mRNA_H-paniculata_contig2657.7255.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2657.7255.1
Unique NamemRNA_H-paniculata_contig2657.7255.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2657.7255.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 6.990e-26
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    1 KMWWLDGEKVIAQEDGATPHTDKGTPQASNNAGTDGGWRVKLVTQPAQSPDLNINDLGIFASLKSRVWGERYGTVDDLV 237
            KM WL  ++V+ Q+DGA+PHT KG P+  N+AG   GW V+LVTQPAQSPDLNINDLG FASLK RVWG    ++D+LV
Sbjct:  286 KMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig2657.7255.1 vs. uniprot
Match: A0A7S3GU94_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU94_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.130e-21
Identity = 44/119 (36.97%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    1 KMWWLDGEKVIAQEDGATPHTDKGTPQASNNAGTDGGWRVKLVTQPAQSPDLNINDLGIFASLKSRVWGERYGT--VDDLVDGVKSMYDAYNVDTLERVWQSLFERYKQVLRAIGGNDF 351
            KM W+   ++  Q DGA PHT  G     +   +  GW + +V Q AQSPDLN+ DLG+F SLK +V   + G   +D+L+  V+ +Y  Y+ DTL+++W      + +++RA+G N +
Sbjct:    6 KMPWMRNRRLKIQHDGARPHTAGGLEDEVHATASTEGWHITMVRQRAQSPDLNVMDLGLFHSLKVQVIQLKDGAHNIDELIQKVRVVYQQYSRDTLDQIWGHQVACWTEIMRAMGSNQY 124          
BLAST of mRNA_H-paniculata_contig2657.7255.1 vs. uniprot
Match: A0A7S2FC44_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC44_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 5.270e-16
Identity = 43/112 (38.39%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   19 GEKVIAQEDGATPHTDKGTPQASNNAGTDGGWRVKLVTQPAQSPDLNINDLGIFASLKSRVWGERYG-TVDDLVDGVKSMYDAYNVDTLERVWQSLFERYKQVLRAIGGNDF 351
            G  +  Q+DGA PHT   T       G   G+ +K+ TQPAQSPDLN+NDLG F SLK          +V++++  ++  Y+    D L+R++ SL   Y+ +L+  G NDF
Sbjct:   29 GTPIWIQQDGAKPHTAAET--WLKGQGKKEGFDLKVTTQPAQSPDLNVNDLGFFRSLKCAATNVAEAFSVEEMIKYIRQAYEEMPADKLDRMFMSLINNYRLLLKHDGDNDF 138          
BLAST of mRNA_H-paniculata_contig2657.7255.1 vs. uniprot
Match: A0A081AWC8_PHYPR (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A081AWC8_PHYPR)

HSP 1 Score: 75.5 bits (184), Expect = 4.370e-15
Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = 1
Query:   10 WLDGEKVIAQEDGATPHTDKGTPQASNNAGTDGGWRVKLVTQPAQSPDLNINDLGIFASLKSRVWGERYGTVDDLVDGVKSMYDAYNVDTLERVWQSLFERYKQVLRAIGGNDF 351
            W D   + AQ+D A  H     P     AG +GGW ++L+ QP  SPDLN  DLG+FASL+S  +     +++DL+D V   Y   + DT++ ++ +L      VL   GGN +
Sbjct:    2 WRD--PIFAQQDNAKAHISPFDPDILA-AGLEGGWSIRLIFQPPNSPDLNALDLGLFASLQSIQYHLPIYSIEDLIDAVDDAYMQISTDTIDDIFLTLQACMLCVLEEDGGNHY 112          
BLAST of mRNA_H-paniculata_contig2657.7255.1 vs. uniprot
Match: UPI00104066C4 (uncharacterized protein LOC114370211 n=1 Tax=Glycine soja TaxID=3848 RepID=UPI00104066C4)

HSP 1 Score: 78.6 bits (192), Expect = 4.610e-15
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   19 GEKVIAQEDGATPHTDKGTPQASNNAGTDGGWRVKLVTQPAQSPDLNINDLGIFASLKSRVWGERYGTVDDLVDGVKSMYDAYNVDTLERVWQSLFERYKQVLRAIGGNDF 351
            G  +  Q+D A  H D          GT  G+ ++L+ QPA SPDLNI DLG F++++S     R  +VD+L++ VK  +D Y    +E VW +L    +++L+  G N +
Sbjct:  139 GSAIFIQQDNARSHVDPNDEDIIR-VGTQNGFNIRLMCQPANSPDLNILDLGFFSAIQSLQQKVRANSVDELIEAVKKSFDEYPTKKVEYVWLTLQLCMREILKVEGSNRY 248          
BLAST of mRNA_H-paniculata_contig2657.7255.1 vs. uniprot
Match: UPI00053F7236 (uncharacterized protein LOC104908485 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7236)

HSP 1 Score: 78.2 bits (191), Expect = 5.480e-15
Identity = 35/110 (31.82%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   22 EKVIAQEDGATPHTDKGTPQASNNAGTDGGWRVKLVTQPAQSPDLNINDLGIFASLKSRVWGERYGTVDDLVDGVKSMYDAYNVDTLERVWQSLFERYKQVLRAIGGNDF 351
            +++  Q+D A  H  +G  +A   A T  G+ +KL+ QPAQSPDLN+ DLG F ++++ ++      +D+L++ V+  YD ++ + ++  W  L     ++L+  GGN++
Sbjct:  124 KEIFIQQDNARAHI-QGNDEAFKAAATQNGFNIKLIQQPAQSPDLNVLDLGFFRAIQALMYQTFPKNIDELIENVQDAYDKFDPNVVKYTWLKLHWVMVEILKVKGGNNY 232          
BLAST of mRNA_H-paniculata_contig2657.7255.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.790e-14
Identity = 41/106 (38.68%), Postives = 60/106 (56.60%), Query Frame = 1
Query:   28 VIAQEDGATPHTDKGTPQASNNAGTDGGWRVKLVTQPAQSPDLNINDLGIFASLKSRVWGERYGTVDDLVDGVKSMYDAYNVDTLERVWQSLFERYKQVLRAIGGN 345
            +  Q+DGA PH   G P+   +A +  G  +KLVTQPA SPDLNI DLG FA++++  + +   T+D+ +D V   +     D L+ VW SL  R   ++   G N
Sbjct:  272 LYIQQDGARPHCTDGCPELVASAASF-GLNIKLVTQPANSPDLNILDLGFFAAIQTLQYRKCPKTIDEFLDAVHESFHELKSDCLDSVWLSLHRRMATIIDHYGDN 376          
BLAST of mRNA_H-paniculata_contig2657.7255.1 vs. uniprot
Match: UPI001C26D651 (uncharacterized protein LOC121757666 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C26D651)

HSP 1 Score: 77.8 bits (190), Expect = 2.530e-14
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   28 VIAQEDGATPHTDKGTPQASNNAGTDGGWRVKLVTQPAQSPDLNINDLGIFASLKSRVWGERYGTVDDLVDGVKSMYDAYNVDTLERVWQSLFERYKQVLRAIGGNDF 351
            +  Q+D ATPH     P+    A +D G+R+KL+ QPA SPD NI DL  F +++S  + ++  TVD+LV  V S +   +  TL RV+ SL     ++LR  GGN +
Sbjct:  420 IYIQQDNATPHITAMDPEFQAVANSD-GFRIKLICQPANSPDTNILDLSFFRAIQSLHYEKQCKTVDELVGNVCSSFAELSPQTLNRVFLSLQACLTEILRCRGGNGY 526          
BLAST of mRNA_H-paniculata_contig2657.7255.1 vs. uniprot
Match: W2QBI0_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QBI0_PHYPN)

HSP 1 Score: 76.6 bits (187), Expect = 4.490e-14
Identity = 39/110 (35.45%), Postives = 60/110 (54.55%), Query Frame = 1
Query:   22 EKVIAQEDGATPHTDKGTPQASNNAGTDGGWRVKLVTQPAQSPDLNINDLGIFASLKSRVWGERYGTVDDLVDGVKSMYDAYNVDTLERVWQSLFERYKQVLRAIGGNDF 351
            E +  ++D A PH     P     AG +GGW ++L+ QP  SPDLN+ DLG+FAS++S  +        DL+D V   Y   + DTL+ ++ +L      +L+  GGN +
Sbjct:  211 ESIDREQDNAKPHISPFDPDILA-AGLEGGWSIRLIFQPPNSPDLNVLDLGLFASIQSLQYRIPIYKFTDLIDAVDDAYKTMSADTLDDIFLTLQSYMLCILKEDGGNQY 319          
BLAST of mRNA_H-paniculata_contig2657.7255.1 vs. uniprot
Match: UPI00053F8527 (uncharacterized protein LOC104897330 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F8527)

HSP 1 Score: 76.6 bits (187), Expect = 6.310e-14
Identity = 39/116 (33.62%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   10 WLDG--EKVIAQEDGATPHTDKGTPQASNNAGTDGGWRVKLVTQPAQSPDLNINDLGIFASLKSRVWGERYGTVDDLVDGVKSMYDAYNVDTLERVWQSLFERYKQVLRAIGGNDF 351
            W +G  +++  Q+D A PH     PQ    A T  G+ ++L+ QPAQSPDLN+ DLG F ++++  +      +D+L+  V+  YD ++ + L+  W  L     ++L+  GGN+F
Sbjct:  358 WPEGVSKEIYIQQDNARPHIHASDPQFIA-AATQNGFNIQLINQPAQSPDLNVLDLGFFRAIQALQYQSFPKNLDELILRVQDCYDFFDPEVLKYTWLQLQYVMVEILKCKGGNNF 472          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2657.7255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE6.990e-2663.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3GU94_9STRA2.130e-2136.97Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2FC44_9STRA5.270e-1638.39Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A081AWC8_PHYPR4.370e-1536.84Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
UPI00104066C44.610e-1535.14uncharacterized protein LOC114370211 n=1 Tax=Glyci... [more]
UPI00053F72365.480e-1531.82uncharacterized protein LOC104908485 n=1 Tax=Beta ... [more]
A0A6G0X8U9_9STRA1.790e-1438.68Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI001C26D6512.530e-1439.81uncharacterized protein LOC121757666 n=1 Tax=Salvi... [more]
W2QBI0_PHYPN4.490e-1435.45Uncharacterized protein n=9 Tax=Phytophthora paras... [more]
UPI00053F85276.310e-1433.62uncharacterized protein LOC104897330 n=1 Tax=Beta ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2657contigH-paniculata_contig2657:4383..4736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog4792.ETI44833
Hectar predicted targeting categoryother localisation
EggNOG OGs2EP7I@1,2SSFX@2759,3QHT7@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size354
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929796.802671-CDS-H-paniculata_contig2657:4382..47331622929796.802671-CDS-H-paniculata_contig2657:4382..4733Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2657 4383..4733 -
1691481014.8807821-CDS-H-paniculata_contig2657:4382..47331691481014.8807821-CDS-H-paniculata_contig2657:4382..4733Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2657 4383..4733 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929796.821667-UTR-H-paniculata_contig2657:4733..47361622929796.821667-UTR-H-paniculata_contig2657:4733..4736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2657 4734..4736 -
1691481014.889654-UTR-H-paniculata_contig2657:4733..47361691481014.889654-UTR-H-paniculata_contig2657:4733..4736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2657 4734..4736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2657.7255.1prot_H-paniculata_contig2657.7255.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2657 4383..4733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2657.7255.1

>prot_H-paniculata_contig2657.7255.1 ID=prot_H-paniculata_contig2657.7255.1|Name=mRNA_H-paniculata_contig2657.7255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MWWLDGEKVIAQEDGATPHTDKGTPQASNNAGTDGGWRVKLVTQPAQSPD
LNINDLGIFASLKSRVWGERYGTVDDLVDGVKSMYDAYNVDTLERVWQSL
FERYKQVLRAIGGNDF*
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mRNA from alignment at H-paniculata_contig2657:4383..4736-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2657.7255.1 ID=mRNA_H-paniculata_contig2657.7255.1|Name=mRNA_H-paniculata_contig2657.7255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at H-paniculata_contig2657:4383..4736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGATGTGGTGGCTCGATGGGGAGAAGGTCATCGCGCAAGAAGATGGTGC GACGCCCCACACGGACAAGGGTACACCACAGGCCTCAAACAACGCGGGGA CGGACGGAGGGTGGAGGGTGAAGCTCGTAACGCAGCCTGCGCAATCGCCG GATCTCAACATCAACGATTTGGGAATTTTTGCGTCTCTGAAGAGTAGGGT GTGGGGAGAGCGTTACGGCACGGTCGATGACCTTGTAGATGGAGTAAAGA GCATGTACGACGCCTATAATGTAGACACGTTGGAGAGAGTATGGCAAAGT CTGTTCGAGAGGTACAAGCAGGTTTTGCGAGCCATAGGAGGGAACGATTT CTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2657:4383..4736-

>mRNA_H-paniculata_contig2657.7255.1 ID=mRNA_H-paniculata_contig2657.7255.1|Name=mRNA_H-paniculata_contig2657.7255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig2657:4383..4736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGTGGCTCGATGGGGAGAAGGTCATCGCGCAAGAAGATGGTGCGAC
GCCCCACACGGACAAGGGTACACCACAGGCCTCAAACAACGCGGGGACGG
ACGGAGGGTGGAGGGTGAAGCTCGTAACGCAGCCTGCGCAATCGCCGGAT
CTCAACATCAACGATTTGGGAATTTTTGCGTCTCTGAAGAGTAGGGTGTG
GGGAGAGCGTTACGGCACGGTCGATGACCTTGTAGATGGAGTAAAGAGCA
TGTACGACGCCTATAATGTAGACACGTTGGAGAGAGTATGGCAAAGTCTG
TTCGAGAGGTACAAGCAGGTTTTGCGAGCCATAGGAGGGAACGATTTCTA
GATGTGGTGGCTCGATGGGGAGAAGGTCATCGCGCAAGAAGATGGTGCGA
CGCCCCACACGGACAAGGGTACACCACAGGCCTCAAACAACGCGGGGACG
GACGGAGGGTGGAGGGTGAAGCTCGTAACGCAGCCTGCGCAATCGCCGGA
TCTCAACATCAACGATTTGGGAATTTTTGCGTCTCTGAAGAGTAGGGTGT
GGGGAGAGCGTTACGGCACGGTCGATGACCTTGTAGATGGAGTAAAGAGC
ATGTACGACGCCTATAATGTAGACACGTTGGAGAGAGTATGGCAAAGTCT
GTTCGAGAGGTACAAGCAGGTTTTGCGAGCCATAGGAGGGAACGATTTCT
AG
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