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Homology
BLAST of mRNA_H-paniculata_contig265.7234.1 vs. uniprot
Match: A0A7S2MHM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHM4_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.660e-10 Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 2
Query: 1409 PLFKTLRAGELVQARYTADDKWYSAVICQVIHSGFQIARYKVRYTEYENEETISWTRI 1582
PL+K LR G+ VQAR++ D +Y AV+ QVIH GF IA+Y V YT Y N E +SW I
Sbjct: 40 PLWKRLRVGDQVQARFSEDRTYYEAVVKQVIHGGFAIAKYTVLYTAYGNSEVVSWKDI 97
BLAST of mRNA_H-paniculata_contig265.7234.1 vs. uniprot
Match: A0A836CA01_9STRA (Tudor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA01_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.820e-10 Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 2
Query: 1409 PLFKTLRAGELVQARYTADDKWYSAVICQVIHSGFQIARYKVRYTEYENEETISWTRIK 1585
PL+ L+ G+ V+A+YT DD WY+A + QVIHSG+ I + KV YT+Y N+ETI W R++
Sbjct: 568 PLYARLKLGDAVEAQYTEDDTWYAAKVLQVIHSGYSICKVKVEYTQYGNQETILWKRVR 626
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 2215 |
| Cds size | 2073 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig265.7234.1 >prot_H-paniculata_contig265.7234.1 ID=prot_H-paniculata_contig265.7234.1|Name=mRNA_H-paniculata_contig265.7234.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=691bp
MDVSGFTEDDQARIADEVHARARSKRVGLGFGVSATSNVDNPPPSEEPSS SRSSAWFHEARNATHFEDAEDENTDTTKGVFPWDGGRRDKPEAARWGVHF GGERSAPRATEEAATTGRPQERDFPMVRDRDIEYSKVGSDTHSRRRGEKR EADSGRRRRRSRSTSRDRQIERRRDKWERERERERDRRRERGGGRDRDRD RFSGGRRSRSRDRDSLNRSRDHRHDRARDVDPSNNPTDSALANAAPANSG KRGSTLPSAKQAKASLKRRLKEAVAGDATLKMGFKASLGGGGGWERAEMA EAADFFTNDEVAAKGEVASVAPEYEARMAEIRAIEDEDIMCLGDEVRKPS AATVHGLGGPTSIDSVVQKHHDAIFSPTGSSPNHNEFLADPAQTLALQQT GPDANRENTRVFSAGVVGAAARARLALTGKSGEMPKVTKQTRVSTRTRSE ERSFVEKDEKEEPLFKTLRAGELVQARYTADDKWYSAVICQVIHSGFQIA RYKVRYTEYENEETISWTRIKRSELEQAPPPLPTPKVAIALVSIPSPKPG PSGTDVEPRERSSVEFAGLRPRSLGVEHSTLQSRLPGDKSELATPDEDIA DVVINPSLLSSSNPGKKLSWKEKLQARKAAPGSGVDVAPTTSAKKEISLV PDYAAVAQRREQQVDQSLDKSPWRSKVVFGMGGSKAGDRT* back to topmRNA from alignment at H-paniculata_contig265:30299..33122+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig265.7234.1 ID=mRNA_H-paniculata_contig265.7234.1|Name=mRNA_H-paniculata_contig265.7234.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2824bp|location=Sequence derived from alignment at H-paniculata_contig265:30299..33122+ (Halopteris paniculata Hal_grac_a_UBK monoicous) AGGCGCTGGGTTCTCCTAAAACATGGATGTCAGTGGGTTTACGGAGGACG
ACCAAGCCAGAATAGCAGACGAAGTGCACGCCCGTGCGCGCTCAAAGCGG
GTAGGGCTAGGATTTGGTGTAAGCGCAACCTCCAACGTCGACAATCCTCC
TCCATCTGAAGAGCCCTCGTCTTCCCGAAGTTCGGCCTGGTTTCATGAGG
CGCGCAACGCGACACATTTCGAGGATGCCGAAGATGAGAACACGGACACG
ACCAAAGGCGTTTTCCCTTGGGATGGTGGGAGACGCGACAAACCTGAAGC
AGCGAGATGGGGTGTACATTTCGGAGGTGAAAGGTCTGCACCTCGTGCGA
CTGAAGAGGCCGCTACGACTGGCCGCCCACAAGAGCGTGATTTTCCGATG
GTGAGAGATAGAGATATCGAATATAGTAAGGTGGGAAGCGACACGCATAG
CCGCAGAAGGGGTGAAAAGCGGGAGGCAGATTCAGGGAGGCGACGAAGGA
GAAGTAGAAGTACAAGCAGAGACCGGCAGATTGAGCGAAGGAGAGATAAA
TGGGAGCGGGAAAGGGAAAGGGAAAGGGACCGAAGAAGAGAGCGGGGGGG
TGGCAGAGATCGGGACAGGGATCGATTCAGCGGAGGCCGAAGGTCCCGCA
GCAGAGATCGCGATTCCCTCAATAGGTCACGCGACCACCGACACGATCGA
GCTCGTGATGTTGACCCCAGCAATAATCCCACAGATAGTGCACTGGCGAA
TGCAGCGCCAGCGAACTCAGGTAAACGAGGAAGCACGTTGCCCTCGGCGA
AGCAAGCCAAAGCTTCGTTGAAACGACGATTGAAGGAAGCCGTCGCAGGG
GATGCCACTCTCAAAATGGGATTCAAAGCCTCTCTAGGTGGGGGAGGGGG
TTGGGAACGAGCCGAAATGGCCGAGGCAGCAGATTTCTTTACGAACGACG
AGGTGGCGGCAAAGGGAGAAGTAGCCTCGGTGAGAGCATGCGTTGCCGCA
GTTCTTCAATTAATCGGGTAGTAGATAAAGCAGAGTCGAAAATACCCAGA
CCACTTGTTTTTCTTTTTACTTCAGGGTAAATTGAGGGTCAAGTTGTTTT
GAGAGGATTTCTGTCGTGAGTCTTGACGTTCGCCATCTGACCTTGGACAA
GACACGGCATGCTGCCTTTGCTTAACCTGTCTATTTATACATATATTTGT
GTTGACGATCTGACCTTTTGAGTATCCTAGGTGGCTCCCGAGTACGAAGC
GCGGATGGCTGAAATTCGTGCTATCGAAGACGAAGACATCATGTGCCTGG
GTGATGAAGTTCGAAAGCCGTCGGCAGCGACTGTGCACGGCTTGGGCGGC
CCGACAAGCATCGACTCAGTCGTCCAGAAGCACCACGATGCTATATTTTC
GCCAACGGGTTCGTCCCCTAACCATAACGAGTTTTTAGCCGATCCAGCAC
AAACTTTGGCGCTCCAACAAACAGGCCCAGATGCGAACAGAGAGAACACA
AGAGTTTTCTCTGCGGGGGTTGTAGGTGCGGCAGCGAGAGCACGACTCGC
GTTGACGGGCAAGAGCGGAGAAATGCCCAAGGTTACGAAGCAAACGAGGG
TCAGCACACGGACAAGGAGCGAGGAGCGCTCATTTGTTGAGAAGGACGAA
AAGGAAGAGCCACTTTTCAAGACGCTGCGGGTGAGAACTTGGATAATTGC
GGTGTGCCAACACGTGCCAGCACGTGCCGCTTCATTATTTGCATCACGAC
GGTTGCTTTGTTAGCTGGCGAGTATACTGGTGGGATTAGAGGGGCAAAAT
CATGACTATTGCGTGACAATGTTCATTGTTTGCATGGTTGCAGGCTGGAG
AATTAGTGCAAGCACGCTACACCGCTGATGACAAATGGTACTCTGCTGTG
ATTTGTCAAGTCATCCATTCAGGATTTCAAATTGCCAGGTGAGCACCACT
TCGTGTACCTGTAATCACCATAAATAAAGCAAAGTTATTCGCTGTCGTTA
ATTTTCTTTCACAATTGCACTACCGCAAATAAGATACTCGTGGTGATGCT
CATGGAAAAGACCATGATGACTGTATGACTACAGCTTACCCTCGACAAAA
CAGTCGTGCATGCTTCACGCGCGTAATGTTCAGGTATAAGGTCCGCTACA
CTGAATATGAAAACGAGGAAACCATCTCGTGGACAAGAATAAAGCGATCA
GAGTTGGAACAAGCGCCACCACCTCTCCCGACTCCAAAGGTGGCGATTGC
ACTCGTCAGTATCCCTTCTCCTAAACCCGGCCCATCCGGCACGGACGTGG
AACCCAGGGAGAGATCATCGGTGGAGTTTGCCGGGCTACGTCCTCGAAGC
CTTGGCGTCGAGCACAGCACATTGCAGTCGCGGTTGCCAGGAGATAAAAG
TGAACTTGCCACACCAGATGAGGACATTGCAGACGTCGTGATCAATCCGA
GTCTATTATCATCAAGTAACCCGGGCAAGAAACTCTCATGGAAGGAAAAG
CTACAGGCGAGAAAAGCTGCGCCCGGGTCCGGGGTCGACGTTGCTCCTAC
GACTAGTGCAAAAAAGGAAATATCTTTAGTGCCAGATTATGCGGCTGTGG
CTCAGCGGAGGGAGCAACAGGTGGACCAAAGCTTGGACAAAAGCCCGTGG
CGCTCCAAGGTTGTGTTCGGAATGGGGGGTTCGAAAGCGGGGGATCGAAC
TTGAAAATCAACGAACTTCTCTCATATTCCACATACTACCTGTGGATTAT
ATTGAACGTTGTTAAATTTGAGTCCAAGAGGTAGAAGATCATCGTAGAGA
CGAAGTTTCCTAATTGAATAAGCA back to topCoding sequence (CDS) from alignment at H-paniculata_contig265:30299..33122+ >mRNA_H-paniculata_contig265.7234.1 ID=mRNA_H-paniculata_contig265.7234.1|Name=mRNA_H-paniculata_contig265.7234.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4146bp|location=Sequence derived from alignment at H-paniculata_contig265:30299..33122+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGATGTCAGTGGGTTTACGGAGGACGACCAAGCCAGAATAGCAGACGA AGTGCACGCCCGTGCGCGCTCAAAGCGGGTAGGGCTAGGATTTGGTGTAA GCGCAACCTCCAACGTCGACAATCCTCCTCCATCTGAAGAGCCCTCGTCT TCCCGAAGTTCGGCCTGGTTTCATGAGGCGCGCAACGCGACACATTTCGA GGATGCCGAAGATGAGAACACGGACACGACCAAAGGCGTTTTCCCTTGGG ATGGTGGGAGACGCGACAAACCTGAAGCAGCGAGATGGGGTGTACATTTC