mRNA_H-paniculata_contig26604.7267.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26604.7267.1
Unique NamemRNA_H-paniculata_contig26604.7267.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26604.7267.1 vs. uniprot
Match: D8LQG6_ECTSI (Carboxypeptidase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG6_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 5.350e-24
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:   19 PFSRTVATSPDEHLVTSLPGLPNGALSTKHYAGHVPVTDGFQFYWLFESAHSDPDSRPLMIWLNGGP 219
            P     A+SP+EHLVT+LPGL +    TK YAGH+PV DGF FYWLFESA SDP S PL+IWLNGGP
Sbjct:   48 PGVSAAASSPEEHLVTALPGLKDKDFPTKQYAGHIPVVDGFHFYWLFESASSDPSSDPLVIWLNGGP 114
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BLAST of mRNA_H-paniculata_contig26604.7267.1 vs. uniprot
Match: A0A6H5K6E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6E8_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.020e-23
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:   37 ATSPDEHLVTSLPGLPNGALSTKHYAGHVPVTDGFQFYWLFESAHSDPDSRPLMIWLNGGP 219
            A+SP+EHLVT+LPGL +    TK YAGH+PV DGF FYWLFESA SDP S PL+IWLNGGP
Sbjct:   52 ASSPEEHLVTTLPGLKDKDFPTKQYAGHIPVVDGFHFYWLFESASSDPLSDPLVIWLNGGP 112
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BLAST of mRNA_H-paniculata_contig26604.7267.1 vs. uniprot
Match: A0A835YJ65_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ65_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 7.290e-17
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   37 ATSPDEHLVTSLPGLPNGALSTKHYAGHVPVTDGFQFYWLFESAHSDPDSRPLMIWLNGGP 219
            AT   +HLVT LPGL +GAL+ K YAG++PV  G  FYWLFESA+  P   PL+IWLNGGP
Sbjct:   61 ATKASDHLVTKLPGLQDGALTAKQYAGYIPVNGGKLFYWLFESANK-PALDPLVIWLNGGP 120
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BLAST of mRNA_H-paniculata_contig26604.7267.1 vs. uniprot
Match: A0A7S4SVP9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SVP9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.800e-13
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   31 TVATSPDEHLVTSLPGLPNGALSTKHYAGHVPVT---DGFQFYWLFES----AHSDPDSRPLMIWLNGGP 219
            T  +SPDEHL+TS+P LP+G   TK ++GH+P +   D   FYWLFE     ++    + PL+IWLNGGP
Sbjct:   75 TGPSSPDEHLITSIPLLPDGKFPTKQWSGHIPASHDDDKKLFYWLFEPDFSLSNGGDQNVPLLIWLNGGP 144
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BLAST of mRNA_H-paniculata_contig26604.7267.1 vs. uniprot
Match: A0A804MD97_MAIZE (Carboxypeptidase n=1 Tax=Zea mays TaxID=4577 RepID=A0A804MD97_MAIZE)

HSP 1 Score: 67.4 bits (163), Expect = 2.380e-11
Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   46 PDEHLVTSLPGLPNGALSTKHYAGHVPVTDGFQ-----FYWLFESAHSDPDSRPLMIWLNGGP 219
            P+  LVT LPG P  A+   HYAG+V VT G       FYW FE A  +PD +PL++WLNGGP
Sbjct:   35 PEADLVTGLPGQP--AVGFSHYAGYVDVTSGXXXXXXXFYWFFE-AEREPDKKPLLLWLNGGP 94
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BLAST of mRNA_H-paniculata_contig26604.7267.1 vs. uniprot
Match: A0A2P5XNH3_GOSBA (Uncharacterized protein n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A2P5XNH3_GOSBA)

HSP 1 Score: 63.5 bits (153), Expect = 2.820e-11
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   49 DEHLVTSLPGLPNGALSTKHYAGHVPVTDG---FQFYWLFESAHSDPDSRPLMIWLNGGPV 222
            D+HLVT+LPG P   +  +HYAG+V V +      FYW +E A S PD +PL++WLNGG +
Sbjct:   46 DDHLVTNLPGQP--PVDFRHYAGYVTVNEKNGRALFYWFYE-AMSQPDEKPLVLWLNGGKI 103
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BLAST of mRNA_H-paniculata_contig26604.7267.1 vs. uniprot
Match: A0A6G0UJ96_9BILA (Carboxypeptidase n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0UJ96_9BILA)

HSP 1 Score: 66.2 bits (160), Expect = 6.420e-11
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:   22 FSRTVATSPDEHLVTSLPGLPNGALSTKHYAGHVPVTDGFQFYWLFESAHSDPDSRPLMIWLNGGPV 222
            F   V+ +PD   VTSLPG  N  +   HY+G++  +D   F++ F  A +DPDS P+++WLNGGPV
Sbjct:   11 FLTLVSAAPDADKVTSLPGT-NFTVGFDHYSGYLNASDTKFFHYWFTKAQTDPDSSPVILWLNGGPV 76
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BLAST of mRNA_H-paniculata_contig26604.7267.1 vs. uniprot
Match: A0A8K0HGX9_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0HGX9_9ROSA)

HSP 1 Score: 66.2 bits (160), Expect = 6.900e-11
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:   43 SPDEHLVTSLPGLPNGALSTKHYAGHVPVTDGFQ---FYWLFESAHSDPDSRPLMIWLNGGPVRDLAG 237
            S +E LVT LPG P   ++ +HYAG+V V +  +   FYW +E+A S+PD +PL++WLNGGP     G
Sbjct:   43 SGNEDLVTDLPGQPQ--VNFRHYAGYVKVNESHERALFYWFYEAA-SNPDQKPLVLWLNGGPGCSSVG 107
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BLAST of mRNA_H-paniculata_contig26604.7267.1 vs. uniprot
Match: A0A8J5VNU7_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5VNU7_ZIZPA)

HSP 1 Score: 65.9 bits (159), Expect = 9.160e-11
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   37 ATSPDEHLVTSLPGLPNGALSTKHYAGHVPVTDGFQ---FYWLFESAHSDPDSRPLMIWLNGGP 219
            +T P++ LV  LPG P+  +  +HYAG+V V  G     FYW FE A  +P+ +PLM+WLNGGP
Sbjct:   31 STRPEDDLVNGLPGQPD--VGFRHYAGYVGVGSGSSKALFYWFFE-AEKEPEKKPLMLWLNGGP 91
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BLAST of mRNA_H-paniculata_contig26604.7267.1 vs. uniprot
Match: A0A8J5VFV2_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5VFV2_ZIZPA)

HSP 1 Score: 65.9 bits (159), Expect = 9.290e-11
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   37 ATSPDEHLVTSLPGLPNGALSTKHYAGHVPVTDGFQ---FYWLFESAHSDPDSRPLMIWLNGGP 219
            +T P++ LV  LPG P+  +  +HYAG+V V  G     FYW FE A  +P+ +PLM+WLNGGP
Sbjct:   31 STRPEDDLVNGLPGQPD--VGFRHYAGYVGVGSGSSKALFYWFFE-AEKEPEKKPLMLWLNGGP 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26604.7267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQG6_ECTSI5.350e-2467.16Carboxypeptidase (Partial) (Fragment) n=1 Tax=Ecto... [more]
A0A6H5K6E8_9PHAE2.020e-2372.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJ65_9STRA7.290e-1762.30Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A7S4SVP9_9STRA4.800e-1348.57Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A804MD97_MAIZE2.380e-1152.38Carboxypeptidase n=1 Tax=Zea mays TaxID=4577 RepID... [more]
A0A2P5XNH3_GOSBA2.820e-1149.18Uncharacterized protein n=1 Tax=Gossypium barbaden... [more]
A0A6G0UJ96_9BILA6.420e-1144.78Carboxypeptidase n=1 Tax=Halicephalobus sp. NKZ332... [more]
A0A8K0HGX9_9ROSA6.900e-1147.06Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A8J5VNU7_ZIZPA9.160e-1148.44Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
A0A8J5VFV2_ZIZPA9.290e-1148.44Uncharacterized protein n=1 Tax=Zizania palustris ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26604contigH-paniculata_contig26604:2765..3004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue5.7e-20
Seed eggNOG ortholog2880.D8LQG6
Preferred nameKEX1
KEGG koko:K01288,ko:K09645
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000322,GO:0000323,GO:0000324,GO:0000746,GO:0000747,GO:0001906,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0005802,GO:0006508,GO:0006518,GO:0006807,GO:0006915,GO:0007039,GO:0008150,GO:0008152,GO:0008219,GO:0008233,GO:0008236,GO:0008238,GO:0008277,GO:0009056,GO:0009057,GO:0009058,GO:0009405,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010515,GO:0010646,GO:0010648,GO:0010720,GO:0010969,GO:0012501,GO:0012505,GO:0016485,GO:0016787,GO:0017171,GO:0019538,GO:0019748,GO:0019835,GO:0019953,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0030447,GO:0030448,GO:0031135,GO:0031137,GO:0031138,GO:0031640,GO:0031984,GO:0034305,GO:0034641,GO:0035821,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043900,GO:0043901,GO:0043937,GO:0043938,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044364,GO:0044419,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044703,GO:0044764,GO:0045595,GO:0045597,GO:0045744,GO:0046937,GO:0046938,GO:0046999,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051603,GO:0051604,GO:0051704,GO:0051715,GO:0060238,GO:0060240,GO:0060284,GO:0065007,GO:0070008,GO:0070011,GO:0071704,GO:0075306,GO:0075307,GO:0090029,GO:0098791,GO:0140096,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1903664,GO:1903666,GO:2000241,GO:2000242
EggNOG free text desc.PFAM Peptidase S10, serine carboxypeptidase
EggNOG OGsCOG2939@1,KOG1282@2759
EC3.4.16.6
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929798.0685272-CDS-H-paniculata_contig26604:2764..30041622929798.0685272-CDS-H-paniculata_contig26604:2764..3004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26604 2765..3004 +
1691481015.4509294-CDS-H-paniculata_contig26604:2764..30041691481015.4509294-CDS-H-paniculata_contig26604:2764..3004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26604 2765..3004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26604.7267.1prot_H-paniculata_contig26604.7267.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26604 2765..3004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26604.7267.1

