mRNA_H-paniculata_contig2649.7229.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2649.7229.1 vs. uniprot
Match: D8LSJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ6_ECTSI) HSP 1 Score: 467 bits (1201), Expect = 2.130e-140 Identity = 667/1026 (65.01%), Postives = 737/1026 (71.83%), Query Frame = 3
Query: 180 GVPGPSVPAATLAVTRGDVAGGLDIFLRCMARRRLRLTRAKNSVNSGAVAAQGQGGVPACNKFLRALGDAGAIDDAISAYEAMVASGLRPTIVTFSTLISRAGACRRVRVAERFYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGIVLAGLDSRR-------RVAATNGPSSLSPYSSASSVVNSAAQT---------------------ATVVSQTVAAQEA-----------GRIG---------------------NTAAVVDEGDGEKTGAGDSG--------ASWKIDPKLENDLLKLFGQADQIDEAFKMLEDMIQRRDSPDSETWLVLLNAVTTAEALDKAVALIERSRVEGRGSEINELTYSALLGACGRAKKLARAFRVVEGMKETGVKPTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAISDDNTRRTRELQRSRQQEDWLLTPI------PAAANTAAIAAIETAAPHSSPRTYSATSGVVPVEERATVPGDTASAGAATVADAATFGLDE--PKVVVAAAASGDTVESPTFEADKQGGRIVPTAAATAASATGEITGRSSRPRISKFHDSIDLVALGASTIPPLSQSDPSFSPERPASMSSGSRVE---RGPLGEGSGSPHG-SKKKTENENPAVDNLFRVFLVFQEMRSRGVRPDLRAYNALVNACADVGELDRALEVVRQMVDEDEGGGLQPDAVTYTSLIKAAARATPPRVEEAEEIFAVMQQRTNHFSTFARPTEVTYAHLMRASVEAGNYDRALELWWQQQAAGVRPGSRSTRAALTACSG 3017
GVPGPSVP AT AV RGD+A G+++FL CM+RRRL+L A A A+ QGGVPACN FLRALGDAG IDD ++AYEAM+A LRPTIVTFSTLISRAGACRRVR+AERF+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IVL L+ RR NG ++ + + V+S ++ AT ++ TV+A A G +G TA + G G TG G SG +W+++ KLE+DLL+LFGQADQ+D AFK+LE M++RRDSPD ETWL+LLNAV TA ALDKAV L+ERSR EG GSEINELTYSALLGACGRAKKLARAFR+V+ M+ETGVKPTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AIS++NT RTR LQR+R E P PA ++ A AA AP A S +P +T PG T S GA+T+ G+D+ + V A A G T GG P AAAT A A E + ++A +S+ + P+ +S R E RGP + + S S ++N NPA+DNLFRVFLVFQEMRSRGVRPDLRAYNALVN CAD+GE DRAL VVR MVD+ EGGGLQPDAVTYTSLIKAAARA PPRVEEAEEIFA MQQRTNHFSTFARPTEVTYAHLMRASV A +Y RALE+W QQ +AGV PG RSTRAAL AC G
Sbjct: 44 GVPGPSVPGATAAVVRGDIANGVEMFLECMSRRRLKLAAAT------AAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLDELNKRRPNSXXXXXXXXRNGDTNAAEFVREVGHVDSDTRSSSGRGTGIGDVARKEAAGRGPATAMAGTVSADPADSENVTEAFFSGTVGITPGPAGIDTIAGPNPLPPPMATAEAITRG-GATTGEGGSGETATARGRGAWRMNRKLESDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKAISEENTLRTRALQRTRMLETRRSPPSSSAVRRPAEGSSVAAAASAPGAP--------AQSSPLP----STAPGTT-SGGASTLPR---DGVDDRGKSLDVRADAVGTTKVV-------AGGGKGPAAAATRAHAKEEPS----------------VIAAWSSSSSGRGTAGPATKAGGVGGYASSGRSEASLRGPTADPTESSRAPSSTSSDNANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWRQQLSAGVAPGPRSTRAALAACGG 1023
BLAST of mRNA_H-paniculata_contig2649.7229.1 vs. uniprot
Match: A0A836CEM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM1_9STRA) HSP 1 Score: 166 bits (420), Expect = 3.510e-38 Identity = 85/155 (54.84%), Postives = 111/155 (71.61%), Query Frame = 3
Query: 2547 NENPAVDNLFRVFLVFQEMRSRGVRPDLRAYNALVNACADVGELDRALEVVRQMVDEDEGGGLQPDAVTYTSLIKAAARATPPRVEEAEEIFAVMQQRTNHFSTFARPTEVTYAHLMRASVEAGNYDRALELWWQQQAAGVRPGSRSTRAALTAC 3011
+ +PA DNLFRVFLVF EM+S+GV+PD AYNAL+N+CA VG+L+RA+ V+RQM +++ L PDA+T+TSLIK AA A + AEEIFA MQQRTNHFSTF RP+E T+ H++ A++ + R ELW Q A G+ P SR+ L AC
Sbjct: 652 HSDPAADNLFRVFLVFGEMKSQGVQPDRPAYNALINSCAAVGDLERAMAVLRQMYEDEHC--LPPDAITFTSLIKTAAAAH--NADAAEEIFAAMQQRTNHFSTFHRPSERTFRHMITANMNIKRFSRVQELWAQMLAEGLAPSSRTCSLVLGAC 802
BLAST of mRNA_H-paniculata_contig2649.7229.1 vs. uniprot
Match: A0A7S0XEC2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEC2_9STRA) HSP 1 Score: 111 bits (278), Expect = 2.330e-22 Identity = 58/126 (46.03%), Postives = 85/126 (67.46%), Query Frame = 3
Query: 2529 SKKKTENENPAVDNLFRVFLVFQEMR-SRGVRPDLRAYNALVNACADVGELDRALEVVRQMVDEDEGGGLQPDAVTYTSLIKAAA-RATPPRVEEAEEIFAVMQQRTNHFSTFARPTEVTYAHLMR 2900
+ ++T+ E D+LFR++LVFQEM+ + ++ D YN L+NACA VG++DRALE + M + G++P+ +TYTSLIKA A + +E AE IF MQQR+NHFS + +P E+TY LM+
Sbjct: 161 NSRQTKVEQMKRDDLFRLYLVFQEMKYNPAIQLDTAVYNTLINACAGVGDIDRALETMTAMQEN----GIEPNVITYTSLIKACAFNSRNEMIELAENIFNEMQQRSNHFSNYIQPNEMTYEKLMQ 282
BLAST of mRNA_H-paniculata_contig2649.7229.1 vs. uniprot
Match: A0A0G4F8K7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8K7_VITBC) HSP 1 Score: 103 bits (257), Expect = 1.310e-18 Identity = 164/515 (31.84%), Postives = 224/515 (43.50%), Query Frame = 3
Query: 1485 IDPKLENDLLKLFGQADQIDEAFKMLEDMIQRRDSPDSETWLVLLNAVTTAEALDKAVALIERSRVEGRGSEINELTYSALLGACGRAKKLARAFRVVEGMKETGVKPTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAISDDNTRRT-RELQRSRQQEDWLLTPIPAAANTAAIAAIETAAPHSSPRTYSATSGVVPVEERATVPGDTASAGAATVADAATFGLDEPKVVVAAAASGDTVESPTFEADKQGGRIVPT-------AAATAASATGEITGRSSRPRISKFHDSIDLVALGASTIPPLSQSDPSFSPERPASMSSGSRVERGPLGEGSGSPHGSKKKTENENPAVDNLFRVFLVFQEMRSRGVRPDLRAYNALVNACADVGELDRALEVVRQMVDEDEGGGLQPDAVTYTSLIKAAARATPPRVEEAEEIFAVMQQRTNHFSTFARPTEVTYAHLMRASVEAGNYDRALELW-WQQQAAGVRPGSRSTRAAL 3002
I L L+++F QA ++ AF M E MIQ+R +PD T L +A+ R + I+ +TYSA+LGAC RA+ + +AF + + M GV P E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +SD+ RR R+L R RQ D TPI + T + ++ P SP + + + V+ R G + P D++ R P+ A A ASA + SRPR+ +D +A E ++ +NLFR+FLVFQEM+S GV+PDL AYN L++AC GE+++A+EV A MQQRTNHF++ P+E+T+ LM A+ A R EL+ Q+ G+RP R+ A+
Sbjct: 365 IQSNLTRPLMQMFSQARLLNRAFDMFERMIQQRQAPDQATLQTLFDAIXXXXXXXXXXXXXXXMR---ESTHISRVTYSAVLGACRRARTIVKAFLLFKDMMAAGVTPGESEYLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTVSDEFRRRAARKLNRHRQIAD---TPITEPSQTPDTS-LDRLPPSPSPAQFPWNAAMSSVDLR----------------------------------QGKKLSPPRDVLDRRKKRAEPSPPERRVEAEALPASAPPSVALGLSRPRLRH----LDSMAYSL----------------------------------------------EEQHYYRENLFRIFLVFQEMQSSGVQPDLCAYNTLLDACGRAGEVEKAMEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTA------MQQRTNHFASCVLPSELTFKQLMLANRNAYRLRRVFELFDMMQRQHGIRPTLRTGAIAI 782
BLAST of mRNA_H-paniculata_contig2649.7229.1 vs. uniprot
Match: A0A0M0JUW1_9EUKA (Methionine--tRNA ligase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JUW1_9EUKA) HSP 1 Score: 88.2 bits (217), Expect = 9.420e-14 Identity = 56/150 (37.33%), Postives = 70/150 (46.67%), Query Frame = 3
Query: 2559 AVDNLFRVFLVFQEMRSRGVRPDLRAYNALVNACADVGELDRALEVVRQMVDEDEGGGLQPDAVTYTSLIKAAARATPPRVEEAEEIFAVMQQRTNHFSTFARPTEVTYAHLMRASVEAGNYDRALELWWQQQAAGVRPGSRSTRAALTA 3008
A D L VF VF EMR+ GV PDL A+NAL+NACA VG++ RA V + MQQRTNHFSTF P+ TY HLM +EA + L+L+ + +A G+ PG A L A
Sbjct: 1004 ASDTLQAVFTVFTEMRAAGVAPDLAAFNALINACASVGDVSRAEGAFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV------YHEMQQRTNHFSTFTPPSAHTYRHLMAVHLEAAHAHTVLDLFDEMKARGIAPGHAHYAAVLGA 1147
BLAST of mRNA_H-paniculata_contig2649.7229.1 vs. uniprot
Match: A0A7S2D4Z0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D4Z0_9EUKA) HSP 1 Score: 67.8 bits (164), Expect = 5.900e-10 Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 3
Query: 357 CNKFLRALGDAGAIDDAISAYEAMVASGLRPTIVTFSTLISRAGACRRVRVAERFY 524
CNK LR LGD G ++ + +EAMVASG+RPT VT+ TLISRAGA R+ ++A R Y
Sbjct: 2 CNKLLRVLGDGGHLEAMVGVFEAMVASGVRPTQVTYGTLISRAGAHRQPKLASRMY 57
BLAST of mRNA_H-paniculata_contig2649.7229.1 vs. uniprot
Match: A0A7S2E620_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E620_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 5.850e-9 Identity = 35/92 (38.04%), Postives = 56/92 (60.87%), Query Frame = 3
Query: 2547 NENPAVDNLFRVFLVFQEMRSRGVRPDLRAYNALVNACADVGELDRALEVVRQMVDEDEGGGLQPDAVTYTSLIKAAARATPPRVEEAEEIF 2822
N N A L +VFLVFQEMR G +PD YN L+ ACA G+ RA +V+ +++D D+ L+P V++ +++AA+R+ E+++
Sbjct: 749 NINDAKTLLVKVFLVFQEMRDAGAKPDTACYNVLLGACARAGDFTRARDVLNKLMDSDD---LEPTHVSWREMLRAASRSKTASSHLVEQVW 837
BLAST of mRNA_H-paniculata_contig2649.7229.1 vs. uniprot
Match: A0A1E7FP56_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FP56_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 7.920e-7 Identity = 31/99 (31.31%), Postives = 62/99 (62.63%), Query Frame = 3
Query: 2529 SKKKTENENPAVDNLFRVFLVFQEMRSRGVRPDLRAYNALVNACADVGELDRALEVVRQMVD-------------EDEGGGLQPDAVTYTSLIKAAARA 2786
S + E N A + L++V +VF+EM++ G D+R+YN L+ +CA G+++RA+E++++++D + + G LQP+ T+ ++++AA +A
Sbjct: 772 STRGQEISNNASNELYQVSMVFREMKASGCGVDIRSYNMLLRSCAKSGDINRAMEILKEIMDGKQQQQQHYRPQQQQDHGTLQPNDRTWRAVLRAAGKA 870 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2649.7229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2649.7229.1 >prot_H-paniculata_contig2649.7229.1 ID=prot_H-paniculata_contig2649.7229.1|Name=mRNA_H-paniculata_contig2649.7229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=985bp MARRRLRLTRAKNSVNSGAVAAQGQGGVPACNKFLRALGDAGAIDDAISAback to top mRNA from alignment at H-paniculata_contig2649:535..11265+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2649.7229.1 ID=mRNA_H-paniculata_contig2649.7229.1|Name=mRNA_H-paniculata_contig2649.7229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10731bp|location=Sequence derived from alignment at H-paniculata_contig2649:535..11265+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2649:535..11265+ >mRNA_H-paniculata_contig2649.7229.1 ID=mRNA_H-paniculata_contig2649.7229.1|Name=mRNA_H-paniculata_contig2649.7229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5910bp|location=Sequence derived from alignment at H-paniculata_contig2649:535..11265+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |