mRNA_H-paniculata_contig265.7233.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig265.7233.1 vs. uniprot
Match: A0A6H5JDA2_9PHAE (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDA2_9PHAE) HSP 1 Score: 187 bits (476), Expect = 5.460e-54 Identity = 107/218 (49.08%), Postives = 130/218 (59.63%), Query Frame = 1
Query: 1 IVSKSMHPTLAVGDRVLVDKASITFGKLLTHQNNKDLRRNDIVVFKPPEHSRYLFAQLLGENPSRISLRERMLPWKRRRSG--------QNTRSPLNLAVDFTKRVVAVAGDEVAVHRGLLYVNKILAQPFPRIDTFSRSSSSHGKMSKVSANRHHKGSKASYSWGPTVVPTGHVFVLGDCRDESFDSHMWGPLPVQNVIGRARVRCWPIHRLAWFRR 630
++S SM P LA GDRVLVDKASI GKL LRR DIV+F PPE SR ++A+LL + P RR G + RSPLN ++DFTKRVVAVAGD VAV RG+LYVN+ A+ + ++ASYS+GPTVVP H+ VLGD RD SFDSH+WGPLPV+NVIG AR R WP++R AW +R
Sbjct: 33 VMSCSMQPALAFGDRVLVDKASIILGKLPGRPPGLGLRRGDIVIFSPPEASRNMYAELLRLASGATTATPN--PVGDRRKGHILSLTRCERRRSPLNSSLDFTKRVVAVAGDHVAVRRGVLYVNE------------------------SPADERQRSARASYSFGPTVVPKDHIIVLGDNRDASFDSHVWGPLPVRNVIGCARARYWPVNRAAWLKR 224
BLAST of mRNA_H-paniculata_contig265.7233.1 vs. uniprot
Match: UPI001985DC91 (Signal peptidase I n=1 Tax=Candidatus Sericytochromatia bacterium TaxID=2762020 RepID=UPI001985DC91) HSP 1 Score: 115 bits (287), Expect = 1.230e-26 Identity = 73/206 (35.44%), Postives = 98/206 (47.57%), Query Frame = 1
Query: 1 IVSKSMHPTLAVGDRVLVDKASITFGKLLTHQNNKDLRRNDIVVFKPPEHSRYLFAQLLGENPSRISLRERMLPWKRRRSGQNTRSPLNLAVDFTKRVVAVAGDEVAVHRGLLYVN-KILAQPFPRIDTFSRSSSSHGKMSKVSANRHHKGSKASYSWGPTVVPTGHVFVLGDCRDESFDSHMWGPLPVQNVIGRARVRCWPIHRL 615
I S+SM PTL +GDR++V+K S FG RR +I+VF PP+H P +S R + W V + KRVV + G+ +AVH G +++N K L +P+ SY P VP GH+F++GD R+ S DSH+WGPLP+ NVIG A VR WPI RL
Sbjct: 46 IPSESMVPTLVIGDRLIVEKISPHFGAP---------RRGEILVFYPPQHE-----------PVEMSTGVRFVRWL----------GFTPEVAYIKRVVGLPGETIAVHDGQVWINDKALVEPYTN-------------------------EAPSYEMPPQTVPPGHLFMMGDNRNNSQDSHVWGPLPIDNVIGHAAVRFWPITRL 196
BLAST of mRNA_H-paniculata_contig265.7233.1 vs. uniprot
Match: A0A351LED6_9CYAN (Signal peptidase I (Fragment) n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A351LED6_9CYAN) HSP 1 Score: 109 bits (273), Expect = 1.440e-24 Identity = 74/213 (34.74%), Postives = 100/213 (46.95%), Query Frame = 1
Query: 1 IVSKSMHPTLAVGDRVLVDKASITFGKLLTHQNNKDLRRNDIVVFKPPEHSRYLFAQLLGENPSRISLRERMLPWKRRRSGQNTRSPLNLAVDFTKRVVAVAGDEVAVHRGLLYVN-KILAQPFPRIDTFSRSSSSHGKMSKVSANRHHKGSKASYSWGPTVVPTGHVFVLGDCRDESFDSHMWGPLPVQNVIGRARVRCWPIHRLAWFRRDP 636
I S SM PTL + DR++VDK S F KD +R DIVVF PP+ + F+ NP+ + W T++ L F KRVV + GD+V V +++N + LA+ + ID SY +GP VP VLGD R+ S DSH WGP+P N+IG+A VR WP++RL P