GGAGGTGAAAGGTCTGCACCTCGTGCGACTGAAGAGGCCGCTACGACTGG CCGCCCACAAGAGCGTGATTTTCCGATGGTGAGAGATAGAGATATCGAAT ATAGTAAGGTGGGAAGCGACACGCATAGCCGCAGAAGGGGTGAAAAGCGG GAGGCAGATTCAGGGAGGCGACGAAGGAGAAGTAGAAGTACAAGCAGAGA CCGGCAGATTGAGCGAAGGAGAGATAAATGGGAGCGGGAAAGGGAAAGGG AAAGGGACCGAAGAAGAGAGCGGGGGGGTGGCAGAGATCGGGACAGGGAT CGATTCAGCGGAGGCCGAAGGTCCCGCAGCAGAGATCGCGATTCCCTCAA TAGGTCACGCGACCACCGACACGATCGAGCTCGTGATGTTGACCCCAGCA ATAATCCCACAGATAGTGCACTGGCGAATGCAGCGCCAGCGAACTCAGGT AAACGAGGAAGCACGTTGCCCTCGGCGAAGCAAGCCAAAGCTTCGTTGAA ACGACGATTGAAGGAAGCCGTCGCAGGGGATGCCACTCTCAAAATGGGAT TCAAAGCCTCTCTAGGTGGGGGAGGGGGTTGGGAACGAGCCGAAATGGCC GAGGCAGCAGATTTCTTTACGAACGACGAGGTGGCGGCAAAGGGAGAAGT AGCCTCGATGGATGTCAGTGGGTTTACGGAGGACGACCAAGCCAGAATAG CAGACGAAGTGCACGCCCGTGCGCGCTCAAAGCGGGTAGGGCTAGGATTT GGTGTAAGCGCAACCTCCAACGTCGACAATCCTCCTCCATCTGAAGAGCC CTCGTCTTCCCGAAGTTCGGCCTGGTTTCATGAGGCGCGCAACGCGACAC ATTTCGAGGATGCCGAAGATGAGAACACGGACACGACCAAAGGCGTTTTC CCTTGGGATGGTGGGAGACGCGACAAACCTGAAGCAGCGAGATGGGGTGT ACATTTCGGAGGTGAAAGGTCTGCACCTCGTGCGACTGAAGAGGCCGCTA CGACTGGCCGCCCACAAGAGCGTGATTTTCCGATGGTGAGAGATAGAGAT ATCGAATATAGTAAGGTGGGAAGCGACACGCATAGCCGCAGAAGGGGTGA AAAGCGGGAGGCAGATTCAGGGAGGCGACGAAGGAGAAGTAGAAGTACAA GCAGAGACCGGCAGATTGAGCGAAGGAGAGATAAATGGGAGCGGGAAAGG GAAAGGGAAAGGGACCGAAGAAGAGAGCGGGGGGGTGGCAGAGATCGGGA CAGGGATCGATTCAGCGGAGGCCGAAGGTCCCGCAGCAGAGATCGCGATT CCCTCAATAGGTCACGCGACCACCGACACGATCGAGCTCGTGATGTTGAC CCCAGCAATAATCCCACAGATAGTGCACTGGCGAATGCAGCGCCAGCGAA CTCAGGTAAACGAGGAAGCACGTTGCCCTCGGCGAAGCAAGCCAAAGCTT CGTTGAAACGACGATTGAAGGAAGCCGTCGCAGGGGATGCCACTCTCAAA ATGGGATTCAAAGCCTCTCTAGGTGGGGGAGGGGGTTGGGAACGAGCCGA AATGGCCGAGGCAGCAGATTTCTTTACGAACGACGAGGTGGCGGCAAAGG GAGAAGTAGCCTCGGTGGCTCCCGAGTACGAAGCGCGGATGGCTGAAATT CGTGCTATCGAAGACGAAGACATCATGTGCCTGGGTGATGAAGTTCGAAA GCCGTCGGCAGCGACTGTGCACGGCTTGGGCGGCCCGACAAGCATCGACT CAGTCGTCCAGAAGCACCACGATGCTATATTTTCGCCAACGGGTTCGTCC CCTAACCATAACGAGTTTTTAGCCGATCCAGCACAAACTTTGGCGCTCCA ACAAACAGGCCCAGATGCGAACAGAGAGAACACAAGAGTTTTCTCTGCGG GGGTTGTAGGTGCGGCAGCGAGAGCACGACTCGCGTTGACGGGCAAGAGC GGAGAAATGCCCAAGGTTACGAAGCAAACGAGGGTCAGCACACGGACAAG GAGCGAGGAGCGCTCATTTGTTGAGAAGGACGAAAAGGAAGAGCCACTTT TCAAGACGCTGCGGGTGGCTCCCGAGTACGAAGCGCGGATGGCTGAAATT CGTGCTATCGAAGACGAAGACATCATGTGCCTGGGTGATGAAGTTCGAAA GCCGTCGGCAGCGACTGTGCACGGCTTGGGCGGCCCGACAAGCATCGACT CAGTCGTCCAGAAGCACCACGATGCTATATTTTCGCCAACGGGTTCGTCC CCTAACCATAACGAGTTTTTAGCCGATCCAGCACAAACTTTGGCGCTCCA ACAAACAGGCCCAGATGCGAACAGAGAGAACACAAGAGTTTTCTCTGCGG GGGTTGTAGGTGCGGCAGCGAGAGCACGACTCGCGTTGACGGGCAAGAGC GGAGAAATGCCCAAGGTTACGAAGCAAACGAGGGTCAGCACACGGACAAG GAGCGAGGAGCGCTCATTTGTTGAGAAGGACGAAAAGGAAGAGCCACTTT TCAAGACGCTGCGGGCTGGAGAATTAGTGCAAGCACGCTACACCGCTGAT GACAAATGGTACTCTGCTGTGATTTGTCAAGTCATCCATTCAGGATTTCA AATTGCCAGGCTGGAGAATTAGTGCAAGCACGCTACACCGCTGATGACAA ATGGTACTCTGCTGTGATTTGTCAAGTCATCCATTCAGGATTTCAAATTG CCAGGTATAAGGTCCGCTACACTGAATATGAAAACGAGGAAACCATCTCG TGGACAAGAATAAAGCGATCAGAGTTGGAACAAGCGCCACCACCTCTCCC GACTCCAAAGGTGGCGATTGCACTCGTCAGTATCCCTTCTCCTAAACCCG GCCCATCCGGCACGGACGTGGAACCCAGGGAGAGATCATCGGTGGAGTTT GCCGGGCTACGTCCTCGAAGCCTTGGCGTCGAGCACAGCACATTGCAGTC GCGGTTGCCAGGAGATAAAAGTGAACTTGCCACACCAGATGAGGACATTG CAGACGTCGTGATCAATCCGAGTCTATTATCATCAAGTAACCCGGGCAAG AAACTCTCATGGAAGGAAAAGCTACAGGCGAGAAAAGCTGCGCCCGGGTC CGGGGTCGACGTTGCTCCTACGACTAGTGCAAAAAAGGAAATATCTTTAG TGCCAGATTATGCGGCTGTGGCTCAGCGGAGGGAGCAACAGGTGGACCAA AGCTTGGACAAAAGCCCGTGGCGCTCCAAGGTTGTGTTCGGAATGGGGGG TTCGAAAGCGGGGGATCGAACTTGAGTATAAGGTCCGCTACACTGAATAT GAAAACGAGGAAACCATCTCGTGGACAAGAATAAAGCGATCAGAGTTGGA ACAAGCGCCACCACCTCTCCCGACTCCAAAGGTGGCGATTGCACTCGTCA GTATCCCTTCTCCTAAACCCGGCCCATCCGGCACGGACGTGGAACCCAGG GAGAGATCATCGGTGGAGTTTGCCGGGCTACGTCCTCGAAGCCTTGGCGT CGAGCACAGCACATTGCAGTCGCGGTTGCCAGGAGATAAAAGTGAACTTG CCACACCAGATGAGGACATTGCAGACGTCGTGATCAATCCGAGTCTATTA TCATCAAGTAACCCGGGCAAGAAACTCTCATGGAAGGAAAAGCTACAGGC GAGAAAAGCTGCGCCCGGGTCCGGGGTCGACGTTGCTCCTACGACTAGTG CAAAAAAGGAAATATCTTTAGTGCCAGATTATGCGGCTGTGGCTCAGCGG AGGGAGCAACAGGTGGACCAAAGCTTGGACAAAAGCCCGTGGCGCTCCAA GGTTGTGTTCGGAATGGGGGGTTCGAAAGCGGGGGATCGAACTTGA back to top
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