mRNA_H-paniculata_contig26534.7245.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26534.7245.1
Unique NamemRNA_H-paniculata_contig26534.7245.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26534.7245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26534contigH-paniculata_contig26534:3..360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog2880.D7FU35
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size359
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.699101-CDS-H-paniculata_contig26534:2..3591622929795.699101-CDS-H-paniculata_contig26534:2..359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26534 3..359 +
1691481014.3537664-CDS-H-paniculata_contig26534:2..3591691481014.3537664-CDS-H-paniculata_contig26534:2..359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26534 3..359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26534.7245.1prot_H-paniculata_contig26534.7245.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26534 3..359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26534.7245.1

>prot_H-paniculata_contig26534.7245.1 ID=prot_H-paniculata_contig26534.7245.1|Name=mRNA_H-paniculata_contig26534.7245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
LCGHDNSLAECGLEGKGYRIEIPRTWVKKSVPFAKALLVVLNITLKSFAG
LSIPIEDIAGADEQLLGKVFSSIMEDAAEILIDEACSAGEERLDEVRATG
ENLEQSTVADGRQGVGSSN
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mRNA from alignment at H-paniculata_contig26534:3..360+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26534.7245.1 ID=mRNA_H-paniculata_contig26534.7245.1|Name=mRNA_H-paniculata_contig26534.7245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=358bp|location=Sequence derived from alignment at H-paniculata_contig26534:3..360+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTGTGGACACGACAACAGCCTTGCAGAATGTGGGCTTGAAGGAAAGGG
ATACCGGATAGAGATTCCGCGAACGTGGGTGAAAAAGAGTGTCCCGTTCG
CCAAGGCCCTGCTGGTCGTCCTAAATATCACGCTGAAGAGCTTCGCAGGA
TTGAGCATTCCCATTGAAGATATCGCAGGTGCAGATGAACAATTGTTGGG
CAAAGTCTTCTCATCGATAATGGAGGATGCGGCAGAAATATTGATAGACG
AAGCTTGCTCTGCTGGGGAAGAGCGCCTTGATGAAGTACGGGCGACAGGG
GAAAATCTGGAACAGAGCACCGTCGCGGATGGTCGTCAAGGCGTGGGTAG
TTCGAATG
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Coding sequence (CDS) from alignment at H-paniculata_contig26534:3..360+

>mRNA_H-paniculata_contig26534.7245.1 ID=mRNA_H-paniculata_contig26534.7245.1|Name=mRNA_H-paniculata_contig26534.7245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig26534:3..360+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTGTGGACACGACAACAGCCTTGCAGAATGTGGGCTTGAAGGAAAGGG
ATACCGGATAGAGATTCCGCGAACGTGGGTGAAAAAGAGTGTCCCGTTCG
CCAAGGCCCTGCTGGTCGTCCTAAATATCACGCTGAAGAGCTTCGCAGGA
TTGAGCATTCCCATTGAAGATATCGCAGGTGCAGATGAACAATTGTTGGG
CAAAGTCTTCTCATCGATAATGGAGGATGCGGCAGAAATATTGATAGACG
AAGCTTGCTCTGCTGGGGAAGAGCGCCTTGATGAAGTACGGGCGACAGGG
GAAAATCTGGAACAGAGCACCGTCGCGGATGGTCGTCAAGGCGTGGGTAG
TTCGAATCTCTGTGGACACGACAACAGCCTTGCAGAATGTGGGCTTGAAG
GAAAGGGATACCGGATAGAGATTCCGCGAACGTGGGTGAAAAAGAGTGTC
CCGTTCGCCAAGGCCCTGCTGGTCGTCCTAAATATCACGCTGAAGAGCTT
CGCAGGATTGAGCATTCCCATTGAAGATATCGCAGGTGCAGATGAACAAT
TGTTGGGCAAAGTCTTCTCATCGATAATGGAGGATGCGGCAGAAATATTG
ATAGACGAAGCTTGCTCTGCTGGGGAAGAGCGCCTTGATGAAGTACGGGC
GACAGGGGAAAATCTGGAACAGAGCACCGTCGCGGATGGTCGTCAAGGCG
TGGGTAGTTCGAAT
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