mRNA_H-paniculata_contig26469.7223.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: A0A4D8ZGL2_SALSN (Cis-zeatin O-glucosyltransferase n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZGL2_SALSN) HSP 1 Score: 60.1 bits (144), Expect = 4.400e-8 Identity = 35/119 (29.41%), Postives = 65/119 (54.62%), Query Frame = 1
Query: 4 EIWICDNGAMKHMIHDSDFLFDYEQCNG-HVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFADFGHEYRCSREGLRINLQTGRVLSAERFGSLDVMRGS 357
++WI D+GA H+ ++ YEQ +G +V +A+ + + G+G + ++ + V L V VP ++ +L+SL F G ++ +RI + VL+A ++G+L V+RGS
Sbjct: 120 DVWILDSGASYHLFPHMEYFTTYEQIDGGNVTMANSDVCKVVGIGSIRIRTH---DGVFCTLNDVRHVPQMTKNLISLNTFDSKGFSFKGESGVMRILKGSKMVLTALKWGTLYVLRGS 235
BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: UPI00142D866C (uncharacterized protein LOC117131983 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D866C) HSP 1 Score: 57.8 bits (138), Expect = 2.750e-7 Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 13 ICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFADFGHEY 264
I D+GA HMI D++ + D E +GHV +A+G+R+PI G G+L L F DS+ F+P + +LLS+ K +D G EY
Sbjct: 408 IIDSGASHHMIRDNNRIKDIEPAHGHVMIANGDRIPIRGFGKLKL-FDKDSKAF--------FMPEFTSNLLSVKK-SDNGGEY 481
BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: UPI0006AB1BB2 (uncharacterized protein LOC106350608 n=2 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB1BB2) HSP 1 Score: 57.8 bits (138), Expect = 2.950e-7 Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 13 ICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFADFGHEY 264
+ D+GA HMI DS + D E NGHV +A+G+++PI G+G+L L F DS+ M P + +LLS+ K+ G EY
Sbjct: 394 VVDSGASHHMISDSSLIRDIEPTNGHVMIANGDKIPIRGIGKLKL-FDEDSKAFYM--------PDFTSNLLSVKKYN--GGEY 466
BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: A0A078K3E9_BRANA (BnaUnng05000D protein (Fragment) n=1 Tax=Brassica napus TaxID=3708 RepID=A0A078K3E9_BRANA) HSP 1 Score: 56.6 bits (135), Expect = 6.890e-7 Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 13 ICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGK 240
I D+GA HMI D++ + D E +GHV +A+G+R+PI G+G+L L F DS+ M P + +LLS+ K
Sbjct: 406 IIDSGASHHMISDNNLIKDIEPAHGHVMIANGDRIPIRGIGKLNL-FNKDSKAFYM--------PEFTSNLLSVKK 472
BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: UPI000BBEF31C (uncharacterized protein LOC111199942 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEF31C) HSP 1 Score: 56.2 bits (134), Expect = 9.930e-7 Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 13 ICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFADFGHEY 264
I D+GA HMI D + + E +GHV +A+G+R+PI GVG L L F DS+ + M P + +LLS+ K +D G EY
Sbjct: 400 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFASNLLSV-KRSDNGGEY 473
BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B) HSP 1 Score: 56.2 bits (134), Expect = 1.020e-6 Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 13 ICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFADFGHEY 264
I D+GA HMI D + + E +GHV +A+G+R+PI GVG L L F DS+ + M P + +LLS+ K +D G EY
Sbjct: 415 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFTSNLLSV-KRSDNGGEY 488
BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90) HSP 1 Score: 56.2 bits (134), Expect = 1.020e-6 Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 13 ICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFADFGHEY 264
I D+GA HMI D + + E +GHV +A+G+R+PI GVG L L F DS+ + M P + +LLS+ K +D G EY
Sbjct: 414 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKALYM--------PEFTSNLLSV-KRSDNGGEY 487
BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM) HSP 1 Score: 55.8 bits (133), Expect = 1.310e-6 Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 1
Query: 13 ICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFA-DFGHEYRCSREGLRI-NLQTGRVL 315
I D+GA HMI D + D ++ G V +A+G+R+PIEGVG+L L F DS+ M P + +LLS+ K D G + + + +L+TGRV+
Sbjct: 308 IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL-FDKDSDAFYM--------PQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 401
BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: A0A4D9AUL3_SALSN (Uncharacterized protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9AUL3_SALSN) HSP 1 Score: 55.8 bits (133), Expect = 1.330e-6 Identity = 35/119 (29.41%), Postives = 64/119 (53.78%), Query Frame = 1
Query: 4 EIWICDNGAMKHMIHDSDFLFDYEQCN-GHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLSLGKFADFGHEYRCSREGLRINLQTGRVLSAERFGSLDVMRGS 357
++WI D+GA H+ ++ YEQ + G+V +A+ + G+G + ++ + V L V VP ++ +L+SL F G ++ +RI + VL+A ++G+L V+RGS
Sbjct: 125 DVWILDSGASYHLCPHREYFTTYEQIDRGNVTMANSVVCKVVGIGSIRIRTH---DGVFCTLNDVRHVPQMTKNLISLSTFDSRGFIFKGEGGVMRILKGSKVVLTALKWGTLYVLRGS 240
BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Match: UPI0006A74443 (uncharacterized protein LOC106321044 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A74443) HSP 1 Score: 55.8 bits (133), Expect = 1.360e-6 Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 13 ICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQFRYDSEVVLMNLTQVAFVPLLSHHLLS 231
I D+GA HMI DS + D E NGHV +A+G+++PI G+G+L L +D E ++ ++P + +LLS
Sbjct: 394 IVDSGASHHMISDSSLIRDIEPTNGHVMIANGDKIPIRGIGKLKL---FDKE------SKAFYMPDFTSNLLS 457 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26469.7223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26469.7223.1 >prot_H-paniculata_contig26469.7223.1 ID=prot_H-paniculata_contig26469.7223.1|Name=mRNA_H-paniculata_contig26469.7223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp MEIWICDNGAMKHMIHDSDFLFDYEQCNGHVRLADGNRLPIEGVGRLFLQback to top mRNA from alignment at H-paniculata_contig26469:937..1296+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26469.7223.1 ID=mRNA_H-paniculata_contig26469.7223.1|Name=mRNA_H-paniculata_contig26469.7223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig26469:937..1296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26469:937..1296+ >mRNA_H-paniculata_contig26469.7223.1 ID=mRNA_H-paniculata_contig26469.7223.1|Name=mRNA_H-paniculata_contig26469.7223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig26469:937..1296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |