mRNA_H-paniculata_contig26541.7250.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26541.7250.1
Unique NamemRNA_H-paniculata_contig26541.7250.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26541.7250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26541contigH-paniculata_contig26541:2147..2604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26541.7250.1prot_H-paniculata_contig26541.7250.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26541 2147..2481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929796.127709-CDS-H-paniculata_contig26541:2146..23001622929796.127709-CDS-H-paniculata_contig26541:2146..2300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26541 2147..2300 +
1691481014.5609245-CDS-H-paniculata_contig26541:2146..23001691481014.5609245-CDS-H-paniculata_contig26541:2146..2300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26541 2147..2300 +
1622929796.1387255-CDS-H-paniculata_contig26541:2413..24811622929796.1387255-CDS-H-paniculata_contig26541:2413..2481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26541 2414..2481 +
1691481014.5799735-CDS-H-paniculata_contig26541:2413..24811691481014.5799735-CDS-H-paniculata_contig26541:2413..2481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26541 2414..2481 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929796.1553285-UTR-H-paniculata_contig26541:2481..26041622929796.1553285-UTR-H-paniculata_contig26541:2481..2604Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26541 2482..2604 +
1691481014.5973058-UTR-H-paniculata_contig26541:2481..26041691481014.5973058-UTR-H-paniculata_contig26541:2481..2604Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26541 2482..2604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26541.7250.1

>prot_H-paniculata_contig26541.7250.1 ID=prot_H-paniculata_contig26541.7250.1|Name=mRNA_H-paniculata_contig26541.7250.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
PQGVGWRACVLADPSRILGAYLSQSHVEHGVLQQRWVVEGCTGRSLPSCF
RLVNEKPIPGGGGDVDGAVVVES*
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mRNA from alignment at H-paniculata_contig26541:2147..2604+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26541.7250.1 ID=mRNA_H-paniculata_contig26541.7250.1|Name=mRNA_H-paniculata_contig26541.7250.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=458bp|location=Sequence derived from alignment at H-paniculata_contig26541:2147..2604+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATGTTGTCGAACAGCTGGTTGTCAATAAAATGGTTAGACGCTCCGCTG
TCCGCTATCATGCAGAACTTGATTAATGAACTGGGAGTCGGCTTCGCGTA
GGTGTTGGATTCTTCAGTGGTGAACGAAAAACCGATACCGGGCGGTGGCG
GTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGAGTAGTCGAAGCACTG
AACGCAGTCGGAGTGTTGTACGTAGGAGGTACTGTAGTGGCGGCCGGGTC
GATGGCGGTGTTGGCTTGGTACGGGGGGCTGCTCTGTTGATGCTGTCCAT
GCTGAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig26541:2147..2604+

>mRNA_H-paniculata_contig26541.7250.1 ID=mRNA_H-paniculata_contig26541.7250.1|Name=mRNA_H-paniculata_contig26541.7250.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig26541:2147..2604+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATCCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGC
GAATACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTG
CAGCAGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTG
CTTTCGATTGGTGAACGAAAAACCGATACCGGGCGGTGGCGGTGACGTGG
ATGGTGCGGTAGTTGTCGAAAGTTGATGGTGAACGAAAAACCGATACCGG
GCGGTGGCGGTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGA
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