mRNA_H-paniculata_contig26614.7271.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26614.7271.1
Unique NamemRNA_H-paniculata_contig26614.7271.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig26614.7271.1 vs. uniprot
Match: D7FPD4_ECTSI (Protein phosphatase 2A regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD4_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.000e-38
Identity = 67/78 (85.90%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 FYDSEGLGYLREQDLENYIYDHIPSMPALHAIHDNFYPFYVFTAVRRFMFFLDPRRTGKISIDSLVRSRIMQELLELR 234
            FYDSEGLG+LREQDLENY+YDHIP+MPAL AIHDNFYPFYVFTAVRRFMFFLDP+RTGKISID+LVRSR+M+E L++R
Sbjct:  318 FYDSEGLGFLREQDLENYVYDHIPTMPALRAIHDNFYPFYVFTAVRRFMFFLDPKRTGKISIDTLVRSRVMEEFLQVR 395
[Close]
BLAST of mRNA_H-paniculata_contig26614.7271.1 vs. uniprot
Match: A0A6H5KJ60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ60_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.370e-31
Identity = 68/125 (54.40%), Postives = 77/125 (61.60%), Query Frame = 1 
Query:    1 FYDSEGLGYLREQDLENYIYDHIPSMPALHAIHDNFYPFYVFTAVRRFMFFLDPRRTG----------------------------------------------KISIDSLVRSRIMQELLELRM 237
            FYDSEGLG+LREQDLENY+YDHIP+MPAL AIHDNFYPFYVFTAVRRFMFFLDP+RTG                                              KISID+LVRSR+M+E L++RM
Sbjct:  193 FYDSEGLGFLREQDLENYVYDHIPTMPALRAIHDNFYPFYVFTAVRRFMFFLDPKRTGVSRAWACSPIDSDLADFADMDMLERRACVPVFVSKERRISRKERAGKISIDTLVRSRVMEEFLQVRM 317
[Close]
BLAST of mRNA_H-paniculata_contig26614.7271.1 vs. uniprot
Match: A0A835YRV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRV6_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.370e-26
Identity = 52/79 (65.82%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:    1 FYDSEGLGYLREQDLENYIYDHIPSMPALHAIHDNFYPFYVFTAVRRFMFFLDPRRTGKISIDSLVRSRIMQELLELRM 237
            +YD+EG G LRE D+ENY+YD IP++PAL A+ ++F+PFYVFTAVRRFMFFLDPRR G+I +  L+RSR+M +LLEL M
Sbjct:  359 YYDAEGRGALRETDVENYVYDLIPTVPALRAVPESFHPFYVFTAVRRFMFFLDPRRMGRIPVARLIRSRVMDDLLELGM 437
[Close]
BLAST of mRNA_H-paniculata_contig26614.7271.1 vs. uniprot
Match: A0A7S3W7H1_9SPIT (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3W7H1_9SPIT)

HSP 1 Score: 99.8 bits (247), Expect = 3.610e-25
Identity = 47/77 (61.04%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    4 YDSEGLGYLREQDLENYIYDHIPSMPALHAIHDNFYPFYVFTAVRRFMFFLDPRRTGKISIDSLVRSRIMQELLELR 234
            YD+ G GYLRE+D+EN+IY+ IP++P L+ + + FYPFYVFTAVR+F FFLDP+RTG++SI  L+ S I+ EL ELR
Sbjct:    6 YDAFGCGYLREKDMENFIYELIPTLPQLNLLQEAFYPFYVFTAVRKFFFFLDPKRTGRVSIRDLLSSPIIIELYELR 82
[Close]
BLAST of mRNA_H-paniculata_contig26614.7271.1 vs. uniprot
Match: A0A7R9UCK0_9STRA (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCK0_9STRA)

HSP 1 Score: 104 bits (260), Expect = 8.890e-25
Identity = 48/77 (62.34%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    1 FYDSEGLGYLREQDLENYIYDHIPSMPALHAIHDNFYPFYVFTAVRRFMFFLDPRRTGKISIDSLVRSRIMQELLEL 231
            +YD+EG GYLREQDLENY+YD I ++P+L ++ D+F PFYV+TAVRRF+FFLDPRRTG+IS+  L  S +M+E  E+
Sbjct:  137 YYDAEGKGYLREQDLENYLYDFIDNIPSLASMIDSFLPFYVYTAVRRFVFFLDPRRTGRISVAKLANSAVMEEFYEI 213
[Close]
BLAST of mRNA_H-paniculata_contig26614.7271.1 vs. uniprot
Match: A0A7S3W6R9_9SPIT (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3W6R9_9SPIT)

HSP 1 Score: 98.6 bits (244), Expect = 6.170e-24
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:    4 YDSEGLGYLREQDLENYIYDHIPSMPALHAIHDNFYPFYVFTAVRRFMFFLDPRRTGKISIDSLVRSRIMQELLELR 234
            YD  G GYLRE+D+EN+IY+ IP++P L+ + + FYPFYVFTAVR+F FFLDP+RTG++SI  L+ S I+ EL ELR
Sbjct:   77 YDVLGCGYLREKDMENFIYELIPTLPQLNLLQEAFYPFYVFTAVRKFFFFLDPKRTGRVSIRDLLSSPIIIELYELR 153
[Close]
BLAST of mRNA_H-paniculata_contig26614.7271.1 vs. uniprot
Match: A0A813INV7_POLGL (Calmodulin (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813INV7_POLGL)

HSP 1 Score: 99.4 bits (246), Expect = 2.500e-23
Identity = 45/78 (57.69%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:    1 FYDSEGLGYLREQDLENYIYDHIPSMPALHAIHDNFYPFYVFTAVRRFMFFLDPRRTGKISIDSLVRSRIMQELLELR 234
            +YD+ G GYLRE+D+EN+I++ IP++P L  + + FYPFYVFTAVR+F FFLDP+RTG++ I  L+ S I+ EL ELR
Sbjct:   43 YYDALGCGYLREKDMENFIFEMIPTLPQLSTLQEEFYPFYVFTAVRKFFFFLDPKRTGRVHIRDLLSSPILPELYELR 120
[Close]
BLAST of mRNA_H-paniculata_contig26614.7271.1 vs. uniprot
Match: A0A7S4R799_9DINO (Calmodulin n=3 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4R799_9DINO)

HSP 1 Score: 100 bits (249), Expect = 4.040e-23
Identity = 46/78 (58.97%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:    1 FYDSEGLGYLREQDLENYIYDHIPSMPALHAIHDNFYPFYVFTAVRRFMFFLDPRRTGKISIDSLVRSRIMQELLELR 234
            +YD+ G GYLRE+D+EN+I++ IP++P L ++ + FYPFYVFTAVR+F FFLDP+RTGK+ I  L+ S I+ EL ELR
Sbjct:  188 YYDALGCGYLREKDMENFIFELIPTLPQLDSLQEGFYPFYVFTAVRKFFFFLDPKRTGKLRIRDLLSSSILPELYELR 265
[Close]
BLAST of mRNA_H-paniculata_contig26614.7271.1 vs. uniprot
Match: A0A7S1UEY0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEY0_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.460e-23
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:    1 FYDSEGLGYLREQDLENYIYDHIPSMPALHAIHDNFYPFYVFTAVRRFMFFLDPRRTGKISIDSLVRSRIMQELLEL 231
            +YDSEG  +LREQDLENY+YD I ++P+L  + ++F PFYV+TAVRRFMFFLDPRRTG+IS+  L  S +M+E  E+
Sbjct:  348 YYDSEGRDFLREQDLENYLYDFIDNIPSLSTMIESFLPFYVYTAVRRFMFFLDPRRTGQISVKRLASSAVMEEFYEI 424
[Close]
BLAST of mRNA_H-paniculata_contig26614.7271.1 vs. uniprot
Match: A0A813A215_SYMMI (Calmodulin (Fragment) n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813A215_SYMMI)

HSP 1 Score: 99.4 bits (246), Expect = 4.470e-23
Identity = 44/78 (56.41%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:    1 FYDSEGLGYLREQDLENYIYDHIPSMPALHAIHDNFYPFYVFTAVRRFMFFLDPRRTGKISIDSLVRSRIMQELLELR 234
            +YD+ G G+LRE+D+EN+I++ IP++P L+++ + FYPFYVFTAVR+F FFLDP+RTG++ I  L+ S+I+ EL ELR
Sbjct:   83 YYDALGCGFLREKDMENFIFEMIPTLPQLNSLTEEFYPFYVFTAVRKFFFFLDPKRTGRVRIRDLLSSQILPELYELR 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26614.7271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPD4_ECTSI2.000e-3885.90Protein phosphatase 2A regulatory subunit n=1 Tax=... [more]
A0A6H5KJ60_9PHAE3.370e-3154.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YRV6_9STRA1.370e-2665.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3W7H1_9SPIT3.610e-2561.04Serine/threonine-protein phosphatase 2A regulatory... [more]
A0A7R9UCK0_9STRA8.890e-2562.34Serine/threonine-protein phosphatase 2A regulatory... [more]
A0A7S3W6R9_9SPIT6.170e-2461.04Serine/threonine-protein phosphatase 2A regulatory... [more]
A0A813INV7_POLGL2.500e-2357.69Calmodulin (Fragment) n=1 Tax=Polarella glacialis ... [more]
A0A7S4R799_9DINO4.040e-2358.97Calmodulin n=3 Tax=Alexandrium monilatum TaxID=311... [more]
A0A7S1UEY0_9STRA4.460e-2361.04Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A813A215_SYMMI4.470e-2356.41Calmodulin (Fragment) n=2 Tax=Symbiodinium TaxID=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26614contigH-paniculata_contig26614:1744..2700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue9.9e-33
Seed eggNOG ortholog2880.D7FPD4
Preferred namePPP2R3C
KEGG koko:K11583
KEGG Pathwayko03015,ko04071,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04151,map04152,map04261,map04728,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000902,GO:0000910,GO:0000911,GO:0000913,GO:0001776,GO:0001782,GO:0001932,GO:0001934,GO:0002260,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002759,GO:0002831,GO:0002920,GO:0003254,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007275,GO:0008104,GO:0008150,GO:0009524,GO:0009653,GO:0009790,GO:0009792,GO:0009826,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0012505,GO:0015630,GO:0016043,GO:0016049,GO:0019220,GO:0019222,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0022607,GO:0030865,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032101,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032506,GO:0032989,GO:0033036,GO:0033365,GO:0033674,GO:0034613,GO:0040007,GO:0042325,GO:0042327,GO:0042391,GO:0042592,GO:0043029,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043549,GO:0043900,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045577,GO:0045579,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045859,GO:0045860,GO:0045937,GO:0048285,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048536,GO:0048583,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050776,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0051094,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051225,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051249,GO:0051251,GO:0051301,GO:0051338,GO:0051347,GO:0051641,GO:0051721,GO:0051881,GO:0051900,GO:0060255,GO:0060560,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070925,GO:0071840,GO:0080090,GO:0090307,GO:0140014,GO:1902105,GO:1902107,GO:1902410,GO:1902850,GO:1903047,GO:1903706,GO:1903708,GO:2000026
EggNOG free text desc.positive regulation of B cell differentiation
EggNOG OGsKOG2562@1,KOG2562@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929798.4529903-CDS-H-paniculata_contig26614:1743..19151622929798.4529903-CDS-H-paniculata_contig26614:1743..1915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26614 1744..1915 +
1691481015.6159825-CDS-H-paniculata_contig26614:1743..19151691481015.6159825-CDS-H-paniculata_contig26614:1743..1915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26614 1744..1915 +
1622929798.4709034-CDS-H-paniculata_contig26614:2635..27001622929798.4709034-CDS-H-paniculata_contig26614:2635..2700Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26614 2636..2700 +
1691481015.6287053-CDS-H-paniculata_contig26614:2635..27001691481015.6287053-CDS-H-paniculata_contig26614:2635..2700Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26614 2636..2700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26614.7271.1prot_H-paniculata_contig26614.7271.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26614 1744..2700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26614.7271.1

>prot_H-paniculata_contig26614.7271.1 ID=prot_H-paniculata_contig26614.7271.1|Name=mRNA_H-paniculata_contig26614.7271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
FYDSEGLGYLREQDLENYIYDHIPSMPALHAIHDNFYPFYVFTAVRRFMF
FLDPRRTGKISIDSLVRSRIMQELLELRM
back to top

mRNA from alignment at H-paniculata_contig26614:1744..2700+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26614.7271.1 ID=mRNA_H-paniculata_contig26614.7271.1|Name=mRNA_H-paniculata_contig26614.7271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=957bp|location=Sequence derived from alignment at H-paniculata_contig26614:1744..2700+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTACGACTCCGAAGGGCTGGGCTACCTGCGGGAGCAAGACCTGGAGAA
CTACATCTATGATCACATCCCTTCGATGCCGGCACTGCACGCCATCCACG
ACAACTTCTACCCGTTCTATGTGTTCACCGCGGTGCGACGGTTTATGTTC
TTCCTCGACCCAAGGCGTACAGGTTCGCGCGGCCTACGTTTTCCGTGTGT
CAGTTATTGTGTTCCGTGTGTGTGTGTCTATGTGTATATATATATATTGT
CCCGTGTGCCTGTCTGTCTGTGTCAGTCTCTGTCTGTCGGAGTCTGCACA
GGTCTATTTCATTTGATATGTCGCATAGAGTGCTCTGAGAACACCCCGGG
GCAAACTTATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAA
AGAGAGATTTGTCGAACCCCGTTGTCTTGCAAACTTGTGTGAAAGTTTTC
TTCTGCTGAAATAACGTAAATACTGAAACCGGAAAGTTGTGGCGTTGGAA
AATGACCAATCGTTCTCGTCGAAGATCTGTCGGTCGATTTGATCGACGTG
CTTTTTGCGAACCGCACATACATAACACATGCCTTTCGCTGTCTGTATTC
GTTAGTCATTATTCATAAGTCATGAGATAAGATCTAGCTTGAAAAAACTT
CCACCTCCAGGGCGTTCTCAGAAGCACTACTCATGCCACTCACTCACTCT
ACGGACGCTTGTTGACGTGTCTTCTATTCGGGAGGGGGGGGGGGGGCATG
AATGGATTGATGTAATCAACCGAGTGATAAGTTAACTTCTAACGCTGTCC
GGAGAAGTCAGGTCTGTGTTCAACCATGTAAAAAATTGTCTCAGAAATGT
TGCTCTTTCATTATTTGCCTTGCGTGCTGATTAAATGCACAGGGAAAATC
TCAATCGACTCTCTCGTGCGAAGTCGCATCATGCAAGAGCTGCTGGAGCT
GCGTATG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig26614:1744..2700+

>mRNA_H-paniculata_contig26614.7271.1 ID=mRNA_H-paniculata_contig26614.7271.1|Name=mRNA_H-paniculata_contig26614.7271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig26614:1744..2700+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTACGACTCCGAAGGGCTGGGCTACCTGCGGGAGCAAGACCTGGAGAA
CTACATCTATGATCACATCCCTTCGATGCCGGCACTGCACGCCATCCACG
ACAACTTCTACCCGTTCTATGTGTTCACCGCGGTGCGACGGTTTATGTTC
TTCCTCGACCCAAGGCGTACAGTTTTACGACTCCGAAGGGCTGGGCTACC
TGCGGGAGCAAGACCTGGAGAACTACATCTATGATCACATCCCTTCGATG
CCGGCACTGCACGCCATCCACGACAACTTCTACCCGTTCTATGTGTTCAC
CGCGGTGCGACGGTTTATGTTCTTCCTCGACCCAAGGCGTACAGGGAAAA
TCTCAATCGACTCTCTCGTGCGAAGTCGCATCATGCAAGAGCTGCTGGAG
CTGCGTATGGGAAAATCTCAATCGACTCTCTCGTGCGAAGTCGCATCATG
CAAGAGCTGCTGGAGCTGCGTATG
back to top