mRNA_H-paniculata_contig2659.7260.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2659.7260.1
Unique NamemRNA_H-paniculata_contig2659.7260.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2659.7260.1 vs. uniprot
Match: A0A7S0NCK9_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0NCK9_9CRYP)

HSP 1 Score: 166 bits (421), Expect = 8.170e-51
Identity = 78/115 (67.83%), Postives = 95/115 (82.61%), Query Frame = 1
Query:    1 FVRVMEEITGVLSVWESKGRWDTILHAGKRDTKPSTVFDKILAEEIPSTVVFEDDRVLAFRDINPVAPTHVLIIPKRRNGLTQLRYATADHAGILGHMLEVAAKIATDEELEGFR 345
            F RV  EI G L  WE  GRW+TILHAG RDT+ +T+FD+I+A++IPS+VVFED+RVLAF D+NP APTHVL++PK+R GLTQLRYAT DH GILGHML VAAKIA  + L+G+R
Sbjct:    5 FGRVYGEIRGALQKWEQDGRWNTILHAGLRDTEAATIFDRIIAKQIPSSVVFEDERVLAFDDVNPQAPTHVLLVPKQREGLTQLRYATEDHEGILGHMLAVAAKIAKQKNLQGYR 119          
BLAST of mRNA_H-paniculata_contig2659.7260.1 vs. uniprot
Match: A0A835YG69_9STRA (Glutathione s-transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YG69_9STRA)

HSP 1 Score: 171 bits (432), Expect = 9.830e-50
Identity = 84/113 (74.34%), Postives = 93/113 (82.30%), Query Frame = 1
Query:    7 RVMEEITGVLSVWESKGRWDTILHAGKRDTKPSTVFDKILAEEIPSTVVFEDDRVLAFRDINPVAPTHVLIIPKRRNGLTQLRYATADHAGILGHMLEVAAKIATDEELEGFR 345
            RV EEI G L  W+ +GRWDTILHAG RD  P T+FD+IL +EIPSTVV ED  VLAFRDINPVAP+HVLIIPK R GLTQLR+ATADHA +LG MLE AAKIA DE+LEGFR
Sbjct:  233 RVKEEIEGALRPWDERGRWDTILHAGARDAAPETIFDRILRKEIPSTVVHEDAYVLAFRDINPVAPSHVLIIPKVREGLTQLRFATADHAFVLGKMLEAAAKIAADEKLEGFR 345          
BLAST of mRNA_H-paniculata_contig2659.7260.1 vs. uniprot
Match: D8LP27_ECTSI (Glutathione s-transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP27_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 3.550e-49
Identity = 83/113 (73.45%), Postives = 93/113 (82.30%), Query Frame = 1
Query:    7 RVMEEITGVLSVWESKGRWDTILHAGKRDTKPSTVFDKILAEEIPSTVVFEDDRVLAFRDINPVAPTHVLIIPKRRNGLTQLRYATADHAGILGHMLEVAAKIATDEELEGFR 345
            R+ +EI   L  W + GRWDTILHAGKRDT+P ++ DK LA+EIPST V  DD V  FRDI PVAPTHVLIIPK RNGLTQLR+ATADHAG+LGHMLEVAAKIA +EELEGFR
Sbjct:  241 RIADEIKAPLDKWGANGRWDTILHAGKRDTEPPSILDKFLAKEIPSTGVLGDDSVRPFRDIAPVAPTHVLIIPKVRNGLTQLRHATADHAGVLGHMLEVAAKIAKEEELEGFR 353          
BLAST of mRNA_H-paniculata_contig2659.7260.1 vs. uniprot
Match: A0A6U4NQT2_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4NQT2_HEMAN)

HSP 1 Score: 161 bits (407), Expect = 9.260e-46
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 FVRVMEEITGVLSVWESKGRWDTILHAGKRDTKPSTVFDKILAEEIPSTVVFEDDRVLAFRDINPVAPTHVLIIPKRRNGLTQLRYATADHAGILGHMLEVAAKIATDEELEGFR 345
            F +V EEITG L  W+  GRWDTI  AGKRDT P+T+FDKI+A+EIPS +VFEDD  L F+D+NP APTH+L+IPK+R GLTQLR+AT DH G+LGHM+   A +  + +LEG+R
Sbjct:  257 FAKVYEEITGALKGWDENGRWDTIQGAGKRDTAPATIFDKIIAKEIPSDIVFEDDHCLVFKDVNPQAPTHLLVIPKKREGLTQLRHATEDHKGMLGHMMATVASVVREHKLEGYR 371          
BLAST of mRNA_H-paniculata_contig2659.7260.1 vs. uniprot
Match: A0A6V3BGT8_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3BGT8_HETAK)

HSP 1 Score: 158 bits (400), Expect = 9.700e-45
Identity = 71/114 (62.28%), Postives = 92/114 (80.70%), Query Frame = 1
Query:    4 VRVMEEITGVLSVWESKGRWDTILHAGKRDTKPSTVFDKILAEEIPSTVVFEDDRVLAFRDINPVAPTHVLIIPKRRNGLTQLRYATADHAGILGHMLEVAAKIATDEELEGFR 345
            +R+  E+ G L  WE+ GRWDTIL AG RD  P+T+FDKI+A+EIP+ V++EDD+ LAFRDINP APTH L+IPK+R GLTQLR AT DH G+LGH++ VA ++AT++ LEGFR
Sbjct:  256 MRIHAEVLGALDGWEAAGRWDTILGAGLRDDAPATIFDKIIAKEIPADVLYEDDKCLAFRDINPAAPTHFLVIPKQREGLTQLRNATEDHVGLLGHLMLVAGRVATEQNLEGFR 369          
BLAST of mRNA_H-paniculata_contig2659.7260.1 vs. uniprot
Match: L1JNC2_GUITC (HIT domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JNC2_GUITC)

HSP 1 Score: 152 bits (383), Expect = 1.310e-44
Identity = 71/115 (61.74%), Postives = 89/115 (77.39%), Query Frame = 1
Query:    1 FVRVMEEITGVLSVWESKGRWDTILHAGKRDTKPSTVFDKILAEEIPSTVVFEDDRVLAFRDINPVAPTHVLIIPKRRNGLTQLRYATADHAGILGHMLEVAAKIATDEELEGFR 345
            F +V +EI+  LS W+   RW  ILHAGKRD    T+FDKI+A+ IPS VVFEDD+VL F+DINP APTH+L+IPKRR  L+QLR+ATA+H GILGHML V AK+A++E L  +R
Sbjct:   37 FAKVQQEISDALSKWDENNRWAGILHAGKRDEAEQTIFDKIVAKSIPSQVVFEDDKVLVFKDINPQAPTHLLVIPKRRETLSQLRFATAEHEGILGHMLAVVAKVASEEGLGDYR 151          
BLAST of mRNA_H-paniculata_contig2659.7260.1 vs. uniprot
Match: R1E152_EMIHU (HIT domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E152_EMIHU)

HSP 1 Score: 142 bits (358), Expect = 8.330e-41
Identity = 70/113 (61.95%), Postives = 84/113 (74.34%), Query Frame = 1
Query:    7 RVMEEITGVLSVWESKGRWDTILHAGKRDTKPSTVFDKILAEEIPSTVVFEDDRVLAFRDINPVAPTHVLIIPKRRNGLTQLRYATADHAGILGHMLEVAAKIATDEELEGFR 345
            RV +EI   L  WE +GRWD +L+AG RD  P+T+FDKIL++EIPS VVFED   LAFRDINPVAP H+LIIPK R+GLT L  ATA+H+ ILGH++  AA IA  E L  FR
Sbjct:   40 RVADEIRSGLQPWEERGRWDAMLYAGARDVAPATLFDKILSKEIPSEVVFEDALCLAFRDINPVAPAHILIIPKHRDGLTGLGAATAEHSAILGHLMVAAAAIAKQEGLSEFR 152          
BLAST of mRNA_H-paniculata_contig2659.7260.1 vs. uniprot
Match: A0A0G4F2S0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F2S0_VITBC)

HSP 1 Score: 143 bits (361), Expect = 2.230e-39
Identity = 67/113 (59.29%), Postives = 84/113 (74.34%), Query Frame = 1
Query:    7 RVMEEITGVLSVWESKGRWDTILHAGKRDTKPSTVFDKILAEEIPSTVVFEDDRVLAFRDINPVAPTHVLIIPKRRNGLTQLRYATADHAGILGHMLEVAAKIATDEELEGFR 345
            RV +EITGVL  W  KGRW TIL AG +D  P+T+FDKI+ +++ + +V EDDR +A RDINP  PTHVL+ PKRR+ LTQLR AT +H GILGH+L  AAK+A DE  E +R
Sbjct:  210 RVFDEITGVLKGWSEKGRWTTILGAGLKDQAPATLFDKIMNKQVSADIVHEDDRCMAIRDINPQGPTHVLLFPKRRDNLTQLRQATEEHKGILGHLLVTAAKLARDEGFEAYR 322          
BLAST of mRNA_H-paniculata_contig2659.7260.1 vs. uniprot
Match: A0A0G4I3R4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I3R4_9ALVE)

