mRNA_H-paniculata_contig26635.7277.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26635.7277.1
Unique NamemRNA_H-paniculata_contig26635.7277.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26635.7277.1 vs. uniprot
Match: A0A0N4TUI9_BRUPA (Uncharacterized protein n=3 Tax=Brugia TaxID=6278 RepID=A0A0N4TUI9_BRUPA)

HSP 1 Score: 54.7 bits (130), Expect = 2.960e-9
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 RPYHVDCTTSRSLCEVKWRWAWLVLRWGTTWEALVL 108
            RPYHV+ TTSR +C+VK RWAWLVL   T WE+ VL
Sbjct:    2 RPYHVESTTSRPICQVKQRWAWLVLGSETAWESQVL 37
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BLAST of mRNA_H-paniculata_contig26635.7277.1 vs. uniprot
Match: A0A0N4TUH7_BRUPA (Uncharacterized protein n=1 Tax=Brugia pahangi TaxID=6280 RepID=A0A0N4TUH7_BRUPA)

HSP 1 Score: 54.7 bits (130), Expect = 3.310e-9
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 RPYHVDCTTSRSLCEVKWRWAWLVLRWGTTWEALVL 108
            RPYHV+ TTSR +C+VK RWAWLVL   T WE+ VL
Sbjct:    8 RPYHVESTTSRPICQVKQRWAWLVLGSETAWESQVL 43
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BLAST of mRNA_H-paniculata_contig26635.7277.1 vs. uniprot
Match: A8NMS7_BRUMA (Uncharacterized protein n=3 Tax=Brugia TaxID=6278 RepID=A8NMS7_BRUMA)

HSP 1 Score: 54.7 bits (130), Expect = 3.520e-9
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 RPYHVDCTTSRSLCEVKWRWAWLVLRWGTTWEALVL 108
            RPYHV+ TTSR +C+VK RWAWLVL   T WE+ VL
Sbjct:   11 RPYHVESTTSRPICQVKQRWAWLVLGSETAWESQVL 46
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BLAST of mRNA_H-paniculata_contig26635.7277.1 vs. uniprot
Match: A8PCV4_BRUMA (Uncharacterized protein n=2 Tax=Brugia malayi TaxID=6279 RepID=A8PCV4_BRUMA)

HSP 1 Score: 53.1 bits (126), Expect = 2.720e-8
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 RPYHVDCTTSRSLCEVKWRWAWLVLRWGTTWEALV 105
            RPYHV+ TTSR +C+VK RWAWLVL   T WE+ V
Sbjct:   11 RPYHVESTTSRPICQVKQRWAWLVLGSETAWESQV 45
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BLAST of mRNA_H-paniculata_contig26635.7277.1 vs. uniprot
Match: A0A3P7FTV6_WUCBA (Uncharacterized protein n=1 Tax=Wuchereria bancrofti TaxID=6293 RepID=A0A3P7FTV6_WUCBA)

HSP 1 Score: 52.4 bits (124), Expect = 3.610e-8
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    1 RPYHVDCTTSRSLCEVKWRWAWLVLRWGTTWEA 99
            RPYHV+ TTSR +C+VK RWAWLVL   T WE+
Sbjct:   18 RPYHVESTTSRPICQVKQRWAWLVLGSETAWES 50
[Close]
BLAST of mRNA_H-paniculata_contig26635.7277.1 vs. uniprot
Match: A0A0N4T1G1_BRUPA (Uncharacterized protein n=1 Tax=Brugia pahangi TaxID=6280 RepID=A0A0N4T1G1_BRUPA)

HSP 1 Score: 52.4 bits (124), Expect = 5.880e-8
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    1 RPYHVDCTTSRSLCEVKWRWAWLVLRWGTTWEA 99
            RPYHV+ TTSR +C+VK RWAWLVL   T WE+
Sbjct:   13 RPYHVESTTSRPICQVKQRWAWLVLGSETAWES 45
[Close]
BLAST of mRNA_H-paniculata_contig26635.7277.1 vs. uniprot
Match: A0A8J2Q496_9BILA (Hypothetical protein n=1 Tax=Cercopithifilaria johnstoni TaxID=2874296 RepID=A0A8J2Q496_9BILA)

HSP 1 Score: 53.9 bits (128), Expect = 2.360e-7
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 RPYHVDCTTSRSLCEVKWRWAWLVLRWGTTWEALVL 108
            RPYHV+ TTSR +C+VK RWAWLVL   T WE+ V+
Sbjct:   15 RPYHVESTTSRPICQVKQRWAWLVLGSETAWESQVI 50
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BLAST of mRNA_H-paniculata_contig26635.7277.1 vs. uniprot
Match: A0A044RCB4_ONCVO (Uncharacterized protein n=1 Tax=Onchocerca volvulus TaxID=6282 RepID=A0A044RCB4_ONCVO)

