mRNA_H-paniculata_contig2650.7237.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2650.7237.1
Unique NamemRNA_H-paniculata_contig2650.7237.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2650.7237.1 vs. uniprot
Match: A0A6H5KM13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM13_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.460e-35
Identity = 63/108 (58.33%), Postives = 85/108 (78.70%), Query Frame = 2 
Query:    2 RSDRDMLEGCPLLKQLSGRRFVPVGLHVGRFAEKEWTHYGFLLIAGLFQVAEWVSNEAVNHEQAAEARKGSIKISYRRAMHQRTLAHLSDVV----VAAGPDASSSDG 313
            R DRDM+EGCPLLK++ GR++VPVGLH+GR++EKEWTH+G LL++G+ Q+ EW+++E V  E+ AEAR G +K SYR+ M +RT AHLSDVV    V + P A+S DG
Sbjct:  218 RGDRDMVEGCPLLKKIGGRKYVPVGLHLGRYSEKEWTHHGLLLLSGMHQMGEWLAHERVKKERTAEARIGGVKTSYRKLMQERTKAHLSDVVAEATVRSKPHANSGDG 325
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BLAST of mRNA_H-paniculata_contig2650.7237.1 vs. uniprot
Match: D7FV17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV17_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.960e-8
Identity = 24/35 (68.57%), Postives = 32/35 (91.43%), Query Frame = 2 
Query:    2 RSDRDMLEGCPLLKQLSGRRFVPVGLHVGRFAEKE 106
            R DRDM+EGCPLLK++ GR++VPVGLH+GR++E E
Sbjct:  218 RGDRDMVEGCPLLKKIGGRKYVPVGLHLGRYSEGE 252
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2650.7237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KM13_9PHAE1.460e-3558.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV17_ECTSI2.960e-868.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2650contigH-paniculata_contig2650:14608..16655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size364
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2650.7237.1prot_H-paniculata_contig2650.7237.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2650 14608..16639 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929794.569727-CDS-H-paniculata_contig2650:14607..147511622929794.569727-CDS-H-paniculata_contig2650:14607..14751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2650 14608..14751 -
1691481013.8736963-CDS-H-paniculata_contig2650:14607..147511691481013.8736963-CDS-H-paniculata_contig2650:14607..14751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2650 14608..14751 -
1622929794.5823836-CDS-H-paniculata_contig2650:15975..160971622929794.5823836-CDS-H-paniculata_contig2650:15975..16097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2650 15976..16097 -
1691481013.883528-CDS-H-paniculata_contig2650:15975..160971691481013.883528-CDS-H-paniculata_contig2650:15975..16097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2650 15976..16097 -
1622929794.5959105-CDS-H-paniculata_contig2650:16557..166391622929794.5959105-CDS-H-paniculata_contig2650:16557..16639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2650 16558..16639 -
1691481013.8932576-CDS-H-paniculata_contig2650:16557..166391691481013.8932576-CDS-H-paniculata_contig2650:16557..16639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2650 16558..16639 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929794.6118658-UTR-H-paniculata_contig2650:16639..166551622929794.6118658-UTR-H-paniculata_contig2650:16639..16655Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2650 16640..16655 -
1691481013.9011667-UTR-H-paniculata_contig2650:16639..166551691481013.9011667-UTR-H-paniculata_contig2650:16639..16655Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2650 16640..16655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2650.7237.1

>prot_H-paniculata_contig2650.7237.1 ID=prot_H-paniculata_contig2650.7237.1|Name=mRNA_H-paniculata_contig2650.7237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MLEGCPLLKQLSGRRFVPVGLHVGRFAEKEWTHYGFLLIAGLFQVAEWVS
