mRNA_H-paniculata_contig26462.7222.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26462.7222.1
Unique NamemRNA_H-paniculata_contig26462.7222.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26462.7222.1 vs. uniprot
Match: A0A6H5JQV0_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV0_9PHAE)

HSP 1 Score: 333 bits (854), Expect = 2.940e-109
Identity = 156/233 (66.95%), Postives = 190/233 (81.55%), Query Frame = 1
Query:    1 IPAFWSWMNPSRRPEWDMAVNVDMMMNMEIMLWAAENGGNDAYVTAVEGHADATWKDIVRDDNSTFHVAAYDPATGDLVDQGTYQGWQDSSTWSRGQAWAIYGYVMVYRFLKKERFLSYSIGLLEYFEANVASDNVPFSDFDAPEDEFNPKDSSSTAIVGSALFELFETTGDPVYLETAQSYLSSVL-SADYYQPSATDGWESILRKASSEWDSDEVGAVFGDYFLLEAMVRF 696
            IPAFWSW NP+  P+W+ AVNVDM+MNMEIMLWAA NGG+  Y  AVE HAD TW D+VRDD ST+HVA YDP+TG+LVD+GTYQGWQD STWSRGQAWAIYG+ MVYR+LK++RFL Y+I  L YF  N+  DNVP++DFDAP D  NPKDSS+TAIV SALFELFE TG+P YLE AQ +L+S+L S+ Y+  SATDGW++ILR +++ W  + VG+V  DYFLLE+MVR+
Sbjct:   80 IPAFWSWANPTNEPQWERAVNVDMIMNMEIMLWAAVNGGDAEYSDAVENHADTTWADLVRDDYSTYHVADYDPSTGELVDKGTYQGWQDDSTWSRGQAWAIYGFTMVYRYLKEQRFLDYAINTLSYFVDNLPDDNVPYADFDAPVDSDNPKDSSATAIVTSALFELFELTGEPTYLEKAQEFLTSLLLSSTYFDSSATDGWQAILRNSAAAWGDEAVGSVTADYFLLESMVRY 312          
BLAST of mRNA_H-paniculata_contig26462.7222.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 4.790e-108
Identity = 157/233 (67.38%), Postives = 190/233 (81.55%), Query Frame = 1
Query:    1 IPAFWSWMNPSRRPEWDMAVNVDMMMNMEIMLWAAENGGNDAYVTAVEGHADATWKDIVRDDNSTFHVAAYDPATGDLVDQGTYQGWQDSSTWSRGQAWAIYGYVMVYRFLKKERFLSYSIGLLEYFEANVASDNVPFSDFDAPEDEFNPKDSSSTAIVGSALFELFETTGDPVYLETAQSYLSSVL-SADYYQPSATDGWESILRKASSEWDSDEVGAVFGDYFLLEAMVRF 696
            IPAFWSW  PS+ P+W+ AVNVDM+MNMEIMLWAA NGG+  Y  AVE HAD TW D+VR+D ST+HVA YDP+TGDL D+GTYQGWQD STWSRGQAWA+YG+ MV+R+LK ERFL  SI  L YF  N+  DNVP++DFDAPE+  NPKDSS+TAIV SALFELFE TG+P YLE AQ +LSS+L S+ Y+  SATDGW+++LR++++ W  D VG+V GDYFLLEAMVR+
Sbjct:   80 IPAFWSWKKPSKEPQWERAVNVDMIMNMEIMLWAANNGGDTDYSDAVENHADTTWADLVREDYSTYHVADYDPSTGDLEDKGTYQGWQDDSTWSRGQAWAVYGFAMVHRYLKDERFLDRSILTLGYFVDNLPDDNVPYADFDAPENSDNPKDSSATAIVASALFELFELTGEPTYLEKAQEFLSSLLLSSTYFDSSATDGWQALLRESAAAWGEDSVGSVTGDYFLLEAMVRY 312          
BLAST of mRNA_H-paniculata_contig26462.7222.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 3.740e-103
Identity = 152/233 (65.24%), Postives = 183/233 (78.54%), Query Frame = 1
Query:    1 IPAFWSWMNPSRRPEWDMAVNVDMMMNMEIMLWAAENGGNDAYVTAVEGHADATWKDIVRDDNSTFHVAAYDPATGDLVDQGTYQGWQDSSTWSRGQAWAIYGYVMVYRFLKKERFLSYSIGLLEYFEANVASDNVPFSDFDAPEDEFNPKDSSSTAIVGSALFELFETTGDPVYLETAQSYLSSVL-SADYYQPSATDGWESILRKASSEWDSDEVGAVFGDYFLLEAMVRF 696
            IPAFWSW NP   P+W+ AVNVDM+MNMEIMLWAA N G+  Y  A E HAD TW D+VRDD STFHVA Y+ +TG+LVD+GTYQGWQD STWSRGQAWAIYG++MV+R+L+K RFL Y I  L YF  N+  DNVP++DFDAP D  NPKDSS+TAIV SALFELFE TG+P YLE  Q +LSS+L S +Y+  SATDGW++ILR +++ W    VG+V  DYFLLE+MVR+
Sbjct:  138 IPAFWSWANPKSEPQWERAVNVDMIMNMEIMLWAAVNDGDAEYSDAAENHADTTWADLVRDDYSTFHVADYNKSTGELVDKGTYQGWQDDSTWSRGQAWAIYGFIMVHRYLQKPRFLDYGINTLSYFVDNLPDDNVPYADFDAPVDSDNPKDSSATAIVTSALFELFEQTGEPSYLEKGQEFLSSLLLSPNYFDSSATDGWQAILRNSAAAWGDAAVGSVTADYFLLESMVRY 370          
BLAST of mRNA_H-paniculata_contig26462.7222.1 vs. uniprot
Match: A0A6H5KCI0_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI0_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 1.190e-95
Identity = 154/235 (65.53%), Postives = 184/235 (78.30%), Query Frame = 1
Query:    1 IPAFWSWMNPSRRPEWDMAVNVDMMMNMEIMLWAAENGGNDAYVTAVEGHADATWKDIVRDDNSTFHVAAYDPATGDLVDQGTYQGWQDSSTWSRGQAWAIYGYVMVYRFLKKERFLSYSIGLLEYFEANVASDNVPFSDFDAPEDEF-NPKDSSSTAIVGSALFELFETTGDPVYLETAQSYLSSVLSADYYQPSATDGWESILRKASSEW-DSD-EVGAVFGDYFLLEAMVRF 696
            IPA+WSW NPSRRP+WD AVNVDMMMN+EI+LWA  NGG D +   V GHAD+TWKDIVR+DNST HVAAYD  TG+L++ GTYQG+ +SSTW+RGQAWAIYGY MVYRFL ++RFL  SIGLLEY+E N+  D +P +DFDAPE    N KDSS+ AIV S L ELF  T DP YL  +Q+YLS++ +   YQP ATDG++SILR+A  EW D D E+GAVFGDYF LE MVR+
Sbjct:  205 IPAYWSWENPSRRPDWDRAVNVDMMMNLEILLWAGLNGGED-HELEVAGHADSTWKDIVREDNSTNHVAAYDIDTGELIETGTYQGYTNSSTWTRGQAWAIYGYAMVYRFLPEQRFLDRSIGLLEYYEDNLPEDLIPPADFDAPESATDNGKDSSAAAIVSSGLLELFLETEDPTYLVKSQTYLSALFAGTCYQPDATDGYQSILRRAMREWGDEDGEIGAVFGDYFFLETMVRY 438          
BLAST of mRNA_H-paniculata_contig26462.7222.1 vs. uniprot
Match: D8LHN8_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN8_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 1.390e-71
Identity = 114/172 (66.28%), Postives = 137/172 (79.65%), Query Frame = 1
Query:    1 IPAFWSWMNPSRRPEWDMAVNVDMMMNMEIMLWAAENGGNDAYVTAVEGHADATWKDIVRDDNSTFHVAAYDPATGDLVDQGTYQGWQDSSTWSRGQAWAIYGYVMVYRFLKKERFLSYSIGLLEYFEANVASDNVPFSDFDAPEDEF-NPKDSSSTAIVGSALFELFETTG 513
            IPA+WSW NP++RP+WD AVNVDMMMN+EI+LWA  NGG D +   VEGHAD+TWKDIVR+DNST HVAAYD  TG+ ++ GTYQG+ +SSTW+RGQAWAIYGY MVYRFL ++RFL  SIGLL+Y+E N+  D +P +DFDAPE    N KDSS+ AIV S L ELF  TG
Sbjct:  168 IPAYWSWENPTKRPDWDRAVNVDMMMNLEILLWAGLNGGED-HELEVEGHADSTWKDIVREDNSTNHVAAYDIDTGEFIETGTYQGYTNSSTWTRGQAWAIYGYAMVYRFLPEQRFLDRSIGLLKYYEDNLPEDLIPPADFDAPESATDNGKDSSAAAIVSSGLLELFLETG 338          
BLAST of mRNA_H-paniculata_contig26462.7222.1 vs. uniprot
Match: A0A6H5JQR3_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQR3_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 2.720e-67
Identity = 115/218 (52.75%), Postives = 141/218 (64.68%), Query Frame = 1
Query:    1 IPAFWSWMNPSRRPEWDMAVNVDMMMNMEIMLWAAENGGNDAYVTAVEGHADATWKDIVRDDNSTFHVAAYDPATGDLVDQGTYQGWQDSSTWSRGQAWAIYGYVMVYRFLKKERFLSYSIGLLEYFEANVASDNVPFSDFDAPEDEFNPKDSSSTAIVGSALFELFETTGDPVYLETAQSYLSSVL-SADYYQPSATDGWESILRKASSEWDSDEVG 651
            IPAFWSW NP   P+W+  VNVD+++N EI+LWAA NGG   Y                         AA   A  DL   G YQGWQD STWSRGQAWA+YG+ MV+R+LKK+RFL Y+I  L YF  ++  DNVP++DFDAP D  NPKDSS TAIV SAL ELFE  G+P YLE AQ +LSS+L S+ Y+   ATDGW++ILR ++  W  + VG
Sbjct:   63 IPAFWSWANPKNEPQWERVVNVDVIINTEIVLWAAVNGGKANY------------------------SAAAARARADLG--GAYQGWQDDSTWSRGQAWAMYGFTMVHRYLKKQRFLEYAINTLSYFIDSLPDDNVPYADFDAPVDSDNPKDSSVTAIVTSALLELFELIGEPSYLEKAQEFLSSLLLSSTYFDSLATDGWQAILRNSAPAWGDEAVG 254          
BLAST of mRNA_H-paniculata_contig26462.7222.1 vs. uniprot
Match: A0A6N6ZAI7_9BACT (Putative unsaturated glucuronyl hydrolase n=1 Tax=Puniceicoccaceae bacterium 5H TaxID=2508868 RepID=A0A6N6ZAI7_9BACT)

HSP 1 Score: 217 bits (552), Expect = 7.070e-65
Identity = 117/237 (49.37%), Postives = 156/237 (65.82%), Query Frame = 1
Query:    1 IPAFWSWMNPSRRPEWD-MAVNVDMMMNMEIMLWAAENGGNDAYVTAVEGHADATWKDIVRDDNSTFHVAAYDPATGDLVDQGTYQGWQDSSTWSRGQAWAIYGYVMVYRFLKKERFLSYSIGLLEYF----EANVASDNVPFSDFDAPEDEFNPKDSSSTAIVGSALFELFETTGDPVYLETAQSYLSSVLSADYYQPSATDGWESILRKASSEWDSDEVGAVFGDYFLLEAMVRF 696
            I AF +W      P  +   VN+DMMMNMEI+LWA+++GGN A+  A   HADA+W+D+VRDD STFHV  Y+   G +  + T+QGW+  STWSRGQAWA+YGY M+YR+ +  R L  +    +YF    EA V  D VP+SDFDAP D  NP+D+S+ AIV SA  EL++TTG+  YL  A++ L+S+  A Y   S    +ES+L K S +W   EVGAV GDY+ +EAM R+
Sbjct:  158 IGAFRAWPASDSTPNTEPFEVNIDMMMNMEIILWASQHGGNTAWADAAISHADASWEDLVRDDYSTFHVVDYN-LDGSVDSKRTHQGWKTDSTWSRGQAWAVYGYTMLYRYTQLPRMLERAEHTFDYFMTATEAQV-DDYVPYSDFDAPIDSENPRDTSAAAIVASAALELYQTTGEQKYLTAAENMLNSLTQAPYL--SIGTDYESVLAKGSEKWGEPEVGAVTGDYYFIEAMWRY 390          
BLAST of mRNA_H-paniculata_contig26462.7222.1 vs. uniprot
Match: R9PSV9_AGAAL (Putative unsaturated glucuronyl hydrolase n=4 Tax=Agarivorans TaxID=261825 RepID=R9PSV9_AGAAL)

HSP 1 Score: 201 bits (510), Expect = 4.190e-59
Identity = 108/239 (45.19%), Postives = 149/239 (62.34%), Query Frame = 1
Query:    1 IPAFWSWM----NPSRRPEWDMAVNVDMMMNMEIMLWAAENGGNDAYVTAVEGHADATWKDIVRDDNSTFHVAAYDPATGDLVDQGTYQGWQDSSTWSRGQAWAIYGYVMVYRFLKKERFLSYSIGLLEYFEANV---ASDNVPFSDFDAPEDEFNPKDSSSTAIVGSALFELFETTGDPVYLETAQSYLSSVLSADYYQPSATDGWESILRKASSEWDSDEVGAVFGDYFLLEAMVRF 696
            I AF SW     NP+R P     VN+D +MNME++LW  ++     +      HAD TW+  VR++ ST+HV +Y P+ G++V + T+QGW+  STWSRGQAW++Y Y M YR+   ER L  SI   EYF  +      D VP+SDFDAP D+ NP+DSS+TAIV SAL EL++ T    YL  AQ  L+S+ +  Y   +  + ++SIL K S +W   EVG +FGDYF +EA+ R+
Sbjct:  166 IGAFRSWRQGISNPTRLP---FEVNIDQLMNMELVLWVGKHANKPEFTKMAISHADKTWEHGVRENGSTYHVVSYSPS-GEVVKKRTHQGWKTESTWSRGQAWSVYAYAMYYRYTGLERMLERSIKSYEYFIESTKQQTQDLVPYSDFDAPIDDDNPRDSSATAIVASALIELYKITQQEKYLNDAQQMLASLSTPKYL--AMDNNYQSILLKGSEKWGEPEVGTIFGDYFFIEALYRW 398          
BLAST of mRNA_H-paniculata_contig26462.7222.1 vs. uniprot
Match: D7FUK3_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUK3_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 8.760e-59
Identity = 93/153 (60.78%), Postives = 118/153 (77.12%), Query Frame = 1
Query:  241 QGTYQGWQDSSTWSRGQAWAIYGYVMVYRFLKKERFLSYSIGLLEYFEANVASDNVPFSDFDAPEDEFNPKDSSSTAIVGSALFELFETTGDPVYLETAQSYLSSVL-SADYYQPSATDGWESILRKASSEWDSDEVGAVFGDYFLLEAMVRF 696
            +GTYQGWQD STWSRGQAWAIYG+ MV+R+L ++RFL Y+I  L YF  N+  DNVP++DFD P D  NP DSS+TAIV SALFELFE TG+P YLE AQ +L S+L S+ Y+  SATDGW++ILR +++ W    +G V  DYFLLE++VR+
Sbjct:    5 RGTYQGWQDDSTWSRGQAWAIYGFTMVHRYLTEQRFLDYTINTLSYFIDNLPDDNVPYADFDDPVDSDNPNDSSATAIVTSALFELFELTGEPSYLEKAQEFLPSLLLSSTYFDSSATDGWQTILRNSTAAWGDAAMGFVTADYFLLESIVRY 157          
BLAST of mRNA_H-paniculata_contig26462.7222.1 vs. uniprot
Match: UPI001F1B9B3F (glycoside hydrolase family 88 protein n=1 Tax=Vibrio hippocampi TaxID=654686 RepID=UPI001F1B9B3F)

HSP 1 Score: 194 bits (492), Expect = 2.020e-56
Identity = 106/239 (44.35%), Postives = 142/239 (59.41%), Query Frame = 1
Query:    1 IPAFWSWM----NPSRRPEWDMAVNVDMMMNMEIMLWAAENGGNDAYVTAVEGHADATWKDIVRDDNSTFHVAAYDPATGDLVDQGTYQGWQDSSTWSRGQAWAIYGYVMVYRFLKKERFLSYSIGLLEYFEANV---ASDNVPFSDFDAPEDEFNPKDSSSTAIVGSALFELFETTGDPVYLETAQSYLSSVLSADYYQPSATDGWESILRKASSEWDSDEVGAVFGDYFLLEAMVRF 696
            I AF SW     NP+  P     VN+D +MNME++LW   N     Y      HAD TW+  VRD+ ST+HV +Y+   G +  + T+QGWQ  STWSRGQAW++Y Y M YRF   ER L  SI   +YF +      +D VP+SDFDAP D  NPKD+S+TA+V S L EL+  T D  YL  A++ L S+   +Y        +++IL+K S +W   EVG +FGDYF +EA+ R+
