKYGITVRGVVLNKV 165
            +VA EL  DM+L+ANGG+GSA+D+L LNR +C++YG+ VRGV+LNKV
Sbjct:  138 RVAAELGVDMVLIANGGIGSAFDDLSLNRALCQQYGVRVRGVILNKV 184
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BLAST of mRNA_H-paniculata_contig26659.7283.1 vs. uniprot
Match: A0A7S2SU09_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU09_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.060e-13
Identity = 32/47 (68.09%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   25 QVAKELNADMILVANGGLGSAYDELELNRGICEKYGITVRGVVLNKV 165
            +VA+ L ADMILVANGGLGSA+DELELN  +C++YG+ +RG++LNKV
Sbjct:  152 RVAQLLGADMILVANGGLGSAFDELELNHTMCKEYGVNIRGIILNKV 198
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BLAST of mRNA_H-paniculata_contig26659.7283.1 vs. uniprot
Match: A0A485KB28_9STRA (Aste57867_2095 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KB28_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.290e-13
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   25 QVAKELNADMILVANGGLGSAYDELELNRGICEKYGITVRGVVLNKV 165
            +VA EL  DM+L+ANGG+GSA+D+L LNR +C+ YG+ VRGV+LNKV
Sbjct:  149 RVAAELGVDMLLIANGGIGSAFDDLSLNRAMCKSYGVRVRGVILNKV 195
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BLAST of mRNA_H-paniculata_contig26659.7283.1 vs. uniprot
Match: A0A7S1UCT6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCT6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 9.970e-13
Identity = 32/47 (68.09%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   25 QVAKELNADMILVANGGLGSAYDELELNRGICEKYGITVRGVVLNKV 165
            +VA  L A+MIL+ANGGLGSA+DELELNR +C++YG+ +RGVV+NKV
Sbjct:  141 RVAGLLGAEMILIANGGLGSAFDELELNRCMCKEYGVKIRGVVINKV 187
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BLAST of mRNA_H-paniculata_contig26659.7283.1 vs. uniprot
Match: A0A2D4CEQ2_PYTIN (DRTGG domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEQ2_PYTIN)

HSP 1 Score: 68.9 bits (167), Expect = 2.520e-12
Identity = 29/47 (61.70%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   25 QVAKELNADMILVANGGLGSAYDELELNRGICEKYGITVRGVVLNKV 165
            ++A EL  DMIL+ANGG+GSA+D+L LN  +C++YG+ VRGV+LNKV
Sbjct:  137 RIAAELGVDMILIANGGIGSAFDDLALNHSMCKEYGVKVRGVILNKV 183
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BLAST of mRNA_H-paniculata_contig26659.7283.1 vs. uniprot
Match: A0A7R9U109_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U109_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.630e-12
Identity = 31/47 (65.96%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   25 QVAKELNADMILVANGGLGSAYDELELNRGICEKYGITVRGVVLNKV 165
            +VA  L A+MIL+ANGGLGSA+DELELNR +C++YG+ + GVV+NKV
Sbjct:  152 KVASMLGAEMILIANGGLGSAFDELELNRCMCKEYGVKISGVVINKV 198
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BLAST of mRNA_H-paniculata_contig26659.7283.1 vs. uniprot
Match: A0A6G0WNF0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNF0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.740e-12
Identity = 27/47 (57.45%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   25 QVAKELNADMILVANGGLGSAYDELELNRGICEKYGITVRGVVLNKV 165
            +VA +L  DM+L+ANGG+GS +D+L LNR +C++YG+ +RGV+LNKV
Sbjct:  135 RVAADLGVDMVLIANGGIGSTFDDLSLNRAMCKEYGVRIRGVILNKV 181
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BLAST of mRNA_H-paniculata_contig26659.7283.1 vs. uniprot
Match: K3W676_GLOUD (DRTGG domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3W676_GLOUD)

HSP 1 Score: 68.2 bits (165), Expect = 4.790e-12
Identity = 29/47 (61.70%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   25 QVAKELNADMILVANGGLGSAYDELELNRGICEKYGITVRGVVLNKV 165
            +VA EL  DM+L+ANGG+GSA+D+L LN  +C++YG+ VRGV+LNKV
Sbjct:  140 RVAAELGIDMVLIANGGIGSAFDDLALNYALCKQYGVKVRGVILNKV 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26659.7283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP85_ECTSI2.400e-2195.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CAU9_9STRA8.030e-1574.47AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A024TU32_9STRA2.000e-1363.83Uncharacterized protein n=6 Tax=Aphanomyces TaxID=... [more]
A0A7S2SU09_9STRA2.060e-1368.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A485KB28_9STRA7.290e-1363.83Aste57867_2095 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S1UCT6_9STRA9.970e-1368.09Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A2D4CEQ2_PYTIN2.520e-1261.70DRTGG domain-containing protein n=2 Tax=Pythium in... [more]
A0A7R9U109_9STRA2.630e-1265.96Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6G0WNF0_9STRA4.740e-1257.45Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
K3W676_GLOUD4.790e-1261.70DRTGG domain-containing protein n=2 Tax=Pythiaceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26659contigH-paniculata_contig26659:640..804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue2.6e-16
Seed eggNOG ortholog2880.D7FP85
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.AAA domain
EggNOG OGs2RN67@2759,COG0857@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929799.4367433-CDS-H-paniculata_contig26659:639..8041622929799.4367433-CDS-H-paniculata_contig26659:639..804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26659 640..804 -
1691481016.0135188-CDS-H-paniculata_contig26659:639..8041691481016.0135188-CDS-H-paniculata_contig26659:639..804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26659 640..804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26659.7283.1prot_H-paniculata_contig26659.7283.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26659 640..804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26659.7283.1

>prot_H-paniculata_contig26659.7283.1 ID=prot_H-paniculata_contig26659.7283.1|Name=mRNA_H-paniculata_contig26659.7283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MYVSRDIWQVAKELNADMILVANGGLGSAYDELELNRGICEKYGITVRGV
VLNKV
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mRNA from alignment at H-paniculata_contig26659:640..804-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26659.7283.1 ID=mRNA_H-paniculata_contig26659.7283.1|Name=mRNA_H-paniculata_contig26659.7283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig26659:640..804- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGTGTCCCGTGACATTTGGCAGGTAGCAAAAGAGCTGAACGCAGA
CATGATCTTGGTTGCTAACGGAGGATTGGGTTCGGCGTACGACGAACTGG
AACTCAATCGTGGAATATGCGAAAAATACGGTATTACCGTTCGCGGTGTG
GTCCTCAATAAGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig26659:640..804-

>mRNA_H-paniculata_contig26659.7283.1 ID=mRNA_H-paniculata_contig26659.7283.1|Name=mRNA_H-paniculata_contig26659.7283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig26659:640..804- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGTGTCCCGTGACATTTGGCAGGTAGCAAAAGAGCTGAACGCAGA
CATGATCTTGGTTGCTAACGGAGGATTGGGTTCGGCGTACGACGAACTGG
AACTCAATCGTGGAATATGCGAAAAATACGGTATTACCGTTCGCGGTGTG
GTCCTCAATAAGGTCATGTATGTGTCCCGTGACATTTGGCAGGTAGCAAA
AGAGCTGAACGCAGACATGATCTTGGTTGCTAACGGAGGATTGGGTTCGG
CGTACGACGAACTGGAACTCAATCGTGGAATATGCGAAAAATACGGTATT
ACCGTTCGCGGTGTGGTCCTCAATAAGGTC
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