mRNA_H-paniculata_contig266.7264.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig266.7264.1
Unique NamemRNA_H-paniculata_contig266.7264.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig266.7264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig266contigH-paniculata_contig266:30955..31693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size187
Cds size162
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig266.7264.1prot_H-paniculata_contig266.7264.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig266 30955..31670 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.5940719-CDS-H-paniculata_contig266:30954..310521622929797.5940719-CDS-H-paniculata_contig266:30954..31052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig266 30955..31052 -
1691481015.1983058-CDS-H-paniculata_contig266:30954..310521691481015.1983058-CDS-H-paniculata_contig266:30954..31052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig266 30955..31052 -
1622929797.6128573-CDS-H-paniculata_contig266:31606..316701622929797.6128573-CDS-H-paniculata_contig266:31606..31670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig266 31607..31670 -
1691481015.2075894-CDS-H-paniculata_contig266:31606..316701691481015.2075894-CDS-H-paniculata_contig266:31606..31670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig266 31607..31670 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.6289988-UTR-H-paniculata_contig266:31670..316931622929797.6289988-UTR-H-paniculata_contig266:31670..31693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig266 31671..31693 -
1691481015.22453-UTR-H-paniculata_contig266:31670..316931691481015.22453-UTR-H-paniculata_contig266:31670..31693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig266 31671..31693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig266.7264.1

>prot_H-paniculata_contig266.7264.1 ID=prot_H-paniculata_contig266.7264.1|Name=mRNA_H-paniculata_contig266.7264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
MEMRDPFGADVQSGLHSVFVSCLSNDAAGGNDSTWTAGARELEELETFSR
ELIQ
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mRNA from alignment at H-paniculata_contig266:30955..31693-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig266.7264.1 ID=mRNA_H-paniculata_contig266.7264.1|Name=mRNA_H-paniculata_contig266.7264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=739bp|location=Sequence derived from alignment at H-paniculata_contig266:30955..31693- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTGTTTGAGTGTTCCTTGCAAATGGAGATGAGGGACCCATTCGGCGCA
GATGTTCAGTCGGGGTTACATTCTGTCTTCGTCTCATGTGAGAGCGAAGA
CGGCAATCAGCGTTTGACGAGGGCAGGGGAACATAATGACCAAATTACGT
CGAGGGGACGGGCCAAACGGCGAAGAAATCGTACCATTGCATATGTTCTT
ACCGGTGATTGTTATTCATACCATAGACTACGATCCTGTTTCAATGAGCA
TCCTCCTGCTGCAGCAATGCCGAGGCTCGGAGTGGCTTCCACCATTCCAT
ACCCTTTCCATTATTCCTGAGCTTCCGCCCACTGAAGGGTTAGCTGCACT
CGATTTGAGGATGAATCGTTTGATGATGTTACCCCACTCTGCAGCTCAAA
ACCAGGATCCATTCAATGCCTTAACATTGACTGCTCTTGGGGCACGATAG
ACAGAACCTACCTTTATGTTCGTGTTGCTGTCTCTCAGCGTGTTTGCTGC
CACAAGCGCCTTGTCACGAATACGGACGACCTCCGCTGCCCCTTTCGATC
TCTCAACCTGCCCCCGCACTTCCTCCCTCACCCCTTGCGCTCCCCACATC
TTCTCTCTAATCTTCCAACACATTATCTGTTTCATTCGAAGGCTTGAGTA
ACGACGCTGCAGGTGGGAACGACAGCACATGGACTGCTGGAGCGCGGGAG
TTGGAAGAGCTGGAGACGTTCTCTCGTGAACTCATTCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig266:30955..31693-

>mRNA_H-paniculata_contig266.7264.1 ID=mRNA_H-paniculata_contig266.7264.1|Name=mRNA_H-paniculata_contig266.7264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig266:30955..31693- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATGAGGGACCCATTCGGCGCAGATGTTCAGTCGGGGTTACATTC
TGTCTTCGTCTCATATGGAGATGAGGGACCCATTCGGCGCAGATGTTCAG
TCGGGGTTACATTCTGTCTTCGTCTCATGCTTGAGTAACGACGCTGCAGG
TGGGAACGACAGCACATGGACTGCTGGAGCGCGGGAGTTGGAAGAGCTGG
AGACGTTCTCTCGTGAACTCATTCAAGCTTGAGTAACGACGCTGCAGGTG
GGAACGACAGCACATGGACTGCTGGAGCGCGGGAGTTGGAAGAGCTGGAG
ACGTTCTCTCGTGAACTCATTCAA
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