mRNA_H-paniculata_contig26474.7226.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26474.7226.1
Unique NamemRNA_H-paniculata_contig26474.7226.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26474.7226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26474contigH-paniculata_contig26474:907..2025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size605
Cds size603
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929792.3598225-CDS-H-paniculata_contig26474:906..10231622929792.3598225-CDS-H-paniculata_contig26474:906..1023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26474 907..1023 -
1691481012.8691978-CDS-H-paniculata_contig26474:906..10231691481012.8691978-CDS-H-paniculata_contig26474:906..1023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26474 907..1023 -
1622929792.376259-CDS-H-paniculata_contig26474:1539..20251622929792.376259-CDS-H-paniculata_contig26474:1539..2025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26474 1540..2025 -
1691481012.8866043-CDS-H-paniculata_contig26474:1539..20251691481012.8866043-CDS-H-paniculata_contig26474:1539..2025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26474 1540..2025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26474.7226.1prot_H-paniculata_contig26474.7226.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26474 907..2025 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26474.7226.1

>prot_H-paniculata_contig26474.7226.1 ID=prot_H-paniculata_contig26474.7226.1|Name=mRNA_H-paniculata_contig26474.7226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=201bp
MVDGDTVEVEIVDVDDNEEAGAVPATAPTVVKEVAVSSGDMVATQEATGV
EEGTPCNETISSPSHSVTPSTDDTDVPNAASASAPYSHFLVPLFLFALGY
DDLVPVGTPWPAGWKVTVALVRYELWFSGFFANKNHPPVHILHSYIDEHV
QDVLMASLTLTGVKEVIIDFGDALERARQVEPDKVPPTLEEVGRCRGVKW
Y
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mRNA from alignment at H-paniculata_contig26474:907..2025-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26474.7226.1 ID=mRNA_H-paniculata_contig26474.7226.1|Name=mRNA_H-paniculata_contig26474.7226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1119bp|location=Sequence derived from alignment at H-paniculata_contig26474:907..2025- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGACGGGGATACGGTCGAAGTGGAAATCGTCGATGTCGATGACAA
CGAGGAGGCGGGAGCCGTTCCCGCGACTGCACCTACTGTCGTGAAGGAGG
TAGCCGTTTCCTCGGGAGATATGGTGGCGACCCAGGAAGCTACCGGAGTA
GAGGAAGGGACCCCGTGCAACGAGACCATATCATCTCCCAGTCACTCAGT
GACGCCCTCGACAGACGATACAGACGTACCCAACGCGGCATCGGCTTCGG
CGCCGTACTCGCACTTTTTGGTACCGCTATTTTTGTTTGCCCTTGGATAC
GACGATCTGGTCCCTGTGGGAACCCCGTGGCCTGCCGGCTGGAAGGTGAC
GGTCGCTTTGGTCCGCTACGAACTCTGGTTTTCTGGATTCTTCGCAAATA
AAAACCATCCTCCCGTCCATATCCTCCATAGCTACATTGACGAACATGTA
CAGGACGTTTTGATGGCGTCGTTGACGTTAACGGGGGTGAGTGTTTGTTT
CGGGACACTAATGCTAGTGTCGACAGGTTGGAACAATTTTGGATGCACTA
CCCCGTCTCGTTGTTGTTTCGTATGGGTGCATGTGAAGATCGGGTCCTCA
TGGATGTCGCAGCTTGAAGCTTGCATAGCGGGGTATGTGGTCCTCGCGGC
TTGCAGATGTATATAGCCAGGGAGATGGAGGGAGATACCAGATTGCCAAA
GCCTACGACATTGGTTACTCTTTTCCAATCCAGGATGGGTATCTTTCATT
GAACTACATTGACTCGAGCGTTCGAATGCCTTTTGGTGTAAATTGCTATC
GCATGCAGATAATGTTAGTCGCTGTCGTTGTGGAGAAGTGCTCGTGGCAT
GAAAGCCGTTGTAACTTTCGTTGCACGCGACACCACTCCCATTGACCATC
GATGAAGATCTAGTATATTCTGCCCGCCGGTTCGACGCGAAGCAGTTCTT
ATTTTATAACGTTTTTCTCACGTCCCCCAATGGACTCCTCCGCTCGTGGC
AGGTGAAAGAGGTAATTATAGACTTCGGCGATGCTCTCGAACGAGCGCGT
CAAGTCGAACCGGACAAAGTACCTCCGACTCTCGAAGAAGTCGGTCGCTG
CCGTGGAGTGAAGTGGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig26474:907..2025-

>mRNA_H-paniculata_contig26474.7226.1 ID=mRNA_H-paniculata_contig26474.7226.1|Name=mRNA_H-paniculata_contig26474.7226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at H-paniculata_contig26474:907..2025- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGACGGGGATACGGTCGAAGTGGAAATCGTCGATGTCGATGACAA
CGAGGAGGCGGGAGCCGTTCCCGCGACTGCACCTACTGTCGTGAAGGAGG
TAGCCGTTTCCTCGGGAGATATGGTGGCGACCCAGGAAGCTACCGGAGTA
GAGGAAGGGACCCCGTGCAACGAGACCATATCATCTCCCAGTCACTCAGT
GACGCCCTCGACAGACGATACAGACGTACCCAACGCGGCATCGGCTTCGG
CGCCGTACTCGCACTTTTTGGTACCGCTATTTTTGTTTGCCCTTGGATAC
GACGATCTGGTCCCTGTGGGAACCCCGTGGCCTGCCGGCTGGAAGGTGAC
GGTCGCTTTGGTCCGCTACGAACTCTGGTTTTCTGGATTCTTCGCAAATA
AAAACCATCCTCCCGTCCATATCCTCCATAGCTACATTGACGAACATGTA
CAGGACGTTTTGATGGCGTCGTTGACGTTAACGGGGATGGTCGACGGGGA
TACGGTCGAAGTGGAAATCGTCGATGTCGATGACAACGAGGAGGCGGGAG
CCGTTCCCGCGACTGCACCTACTGTCGTGAAGGAGGTAGCCGTTTCCTCG
GGAGATATGGTGGCGACCCAGGAAGCTACCGGAGTAGAGGAAGGGACCCC
GTGCAACGAGACCATATCATCTCCCAGTCACTCAGTGACGCCCTCGACAG
ACGATACAGACGTACCCAACGCGGCATCGGCTTCGGCGCCGTACTCGCAC
TTTTTGGTACCGCTATTTTTGTTTGCCCTTGGATACGACGATCTGGTCCC
TGTGGGAACCCCGTGGCCTGCCGGCTGGAAGGTGACGGTCGCTTTGGTCC
GCTACGAACTCTGGTTTTCTGGATTCTTCGCAAATAAAAACCATCCTCCC
GTCCATATCCTCCATAGCTACATTGACGAACATGTACAGGACGTTTTGAT
GGCGTCGTTGACGTTAACGGGGGTGAAAGAGGTAATTATAGACTTCGGCG
ATGCTCTCGAACGAGCGCGTCAAGTCGAACCGGACAAAGTACCTCCGACT
CTCGAAGAAGTCGGTCGCTGCCGTGGAGTGAAGTGGTACGTGAAAGAGGT
AATTATAGACTTCGGCGATGCTCTCGAACGAGCGCGTCAAGTCGAACCGG
ACAAAGTACCTCCGACTCTCGAAGAAGTCGGTCGCTGCCGTGGAGTGAAG
TGGTAC
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