NEAVNHEQAAEARKGSIKISYRRAMHQRTLAHLSDVVVAAGPDASSSDGK
RGGKLQHLNQEGWRQ*
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mRNA from alignment at H-paniculata_contig2650:14608..16655-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2650.7237.1 ID=mRNA_H-paniculata_contig2650.7237.1|Name=mRNA_H-paniculata_contig2650.7237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2048bp|location=Sequence derived from alignment at H-paniculata_contig2650:14608..16655- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCAGTGACCGTGACATGCTCGAGGGTTGTCCGTTGCTCAAGCAATTAT
CCGGTCGAAGGTTCGTGCCTGTCGGCCTACACGTCGGACGCTTTGCAGGT
GGGCAAGTACTGATCCTAGATGCTTGGTAGACTTTCGGATAGGAGCATGG
ATGGCATCATTGTGGCGATAACTGCGTTTCTTGGTTTTCCTCGGGGGTAG
AACAGTCCGCTGTACCAACCTTACCGTCGAATTCCAAGGCAATGACGTTA
TATTGTTTGGAAGGTTTTCCATGTTTCGAAACATTTCCGGGAGAACGTTC
CGTACGTAGTAATTTCTTTAGCCCTTGTCAGGATTTCGGGTTTCCCGATG
TTCAACCCCGTTGTGTTTGGTAGAGCCCCGCACTGTTTTAATACAATATG
CTCTACAGGAAAGAACAACGGAACTGCAGCTGCACAACAATCGTGGGGGT
GTTGACCGTCGTTTCAGTCACGGGGCTCCAGATATCAGCAAGACAAAGCC
CATTACATACACCATACACACCTCACACCCGGCTGTTGATGAATCAACGA
ACGCGCAGAGAAGGAGTGGACGCACTATGGATTTCTACTAATCGCGGGGC
TGTTTCAGGTAGCCGAGTGGGTTAGCAACGAAGCGGTCAACCATGAGCAA
GCAGCGGAGGCACGCAAAGGGAGTATCAAGGTACTTGCCAATTGCCCGCC
TCGCGTTTCACTGGAAAAATACCCAGTACTGGCAAATCTTTCGTTCTGTG
GGATAGCTTCTGTTCGACTTTAGATTAGTAGGGGAACCATAAGAAGGGCT
TTACAGTTGATTGTCAACTATGGCCCATTATCTCATACTAGAGAGTCCCT
CACACAATCATGTGCGAGTGCAATTCAGCTTTTTGTGTAACCCTTTTCTA
CCATCAAGCATGATCTCATGATCTGGTCAACCACGAATTGATGGTTCCTA
CGCAGCCCCCTTAGCATCACAGCAACAAACAGATACTACTGTAGACCTAG
GGGATGTCCTATCGTCGTCAATCTGTACAGGCCATGTCTCGACTACCAAG
TGCCCCACACAGTACTATCACACGCTACGGTAATTTTCTACTACGCCCAC
ATATGCGCCTCAACATGATGCGAATTCAAGGGTGTTTGGCTATAGAACAG
CATAACAAACAACACCAAGCTGGTGGTGCAATGTGCCCTTCGCTGAACAA
ACACGTAGCTCTATTTCTTAAATCTCCTTGCTTGGCGGTTTTTATGCATC
GTAAATATCCGCTCCCTCCTCCTCTGTTGGTGATGTATGCTATCACAAGG
CAATGCGATAGAGGCTAGTACCTTGGGTCGCTGTTAGGTTACGCCCCTAG
ATAAGTACTCAGTAGTGTTGTTGACTGCAGGGGGGCACCCTGTGTAGAGA
GCCGCTGGCACAATCACTGGAATGCTGTTGATATTTGTAGAGAAAAGAAT
GCTGCTCCTAGGGCAAATGATTATGAAGGAGTGAGAGCAGGGGCGTGGAC
CATCGTGCTCAGTTAACACCGTCTACAGAAATCCTGCTGTTGGTCGAGAT
CTATTGTACTGTACGTTCTCGAGAACGGTTCTCAAGAAACAAAGTTCTCG
GAACTGCTTCTCGGACAATCGTAAAGATGTTTCGTTTCGACAACAAGCCA
TTCAACCGCATTTCCGACAGTTACACGGACCAACTTACTACGAAGCAACG
CCATGCTACTGAGCATTGATTAGATACGTCAAATACTCATCTATCCACAA
CTGACTGTGTTACTGATCATCGACGCATAAGATAGACTACAAAGTACCTA
TCGCTAACATTCTTTATTCCCACCCACCCTCTCGAAGGTCTTGCCCATTT
CCACATCCGCCCCCCCTATTCTCCATCATTTCCATTGCCTCAATTTTGAG
CAAGATCTCGTACCGCAGAGCGATGCACCAGAGAACGCTGGCTCATCTGT
CAGATGTTGTGGTAGCTGCTGGTCCGGATGCTTCTTCTTCTGACGGAAAG
CGAGGGGGGAAACTGCAGCACCTGAACCAGGAAGGTTGGCGTCAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2650:14608..16655-

>mRNA_H-paniculata_contig2650.7237.1 ID=mRNA_H-paniculata_contig2650.7237.1|Name=mRNA_H-paniculata_contig2650.7237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig2650:14608..16655- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCGAGGGTTGTCCGTTGCTCAAGCAATTATCCGGTCGAAGGTTCGT
GCCTGTCGGCCTACACGTCGGACGCTTTGCAGATGCTCGAGGGTTGTCCG
TTGCTCAAGCAATTATCCGGTCGAAGGTTCGTGCCTGTCGGCCTACACGT
CGGACGCTTTGCAGAGAAGGAGTGGACGCACTATGGATTTCTACTAATCG
CGGGGCTGTTTCAGGTAGCCGAGTGGGTTAGCAACGAAGCGGTCAACCAT
GAGCAAGCAGCGGAGGCACGCAAAGGGAGTATCAAGAGAAGGAGTGGACG
CACTATGGATTTCTACTAATCGCGGGGCTGTTTCAGGTAGCCGAGTGGGT
TAGCAACGAAGCGGTCAACCATGAGCAAGCAGCGGAGGCACGCAAAGGGA
GTATCAAGATCTCGTACCGCAGAGCGATGCACCAGAGAACGCTGGCTCAT
CTGTCAGATGTTGTGGTAGCTGCTGGTCCGGATGCTTCTTCTTCTGACGG
AAAGCGAGGGGGGAAACTGCAGCACCTGAACCAGGAAGGTTGGCGTCAAT
GAATCTCGTACCGCAGAGCGATGCACCAGAGAACGCTGGCTCATCTGTCA
GATGTTGTGGTAGCTGCTGGTCCGGATGCTTCTTCTTCTGACGGAAAGCG
AGGGGGGAAACTGCAGCACCTGAACCAGGAAGGTTGGCGTCAATGA
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