Sbjct: 29 IPSGSMLPTLQINDRLIVDKISYRF---------KDPQRGDIVVFMPPQKAASCFSNFSDPNPNNNN-------WADSSPDSTTQNNPRLKDAFIKRVVGLPGDKVEVKGEQVFINGQKLAEKY--IDA-----------------------PPSYQFGPVKVPPKSYLVLGDNRNNSCDSHFWGPVPRDNIIGKAVVRFWPLNRLGGLTPQP 200
BLAST of mRNA_H-paniculata_contig265.7233.1 vs. uniprot
Match: C1EE28_MICCC (Peptidase_S26 domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EE28_MICCC) HSP 1 Score: 104 bits (260), Expect = 1.700e-22 Identity = 71/212 (33.49%), Postives = 98/212 (46.23%), Query Frame = 1
Query: 1 IVSKSMHPTLAVGDRVLVDKASITFGKLLTHQNNKDLRRNDIVVFKPPEHSRYLFAQLLGENPSRISLRERMLPWKRRRSGQNTRSPLNLAVDFTKRVVAVAGDEVAVHRGLLYVNKILAQPFPRIDTFSRSSSSHGKMSKVSANRHHKGSKASYSWGPTVVPTGHVFVLGDCRDESFDSHMWGPLPVQNVIGRARVRCWPIHRLAWFRRDP 636
I S SM+PT +GDR++ +K +T++ D D+++F PP+ + T + L V F KRVVAVAGD V V +G LYVN I S GK K+ A+Y+ P VVP G VFV+GD R+ SFDSH+WGPLP +N++GRA + WP + + P
Sbjct: 70 IPSLSMYPTFDIGDRLIAEK--------ITYRFKHDPFPGDVIIFHPPKTPK-------------------------------TSTALTKEV-FIKRVVAVAGDTVEVKKGELYVNGI----------------SRGKELKLEP--------ATYNMDPQVVPAGDVFVMGDNRNNSFDSHIWGPLPKENILGRACFKYWPPQKFGGLPKYP 217
BLAST of mRNA_H-paniculata_contig265.7233.1 vs. uniprot
Match: UPI001F2EB4FC (signal peptidase I n=1 Tax=Leptodesmis sichuanensis TaxID=2906798 RepID=UPI001F2EB4FC) HSP 1 Score: 103 bits (257), Expect = 2.750e-22 Identity = 71/216 (32.87%), Postives = 101/216 (46.76%), Query Frame = 1
Query: 1 IVSKSMHPTLAVGDRVLVDKASITFGKLLTHQNNKDLRRNDIVVFKPPEHSRYLFAQLLGENPSRISLRERMLPWKRRRSGQNTRSPLNLAVDFTKRVVAVAGDEVAVHRGLLYVNKILAQPFPRIDTFSRSSSSHGKMSKVSANRHHKGSKASYSWGPTVVPTGHVFVLGDCRDESFDSHMWGPLPVQNVIGRARVRCWPIHRLAWFRRDPPPSS 648
I SKSM PTL V DR++VDK S F KD +R DI+VF PP+ A ++ P + Q+ + + KR++ + GD V V +G +++N QP G +++V Y +GP VP G VLGD R+ S DSH WG +P +N+IGRA VR WP++RL +P S+
Sbjct: 50 IPSKSMVPTLQVDDRLIVDKVSYHF---------KDPQRGDIIVFMPPDE-----ASVVCTGPQ---------------ASQSNKDA------YIKRIIGLPGDTVEVKQGQVFINN---QPLKE-----------GYVAEV----------PDYQYGPRTVPQGSYLVLGDNRNNSCDSHYWGFVPRENIIGRAIVRFWPLNRLGEITSEPGSSN 206
BLAST of mRNA_H-paniculata_contig265.7233.1 vs. uniprot
Match: UPI0010A4B6B7 (chloroplast processing peptidase-like isoform X1 n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A4B6B7) HSP 1 Score: 102 bits (253), Expect = 8.930e-22 Identity = 71/199 (35.68%), Postives = 95/199 (47.74%), Query Frame = 1
Query: 1 IVSKSMHPTLAVGDRVLVDKASITFGKLLTHQNNKDLRRNDIVVFKPPEHSRYLFAQLLGENPSRISLRERMLPWKRRRSGQNTRSPLNLAVDFTKRVVAVAGDEVAVHRGLLYVNKILAQPFPRIDTFSRSSSSHGKMSKVSANRHHKGSKASYSWGPTVVPTGHVFVLGDCRDESFDSHMWGPLPVQNVIGRARVRC 597
I S SMHPTL VGDR++V+KAS + DIV+F+ P QLLG+ + I + KRVVA AGD V VH G LY+N + AQ K V+A + +Y+ T VP GHV+VLGD R+ S+DSH+WGPLP++N++GR + C
Sbjct: 64 IPSSSMHPTLTVGDRIIVEKASYYI---------RSPAIQDIVLFRDP-------TQLLGDKAADIVI---------------------------KRVVAKAGDFVEVHHGSLYINGV-AQ----------------KEDYVAA-------QPAYTTNLTYVPNGHVYVLGDNRNNSYDSHIWGPLPIKNIVGRYVMCC 195
BLAST of mRNA_H-paniculata_contig265.7233.1 vs. uniprot
Match: UPI000C1CE297 (thylakoidal processing peptidase 1, chloroplastic-like isoform X1 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CE297) HSP 1 Score: 105 bits (263), Expect = 9.520e-22 Identity = 71/206 (34.47%), Postives = 95/206 (46.12%), Query Frame = 1
Query: 1 IVSKSMHPTLAVGDRVLVDKASITFGKLLTHQNNKDLRRNDIVVFKPPEHSRYLFAQLLGENPSRISLRERMLPWKRRRSGQNTRSPLNLAVDFTKRVVAVAGDEVAVHRGLLYVNKILAQPFPRIDTFSRSSSSHGKMSKVSANRHHKGSKASYSWGPTVVPTGHVFVLGDCRDESFDSHMWGPLPVQNVIGRARVRCWPIHRLA 618
I S SM+PTL VGDR+L +K S F K+ +DIV+FK P Q +G + S I F KR+VA AGD VAVH G L VN I+ ++ + Y P +VP G+VFV+GD R+ SFDSH WGPLP++N++GR+ R WP R++
Sbjct: 228 IPSTSMYPTLNVGDRILAEKVSYIF---------KNPEVSDIVIFKVPP-----ILQDIGYSSSDI---------------------------FIKRIVAKAGDYVAVHGGKLLVNDIVQNEDFILEPLA------------------------YEMDPVLVPEGYVFVMGDNRNNSFDSHNWGPLPIKNIVGRSVFRYWPPSRVS 368
BLAST of mRNA_H-paniculata_contig265.7233.1 vs. uniprot
Match: A0A2R6RPG2_ACTCC (Thylakoidal processing peptidase n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6RPG2_ACTCC) HSP 1 Score: 100 bits (248), Expect = 9.840e-22 Identity = 66/195 (33.85%), Postives = 88/195 (45.13%), Query Frame = 1
Query: 16 MHPTLAVGDRVLVDKASITFGKLLTHQNNKDLRRNDIVVFKPPEHSRYLFAQLLGENPSRISLRERMLPWKRRRSGQNTRSPLNLAVDFTKRVVAVAGDEVAVHRGLLYVNKILAQPFPRIDTFSRSSSSHGKMSKVSANRHHKGSKASYSWGPTVVPTGHVFVLGDCRDESFDSHMWGPLPVQNVIGRARVRCW 600
M+PTL VGDRV++++AS + NDI++F+ P Q G I F KR+VA AGD V VH G LYVN I + N +A+YS PT+VP GHV+VLGD R++SFDSH WG LPV+N++GR + C+
Sbjct: 1 MYPTLRVGDRVIIERASYYIRRPAI---------NDIIIFRAP-------TQQPGFREEEI---------------------------FIKRIVASAGDLVEVHHGSLYVNGI------------------------AQNEDFIAERATYSSNPTIVPRGHVYVLGDNRNKSFDSHNWGTLPVKNIVGRYVMSCY 128
BLAST of mRNA_H-paniculata_contig265.7233.1 vs. uniprot
Match: A0A830D9E9_9LAMI (Thylakoidal processing peptidase 1 chloroplastic n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830D9E9_9LAMI) HSP 1 Score: 105 bits (262), Expect = 1.210e-21 Identity = 71/201 (35.32%), Postives = 89/201 (44.28%), Query Frame = 1
Query: 1 IVSKSMHPTLAVGDRVLVDKASITFGKLLTHQNNKDLRRNDIVVFKPPEHSRYLFAQLLGENPSRISLRERMLPWKRRRSGQNTRSPLNLAVDFTKRVVAVAGDEVAVHRGLLYVNKILAQPFPRIDTFSRSSSSHGKMSKVSANRHHKGSKASYSWGPTVVPTGHVFVLGDCRDESFDSHMWGPLPVQNVIGRARVRCWP 603
I SKSM+PTL VGDR+L +K S F + +DIV+FK P F Q G NPS + F KRVVA AGD V V G L VN + ++ Y P +VP G+VFVLGD R+ SFDSH WGPLP++N++GR+ R WP
Sbjct: 215 IPSKSMYPTLDVGDRILAEKVSYIF---------RSPEVSDIVIFKAPS-----FLQEFGFNPSDV---------------------------FIKRVVAKAGDYVEVCDGKLMVNSLAQDEDFILEPLE------------------------YEMEPMLVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWP 350
BLAST of mRNA_H-paniculata_contig265.7233.1 vs. uniprot
Match: UPI001689EE84 (signal peptidase I n=1 Tax=Leptolyngbya sp. FACHB-261 TaxID=2692806 RepID=UPI001689EE84) HSP 1 Score: 101 bits (252), Expect = 1.270e-21 Identity = 66/205 (32.20%), Postives = 94/205 (45.85%), Query Frame = 1
Query: 1 IVSKSMHPTLAVGDRVLVDKASITFGKLLTHQNNKDLRRNDIVVFKPPEHSRYLFAQLLGENPSRISLRERMLPWKRRRSGQNTRSPLNLAVDFTKRVVAVAGDEVAVHRGLLYVN-KILAQPFPRIDTFSRSSSSHGKMSKVSANRHHKGSKASYSWGPTVVPTGHVFVLGDCRDESFDSHMWGPLPVQNVIGRARVRCWPIHR 612
I S SM PTL + D+++V+K S F + + +IVVF PP+ L + + + F KRV+ GDE+A+H G +YVN K LA+P+ ++A +Y WGP +P+G+ FV+GD R+ S DSH+WG LP VIGRA VR WP+ R
Sbjct: 35 IPSASMEPTLQINDKLIVEKVSYRF---------RPPQPGEIVVFYPPDEPNKLPGEAVHQA-------------------------------FIKRVIGTPGDELAIHDGEVYVNQKPLAEPY------------------IAA-------PPTYEWGPEQIPSGNFFVMGDNRNNSNDSHVWGFLPADRVIGRAWVRFWPVKR 174 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig265.7233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig265.7233.1 >prot_H-paniculata_contig265.7233.1 ID=prot_H-paniculata_contig265.7233.1|Name=mRNA_H-paniculata_contig265.7233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=212bp MHPTLAVGDRVLVDKASITFGKLLTHQNNKDLRRNDIVVFKPPEHSRYLFback to top mRNA from alignment at H-paniculata_contig265:23526..27585- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig265.7233.1 ID=mRNA_H-paniculata_contig265.7233.1|Name=mRNA_H-paniculata_contig265.7233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4060bp|location=Sequence derived from alignment at H-paniculata_contig265:23526..27585- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig265:23526..27585- >mRNA_H-paniculata_contig265.7233.1 ID=mRNA_H-paniculata_contig265.7233.1|Name=mRNA_H-paniculata_contig265.7233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at H-paniculata_contig265:23526..27585- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |