mRNA_H-paniculata_contig26510.7239.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26510.7239.1
Unique NamemRNA_H-paniculata_contig26510.7239.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26510.7239.1 vs. uniprot
Match: D7FXL4_ECTSI (Mitochondrial intermediate peptidase (N-terminal) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL4_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.660e-14
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 LRHSTEGVLGTVYLDLHRRDGKYGHAAHFTVRCGC 105
            LRH  EGVLGT+YLDLHRR+GK+GHAAHFTVRCGC
Sbjct:  525 LRHEQEGVLGTIYLDLHRREGKFGHAAHFTVRCGC 559
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BLAST of mRNA_H-paniculata_contig26510.7239.1 vs. uniprot
Match: A0A7S2EXV2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXV2_TRICV)

HSP 1 Score: 68.6 bits (166), Expect = 1.790e-12
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    7 HSTEGVLGTVYLDLHRRDGKYGHAAHFTVRCGCVV 111
            H  EG LGT+YLDLH R+GKYGHAAHFTVRCGC V
Sbjct:  505 HPEEGPLGTLYLDLHPREGKYGHAAHFTVRCGCAV 539
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BLAST of mRNA_H-paniculata_contig26510.7239.1 vs. uniprot
Match: B7GDX9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GDX9_PHATC)

HSP 1 Score: 66.2 bits (160), Expect = 1.170e-11
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 LRHSTEGVLGTVYLDLHRRDGKYGHAAHFTVRCGCVV 111
            L  ST   LGT+YLDLH R+GKYGHAAHFTVRCGCV+
Sbjct:  478 LEKSTGRKLGTIYLDLHPREGKYGHAAHFTVRCGCVL 514
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BLAST of mRNA_H-paniculata_contig26510.7239.1 vs. uniprot
Match: A0A7S0AZD0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AZD0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.890e-10
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 LRHSTEGVLGTVYLDLHRRDGKYGHAAHFTVRCGCVV 111
            L H  EG LG +Y+DLH R+GKY HAAHFTVRCGC +
Sbjct:   94 LSHEEEGSLGILYMDLHPREGKYAHAAHFTVRCGCQM 130
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BLAST of mRNA_H-paniculata_contig26510.7239.1 vs. uniprot
Match: A0A7S1D836_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D836_CYCTE)

HSP 1 Score: 61.2 bits (147), Expect = 3.110e-10
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    7 HSTEGVLGTVYLDLHRRDGKYGHAAHFTVRCGCVV 111
            H     +GT+Y DLH R+GKYGHAAHFTVRCGC V
Sbjct:   41 HENGNEIGTMYFDLHPREGKYGHAAHFTVRCGCSV 75
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BLAST of mRNA_H-paniculata_contig26510.7239.1 vs. uniprot
Match: K0RY32_THAOC (Peptidase_M3 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RY32_THAOC)

HSP 1 Score: 62.0 bits (149), Expect = 3.630e-10
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    4 RHSTEGVLGTVYLDLHRRDGKYGHAAHFTVRCG 102
            RH  EG LGT+YLDLH R GK+GHAAHFT+RCG
Sbjct:  297 RHGDEGPLGTMYLDLHPRPGKFGHAAHFTIRCG 329
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BLAST of mRNA_H-paniculata_contig26510.7239.1 vs. uniprot
Match: A0A7S1VXM5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VXM5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.770e-10
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    7 HSTEGVLGTVYLDLHRRDGKYGHAAHFTVRCGC 105
            H  EG LGT+YLDLH R GKY HAAHFT+RCGC
Sbjct:  443 HDEEGPLGTMYLDLHPRRGKYVHAAHFTIRCGC 475
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BLAST of mRNA_H-paniculata_contig26510.7239.1 vs. uniprot
Match: A0A7S2GHQ2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GHQ2_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 8.640e-10
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 LRHSTEGVLGTVYLDLHRRDGKYGHAAHFTVRCGCVV 111
            LRH ++G LG VYLDL  R GKYGHAAHFTVRCG  +
Sbjct:  256 LRHPSQGPLGIVYLDLAPRQGKYGHAAHFTVRCGRAI 292
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BLAST of mRNA_H-paniculata_contig26510.7239.1 vs. uniprot
Match: A0A7S1URJ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1URJ1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.870e-9
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   16 EGVLGTVYLDLHRRDGKYGHAAHFTVRCGCVV 111
            E  LGT+YLDL+ R+GKYGHAAHFTVRCGC  
Sbjct:  157 EQPLGTLYLDLYPREGKYGHAAHFTVRCGCAT 188
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BLAST of mRNA_H-paniculata_contig26510.7239.1 vs. uniprot
Match: A0A7S2RIB0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIB0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.250e-9
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 LRHSTEGVLGTVYLDLHRRDGKYGHAAHFTVRCGCVV 111
            L H++ G LGT++LDLH R  KY H+AHFTVRCGC V
Sbjct:  147 LSHASHGPLGTIFLDLHPRQQKYFHSAHFTVRCGCKV 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26510.7239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXL4_ECTSI1.660e-1485.71Mitochondrial intermediate peptidase (N-terminal) ... [more]
A0A7S2EXV2_TRICV1.790e-1280.00Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B7GDX9_PHATC1.170e-1175.68Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S0AZD0_9STRA1.890e-1067.57Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1D836_CYCTE3.110e-1068.57Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
K0RY32_THAOC3.630e-1075.76Peptidase_M3 domain-containing protein n=1 Tax=Tha... [more]
A0A7S1VXM5_9STRA6.770e-1075.76Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2GHQ2_9STRA8.640e-1070.27Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A7S1URJ1_9STRA1.870e-975.00Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S2RIB0_9STRA3.250e-964.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26510contigH-paniculata_contig26510:401..1458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue7.9e-12
Seed eggNOG ortholog2880.D7FXL4
KEGG koko:K01410
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein processing involved in protein targeting to mitochondrion
EggNOG OGsCOG0339@1,KOG2090@2759
EC3.4.24.59
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029
Exons2
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929794.9698186-CDS-H-paniculata_contig26510:400..4531622929794.9698186-CDS-H-paniculata_contig26510:400..453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26510 401..453 +
1691481014.0303957-CDS-H-paniculata_contig26510:400..4531691481014.0303957-CDS-H-paniculata_contig26510:400..453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26510 401..453 +
1622929794.9811187-CDS-H-paniculata_contig26510:1397..14581622929794.9811187-CDS-H-paniculata_contig26510:1397..1458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26510 1398..1458 +
1691481014.0400321-CDS-H-paniculata_contig26510:1397..14581691481014.0400321-CDS-H-paniculata_contig26510:1397..1458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26510 1398..1458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26510.7239.1prot_H-paniculata_contig26510.7239.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26510 401..1458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26510.7239.1

>prot_H-paniculata_contig26510.7239.1 ID=prot_H-paniculata_contig26510.7239.1|Name=mRNA_H-paniculata_contig26510.7239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp
LRHSTEGVLGTVYLDLHRRDGKYGHAAHFTVRCGCVVH
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mRNA from alignment at H-paniculata_contig26510:401..1458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26510.7239.1 ID=mRNA_H-paniculata_contig26510.7239.1|Name=mRNA_H-paniculata_contig26510.7239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1058bp|location=Sequence derived from alignment at H-paniculata_contig26510:401..1458+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCGGCACAGCACGGAGGGAGTCTTGGGCACGGTTTATCTAGACTTGCA
CAGGTCTGGCTTTTGGATTCTTTCTTTCTTCGACATTAAAAAAAAAAAAA
GAAAAAAAAGGAAAAAAAAAAAGGAATGCTTCACAAATCTTTTTCGTTTT
TGTTTGTTTGTTTATTTGTTTGTTATAGAGGGATGATGGATCGAGCCAAA
GGGCGTTCACTTTGCTTTGGAAGTAGGTGTAGAGTCTGTTTTGTTCCGAC
AAGGTGCTCTTTTTTGTTAATGCTGTGCCATCGGCACCGATATGGTACCA
GATATATCGGTGTATATACGGGGATACATTGTACAGTATATCGCATCGTT
TCATTGAGGGGGCACCAATGTATCGGCGGTTGCCGTTTCCGGTTATATAT
AGTACGATGTATCTGTCATTTTCCATGAAAAGTTGCCATAATTTACCTGT
CTGTCACGTCTTGGGGCTGTCTATCAGCTGTGTATCGGTACTACCATCCA
CAGCAGCACGCCGCACTTTGATTGATACTCCGCAACCACAATATCATAGC
ACATACATGGTGCTGGAGTACACAAAATTGAAACTTCCATCGCCGTGCAC
AACAACTCTACTGTATGTTGCAATACGTGTCCAACTAGCAACAAGCGCAA
GGCGAAACTTTTTTAGTCTCTTAAAAAGCTAGGAGGCAACCTGCGCCCAA
CACCTACCCCGAGACCGGGTTCGTGCGCGGGTTACCCTATGGCCCGGCTA
GCCCATCTTACGGTGGTCATATGAGATAGGCACCCTGAACGTTCGCGTGG
CTTTGCTCAGGTTAGCGTGGAGGTCTCACCCACAAAACCTTGCTGCTCAG
CTTGGTGCAGAGTACGCTCCGCCCTGCTTGATTGAGCTTCGGCCTTTGAA
GGCGAAACCAATCCCTTGCAAGTGAGCAAGAGAGCTAAGTACATCCCCTT
CTTCGTGCGTTTGGAACATGACTACATTGTCATGTTGATACTTGCAGGAG
GGACGGCAAGTATGGCCACGCGGCGCATTTCACCGTCCGTTGCGGCTGTG
TCGTTCAT
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Coding sequence (CDS) from alignment at H-paniculata_contig26510:401..1458+

>mRNA_H-paniculata_contig26510.7239.1 ID=mRNA_H-paniculata_contig26510.7239.1|Name=mRNA_H-paniculata_contig26510.7239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at H-paniculata_contig26510:401..1458+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCGGCACAGCACGGAGGGAGTCTTGGGCACGGTTTATCTAGACTTGCA
CAGTTGCGGCACAGCACGGAGGGAGTCTTGGGCACGGTTTATCTAGACTT
GCACAGGAGGGACGGCAAGTATGGCCACGCGGCGCATTTCACCGTCCGTT
GCGGCTGTGTCGTTCATGAGGGACGGCAAGTATGGCCACGCGGCGCATTT
CACCGTCCGTTGCGGCTGTGTCGTTCAT
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