HSP 1 Score: 144 bits (362), Expect = 5.400e-39
Identity = 66/114 (57.89%), Postives = 88/114 (77.19%), Query Frame = 1
Query:    4 VRVMEEITGVLSVWESKGRWDTILHAGKRDTKPSTVFDKILAEEIPSTVVFEDDRVLAFRDINPVAPTHVLIIPKRRNGLTQLRYATADHAGILGHMLEVAAKIATDEELEGFR 345
            +RV EEI+G L  W+ KGRW +IL AGK DT P TVFDKI+++E+PS V++ED+  +AF+D NP AP H L++PK+R  LTQLR A+ DH G+LGH+L VA+KIA +  LEG+R
Sbjct:  272 MRVREEISGPLRAWDEKGRWKSILGAGKEDTDPPTVFDKIISKELPSEVLYEDNVCMAFKDANPQAPVHFLVVPKKRKTLTQLRNASGDHKGLLGHLLLVASKIAKEMNLEGYR 385          
BLAST of mRNA_H-paniculata_contig2659.7260.1 vs. uniprot
Match: A0A7S3P858_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P858_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.810e-38
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    1 FVRVMEEITGVLSVWESKGRWDTILHAGKRDTKPSTVFDKILAEEIPSTVVFEDDRVLAFRDINPVAPTHVLIIPKRRNGLTQLRYATADHAGILGHMLEVAAKIATDEEL 333
            F +V  EI G L  W++ GRWDTIL AG RDT   T+FDKI+A  IP+T+V EDD+VLAFRDINP AP HVL+IPK RNGLT+L  ++ +H  ILG +L  A +IA DE L
Sbjct:   70 FAQVYNEIQGALEKWDANGRWDTILGAGLRDTADPTLFDKIVAGSIPATIVKEDDKVLAFRDINPAAPVHVLVIPKDRNGLTRLTKSSPEHVDILGRLLVAAGEIARDESL 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2659.7260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0NCK9_9CRYP8.170e-5167.83Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A835YG69_9STRA9.830e-5074.34Glutathione s-transferase n=1 Tax=Tribonema minus ... [more]
D8LP27_ECTSI3.550e-4973.45Glutathione s-transferase n=2 Tax=Ectocarpus TaxID... [more]
A0A6U4NQT2_HEMAN9.260e-4661.74Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A6V3BGT8_HETAK9.700e-4562.28Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
L1JNC2_GUITC1.310e-4461.74HIT domain-containing protein n=2 Tax=Guillardia t... [more]
R1E152_EMIHU8.330e-4161.95HIT domain-containing protein n=2 Tax=Emiliania hu... [more]
A0A0G4F2S0_VITBC2.230e-3959.29Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4I3R4_9ALVE5.400e-3957.89Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S3P858_9STRA1.810e-3859.46Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2659contigH-paniculata_contig2659:8996..10077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue3.7e-33
Seed eggNOG ortholog55529.EKX49690
KEGG koko:K02503
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nucleoside phosphate binding
EggNOG OGsCOG0537@1,KOG3275@2759
COG Functional cat.FG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons3
Model size348
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2659.7260.1prot_H-paniculata_contig2659.7260.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2659 8996..10065 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.3385422-CDS-H-paniculata_contig2659:8995..91611622929797.3385422-CDS-H-paniculata_contig2659:8995..9161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2659 8996..9161 -
1691481015.0960314-CDS-H-paniculata_contig2659:8995..91611691481015.0960314-CDS-H-paniculata_contig2659:8995..9161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2659 8996..9161 -
1622929797.361558-CDS-H-paniculata_contig2659:9396..95191622929797.361558-CDS-H-paniculata_contig2659:9396..9519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2659 9397..9519 -
1691481015.1066108-CDS-H-paniculata_contig2659:9396..95191691481015.1066108-CDS-H-paniculata_contig2659:9396..9519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2659 9397..9519 -
1622929797.3809643-CDS-H-paniculata_contig2659:10018..100651622929797.3809643-CDS-H-paniculata_contig2659:10018..10065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2659 10019..10065 -
1691481015.1159341-CDS-H-paniculata_contig2659:10018..100651691481015.1159341-CDS-H-paniculata_contig2659:10018..10065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2659 10019..10065 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.3993855-UTR-H-paniculata_contig2659:10065..100771622929797.3993855-UTR-H-paniculata_contig2659:10065..10077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2659 10066..10077 -
1691481015.1310723-UTR-H-paniculata_contig2659:10065..100771691481015.1310723-UTR-H-paniculata_contig2659:10065..10077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2659 10066..10077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2659.7260.1

>prot_H-paniculata_contig2659.7260.1 ID=prot_H-paniculata_contig2659.7260.1|Name=mRNA_H-paniculata_contig2659.7260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MEEITGVLSVWESKGRWDTILHAGKRDTKPSTVFDKILAEEIPSTVVFED
DRVLAFRDINPVAPTHVLIIPKRRNGLTQLRYATADHAGILGHMLEVAAK
IATDEELEGFR*
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mRNA from alignment at H-paniculata_contig2659:8996..10077-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2659.7260.1 ID=mRNA_H-paniculata_contig2659.7260.1|Name=mRNA_H-paniculata_contig2659.7260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1082bp|location=Sequence derived from alignment at H-paniculata_contig2659:8996..10077- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGTCAGGGTGATGGAGGAGATAACGGGGGTGCTTTCGGTTTGGGAATC CAAAGGCAGGTAAGGTGCAGCTAAAAAAGTAGCGGTGAGTCACGGGAGGT CGAAATCTTGAGGTTTTTTGTTTTGACGCAAATGATGATGATAACAGCAA TTTATCGAAATAATTATGCCTTCAAACTCTATCTTTTTCGGGGGGGGGGG GGGTTCGTTTCATTGTTGTGCTTAAACATTGATCATGAGCGATTCTGTTG TAGGCAATGAATGTTAGTACAAGGCACGGCGCCACTCCTACAGGCGCACG GCAGTACAGTAGTCCAGGAACGCATCTTTTGTGTTGAGGCTCACGGTGTC TGTAGAGATAATACAAACTTGACCTGCATACGGTGTTCAGAGATACTGGC TATACAGTCATCGTAGCTCAATTTAGTATACACCAGGAAGGATTTTATGG GGTACTACAGTCCCAGCTGCATGTATCTGCTCTAGGGTATAATATATGGA CACGAGGTCCGCGGTGTGTGTTATCATGCAATGACTATTTCGGAATTCTA CAACGCAGGTGGGACACCATCCTGCACGCGGGCAAGAGAGACACGAAGCC GAGTACTGTGTTCGACAAGATCCTTGCGGAGGAGATTCCCTCCACTGTCG TGTTCGAAGATGATCGTGTACTAGCCTTCCGGTGAAGTTGTTGTTATAGT CATGTTCCGTGTATTTTATGTTGTTCTCGTTGTTCTCGTTGTTCTCGTTG TACTAATAGTCCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTAT CGTCTATCTGCAAATAATACAGGTGATTATTTTTCCCTTGTTCTCTCAAC TGACATCCTCCCTTCTCCCTCTCTCTGGTTTTTCCCTCTTCGACATACAC ACACACATTCGCACAGGGACATCAACCCCGTCGCCCCCACGCACGTTCTT ATCATCCCGAAGAGGCGTAATGGTTTGACGCAACTGCGGTACGCTACCGC CGATCACGCCGGGATACTTGGGCACATGCTAGAGGTAGCGGCCAAAATCG CAACAGACGAAGAGCTAGAGGGATTCAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2659:8996..10077-

>mRNA_H-paniculata_contig2659.7260.1 ID=mRNA_H-paniculata_contig2659.7260.1|Name=mRNA_H-paniculata_contig2659.7260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig2659:8996..10077- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAGATAACGGGGGTGCTTTCGGTTTGGGAATCCAAAGGCAGATG
GAGGAGATAACGGGGGTGCTTTCGGTTTGGGAATCCAAAGGCAGGTGGGA
CACCATCCTGCACGCGGGCAAGAGAGACACGAAGCCGAGTACTGTGTTCG
ACAAGATCCTTGCGGAGGAGATTCCCTCCACTGTCGTGTTCGAAGATGAT
CGTGTACTAGCCTTCCGGTGGGACACCATCCTGCACGCGGGCAAGAGAGA
CACGAAGCCGAGTACTGTGTTCGACAAGATCCTTGCGGAGGAGATTCCCT
CCACTGTCGTGTTCGAAGATGATCGTGTACTAGCCTTCCGGGACATCAAC
CCCGTCGCCCCCACGCACGTTCTTATCATCCCGAAGAGGCGTAATGGTTT
GACGCAACTGCGGTACGCTACCGCCGATCACGCCGGGATACTTGGGCACA
TGCTAGAGGTAGCGGCCAAAATCGCAACAGACGAAGAGCTAGAGGGATTC
AGGTAAGGACATCAACCCCGTCGCCCCCACGCACGTTCTTATCATCCCGA
AGAGGCGTAATGGTTTGACGCAACTGCGGTACGCTACCGCCGATCACGCC
GGGATACTTGGGCACATGCTAGAGGTAGCGGCCAAAATCGCAACAGACGA
AGAGCTAGAGGGATTCAGGTAA
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