>prot_H-paniculata_contig26604.7267.1 ID=prot_H-paniculata_contig26604.7267.1|Name=mRNA_H-paniculata_contig26604.7267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
QQRYDYPFSRTVATSPDEHLVTSLPGLPNGALSTKHYAGHVPVTDGFQFY
WLFESAHSDPDSRPLMIWLNGGPVRDLAG*
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mRNA from alignment at H-paniculata_contig26604:2765..3004+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26604.7267.1 ID=mRNA_H-paniculata_contig26604.7267.1|Name=mRNA_H-paniculata_contig26604.7267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig26604:2765..3004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACAACGCTACGATTATCCATTCTCCAGGACTGTCGCTACATCACCAGA
CGAGCATCTGGTCACTTCTCTGCCGGGGCTGCCCAATGGCGCTCTCTCGA
CAAAGCACTACGCTGGACATGTGCCAGTCACCGACGGATTCCAATTCTAT
TGGCTTTTCGAGAGCGCGCATTCGGATCCTGATTCTCGGCCGTTGATGAT
TTGGCTCAACGGTGGACCGGTGAGGGATTTAGCGGGCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig26604:2765..3004+

>mRNA_H-paniculata_contig26604.7267.1 ID=mRNA_H-paniculata_contig26604.7267.1|Name=mRNA_H-paniculata_contig26604.7267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig26604:2765..3004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACAACGCTACGATTATCCATTCTCCAGGACTGTCGCTACATCACCAGA
CGAGCATCTGGTCACTTCTCTGCCGGGGCTGCCCAATGGCGCTCTCTCGA
CAAAGCACTACGCTGGACATGTGCCAGTCACCGACGGATTCCAATTCTAT
TGGCTTTTCGAGAGCGCGCATTCGGATCCTGATTCTCGGCCGTTGATGAT
TTGGCTCAACGGTGGACCGGTGAGGGATTTAGCGGGCTAACAACAACGCT
ACGATTATCCATTCTCCAGGACTGTCGCTACATCACCAGACGAGCATCTG
GTCACTTCTCTGCCGGGGCTGCCCAATGGCGCTCTCTCGACAAAGCACTA
CGCTGGACATGTGCCAGTCACCGACGGATTCCAATTCTATTGGCTTTTCG
AGAGCGCGCATTCGGATCCTGATTCTCGGCCGTTGATGATTTGGCTCAAC
GGTGGACCGGTGAGGGATTTAGCGGGCTAA
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