mRNA_H-paniculata_contig26606.7268.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26606.7268.1
Unique NamemRNA_H-paniculata_contig26606.7268.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26606.7268.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 6.690e-20
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    4 TVQGAFHKFCKNISAELFDWHIFLPTGQDLEKVMHEYDRLGFTGATGSTDVTHFKWDCCP 183
            TV   FH+FCK  +AEL+D +++LPTG+DL KVM +YDR+GF GA GSTDVTH  W  CP
Sbjct:  110 TVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCP 169
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BLAST of mRNA_H-paniculata_contig26606.7268.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 9.600e-20
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    4 TVQGAFHKFCKNISAELFDWHIFLPTGQDLEKVMHEYDRLGFTGATGSTDVTHFKWDCCP 183
            TV   FH+FCK  +AEL+D +++LPTG+DL KVM +YDR+GF GA GSTDVTH  W  CP
Sbjct:  201 TVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCP 260
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BLAST of mRNA_H-paniculata_contig26606.7268.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.260e-17
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 STVQGAFHKFCKNISAELFDWHIFLPTGQ--DLEKVMHEYDRLGFTGATGSTDVTHFKWDCCP 183
            +TVQ  FHKFCK+ + E++D HI+LP+ Q  +L+ VM +YDRLGF+GA GS DVTH  W  CP
Sbjct:  151 ATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCP 213
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BLAST of mRNA_H-paniculata_contig26606.7268.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 6.460e-17
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   13 GAFHKFCKNISAELFDWHIFLPTGQDLEKVMHEYDRLGFTGATGSTDVTHFKWDCCP 183
              FHKFCK+ + ELF+ HI+LPTG   ++VM  YD+LG TGA GSTDVTH  W  CP
Sbjct:   33 ATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCP 89
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BLAST of mRNA_H-paniculata_contig26606.7268.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 9.070e-17
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 STVQGAFHKFCKNISAELFDWHIFLPTGQDLEKVMHEYDRLGFTGATGSTDVTHFKWDCCP 183
            S  Q  FHKFC++ +AE+FD HI+LPTG  L++VM  + +LG+TGA GSTDVTH  W+ CP
Sbjct:   62 SMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCP 122
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BLAST of mRNA_H-paniculata_contig26606.7268.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.680e-16
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    4 TVQGAFHKFCKNISAELFDWHIFLPTGQ--DLEKVMHEYDRLGFTGATGSTDVTHFKWDCCP 183
            TVQ  FHKFCK+ + E++D HI+LP+ Q  +L+ VM +YDRLGF+GA GS DVTH  W  CP
Sbjct:  125 TVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCP 186
[Close]
BLAST of mRNA_H-paniculata_contig26606.7268.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.820e-16
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   13 GAFHKFCKNISAELFDWHIFLPTGQDLEKVMHEYDRLGFTGATGSTDVTHFKWDCCP 183
              FHKFCK+ + ELF+ HI+LPTG   ++VM  YD+LG TGA GSTDVTH  W  CP
Sbjct:   33 ATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCP 89
[Close]
BLAST of mRNA_H-paniculata_contig26606.7268.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 5.430e-16
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 STVQGAFHKFCKNISAELFDWHIFLPTGQ--DLEKVMHEYDRLGFTGATGSTDVTHFKWDCCP 183
            +TVQ  FH FCK+ + E++D HI+LP+ Q  +L+ VM +YDRLGF+GA GS DVTH  W+ CP
Sbjct:  151 ATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCP 213
[Close]
BLAST of mRNA_H-paniculata_contig26606.7268.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.930e-16
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    4 TVQGAFHKFCKNISAELFDWHIFLPTGQD--LEKVMHEYDRLGFTGATGSTDVTHFKWDCCP 183
            TVQG FHKFC++ + E++D  I LPT +   L+ VM +YDRLGFTGA GS DVTH  W  CP
Sbjct:  112 TVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCP 173
[Close]
BLAST of mRNA_H-paniculata_contig26606.7268.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 8.340e-16
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   13 GAFHKFCKNISAELFDWHIFLPTGQDLEKVMHEYDRLGFTGATGSTDVTHFKWDCCP 183
              FHKFCK+ + ELF+ HI+LPTG   ++VM  YD+LG TGA GSTDVTH  W  CP
Sbjct:  280 ATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCP 336
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26606.7268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KY50_9PHAE6.690e-2061.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE9.600e-2061.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L642_9PHAE2.260e-1757.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K6N4_9PHAE6.460e-1759.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE9.070e-1757.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE2.680e-1658.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE2.820e-1659.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI5.430e-1655.56Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5KNX4_9PHAE5.930e-1658.06DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JCU6_9PHAE8.340e-1659.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26606contigH-paniculata_contig26606:3165..3356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929798.1213214-CDS-H-paniculata_contig26606:3164..33561622929798.1213214-CDS-H-paniculata_contig26606:3164..3356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26606 3165..3356 +
1691481015.4646463-CDS-H-paniculata_contig26606:3164..33561691481015.4646463-CDS-H-paniculata_contig26606:3164..3356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26606 3165..3356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26606.7268.1prot_H-paniculata_contig26606.7268.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26606 3165..3356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26606.7268.1

>prot_H-paniculata_contig26606.7268.1 ID=prot_H-paniculata_contig26606.7268.1|Name=mRNA_H-paniculata_contig26606.7268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
STVQGAFHKFCKNISAELFDWHIFLPTGQDLEKVMHEYDRLGFTGATGST
DVTHFKWDCCPCSF
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mRNA from alignment at H-paniculata_contig26606:3165..3356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26606.7268.1 ID=mRNA_H-paniculata_contig26606.7268.1|Name=mRNA_H-paniculata_contig26606.7268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig26606:3165..3356+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGACAGTGCAAGGAGCATTCCATAAGTTCTGCAAGAACATTTCGGCAGA
GCTGTTCGATTGGCATATATTCCTGCCGACGGGGCAGGATCTCGAGAAGG
TCATGCATGAATATGACCGCTTGGGGTTCACTGGGGCTACCGGCTCTACT
GATGTTACCCACTTCAAATGGGACTGCTGCCCGTGCTCCTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig26606:3165..3356+

>mRNA_H-paniculata_contig26606.7268.1 ID=mRNA_H-paniculata_contig26606.7268.1|Name=mRNA_H-paniculata_contig26606.7268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig26606:3165..3356+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGACAGTGCAAGGAGCATTCCATAAGTTCTGCAAGAACATTTCGGCAGA
GCTGTTCGATTGGCATATATTCCTGCCGACGGGGCAGGATCTCGAGAAGG
TCATGCATGAATATGACCGCTTGGGGTTCACTGGGGCTACCGGCTCTACT
GATGTTACCCACTTCAAATGGGACTGCTGCCCGTGCTCCTTTTCGACAGT
GCAAGGAGCATTCCATAAGTTCTGCAAGAACATTTCGGCAGAGCTGTTCG
ATTGGCATATATTCCTGCCGACGGGGCAGGATCTCGAGAAGGTCATGCAT
GAATATGACCGCTTGGGGTTCACTGGGGCTACCGGCTCTACTGATGTTAC
CCACTTCAAATGGGACTGCTGCCCGTGCTCCTTT
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