HSP 1 Score: 47.8 bits (112), Expect = 1.790e-6
Identity = 19/25 (76.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:    1 RPYHVDCTTSRSLCEVKWRWAWLVL 75
            RPYHV+ TTSR++C+VK RWAWLVL
Sbjct:   12 RPYHVESTTSRAVCQVKQRWAWLVL 36
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BLAST of mRNA_H-paniculata_contig26635.7277.1 vs. uniprot
Match: A0A183UVC8_TOXCA (Uncharacterized protein n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183UVC8_TOXCA)

HSP 1 Score: 47.8 bits (112), Expect = 6.420e-6
Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 RPYHVDCTTSRSLCEVKWRWAWLVLRWGTTWEALVL 108
            RPYHV+ TTSR +C VK R AWLVL   T WE+ VL
Sbjct:   65 RPYHVENTTSRPICHVKQRRAWLVLGSETAWESQVL 100
[Close]
BLAST of mRNA_H-paniculata_contig26635.7277.1 vs. uniprot
Match: A0A0N5CTF6_THECL (Uncharacterized protein n=1 Tax=Thelazia callipaeda TaxID=103827 RepID=A0A0N5CTF6_THECL)

HSP 1 Score: 48.1 bits (113), Expect = 1.260e-5
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    1 RPYHVDCTTSRSLCEVKWRWAWLVLRWGTTWEA 99
            R YHV+ TTSR  C+VK RWAWLVL   T WE+
Sbjct:  109 RSYHVESTTSRPTCQVKQRWAWLVLGSETAWES 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26635.7277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A0N4TUI9_BRUPA2.960e-966.67Uncharacterized protein n=3 Tax=Brugia TaxID=6278 ... [more]
A0A0N4TUH7_BRUPA3.310e-966.67Uncharacterized protein n=1 Tax=Brugia pahangi Tax... [more]
A8NMS7_BRUMA3.520e-966.67Uncharacterized protein n=3 Tax=Brugia TaxID=6278 ... [more]
A8PCV4_BRUMA2.720e-865.71Uncharacterized protein n=2 Tax=Brugia malayi TaxI... [more]
A0A3P7FTV6_WUCBA3.610e-866.67Uncharacterized protein n=1 Tax=Wuchereria bancrof... [more]
A0A0N4T1G1_BRUPA5.880e-866.67Uncharacterized protein n=1 Tax=Brugia pahangi Tax... [more]
A0A8J2Q496_9BILA2.360e-763.89Hypothetical protein n=1 Tax=Cercopithifilaria joh... [more]
A0A044RCB4_ONCVO1.790e-676.00Uncharacterized protein n=1 Tax=Onchocerca volvulu... [more]
A0A183UVC8_TOXCA6.420e-663.89Uncharacterized protein n=1 Tax=Toxocara canis Tax... [more]
A0A0N5CTF6_THECL1.260e-563.64Uncharacterized protein n=1 Tax=Thelazia callipaed... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26635contigH-paniculata_contig26635:1067..1174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929798.9695532-CDS-H-paniculata_contig26635:1066..11741622929798.9695532-CDS-H-paniculata_contig26635:1066..1174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26635 1067..1174 +
1691481015.8417907-CDS-H-paniculata_contig26635:1066..11741691481015.8417907-CDS-H-paniculata_contig26635:1066..1174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26635 1067..1174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26635.7277.1prot_H-paniculata_contig26635.7277.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26635 1067..1174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26635.7277.1

>prot_H-paniculata_contig26635.7277.1 ID=prot_H-paniculata_contig26635.7277.1|Name=mRNA_H-paniculata_contig26635.7277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=36bp
RPYHVDCTTSRSLCEVKWRWAWLVLRWGTTWEALVL
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mRNA from alignment at H-paniculata_contig26635:1067..1174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26635.7277.1 ID=mRNA_H-paniculata_contig26635.7277.1|Name=mRNA_H-paniculata_contig26635.7277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=108bp|location=Sequence derived from alignment at H-paniculata_contig26635:1067..1174+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCCATACCACGTCGACTGCACCACATCCCGCTCGCTCTGTGAAGTCAA
GTGGCGTTGGGCCTGGTTAGTACTACGGTGGGGGACCACGTGGGAAGCCC
TAGTGCTA
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Coding sequence (CDS) from alignment at H-paniculata_contig26635:1067..1174+

>mRNA_H-paniculata_contig26635.7277.1 ID=mRNA_H-paniculata_contig26635.7277.1|Name=mRNA_H-paniculata_contig26635.7277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at H-paniculata_contig26635:1067..1174+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCCATACCACGTCGACTGCACCACATCCCGCTCGCTCTGTGAAGTCAA
GTGGCGTTGGGCCTGGTTAGTACTACGGTGGGGGACCACGTGGGAAGCCC
TAGTGCTACGTCCATACCACGTCGACTGCACCACATCCCGCTCGCTCTGT
GAAGTCAAGTGGCGTTGGGCCTGGTTAGTACTACGGTGGGGGACCACGTG
GGAAGCCCTAGTGCTA
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