Sbjct:  165 IGAFRSWNQRIDNPTTLP---FEVNIDQLMNMELVLWVGANADKPEYTQMAVSHADKTWQHGVRDNGSTYHVVSYN-LDGSVDSKRTHQGWQTDSTWSRGQAWSVYAYAMYYRFTGLERMLERSIKSYDYFLSATQQQTNDLVPYSDFDAPIDVRNPKDTSATAVVASGLLELYHITKDEKYLNDAEAMLISLAKPEYLARETE--YQAILKKGSEKWGEPEVGTIFGDYFFIEALYRW 397          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26462.7222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQV0_9PHAE2.940e-10966.95GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FQV4_ECTSI4.790e-10867.38Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
D7FUJ9_ECTSI3.740e-10365.24Unsaturated glucuronyl hydrolase, family GH88 n=3 ... [more]
A0A6H5KCI0_9PHAE1.190e-9565.53GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LHN8_ECTSI1.390e-7166.28Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
A0A6H5JQR3_9PHAE2.720e-6752.75GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6N6ZAI7_9BACT7.070e-6549.37Putative unsaturated glucuronyl hydrolase n=1 Tax=... [more]
R9PSV9_AGAAL4.190e-5945.19Putative unsaturated glucuronyl hydrolase n=4 Tax=... [more]
D7FUK3_ECTSI8.760e-5960.78Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
UPI001F1B9B3F2.020e-5644.35glycoside hydrolase family 88 protein n=1 Tax=Vibr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26462contigH-paniculata_contig26462:138..3054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score315.8
Seed ortholog evalue1.6e-83
Seed eggNOG ortholog2880.D7FQV4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size696
Cds size675
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26462.7222.1prot_H-paniculata_contig26462.7222.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26462 159..3054 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.8579667-UTR-H-paniculata_contig26462:137..1581622929791.8579667-UTR-H-paniculata_contig26462:137..158Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26462 138..158 +
1691481012.6090937-UTR-H-paniculata_contig26462:137..1581691481012.6090937-UTR-H-paniculata_contig26462:137..158Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26462 138..158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.8704658-CDS-H-paniculata_contig26462:158..2831622929791.8704658-CDS-H-paniculata_contig26462:158..283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26462 159..283 +
1691481012.6200547-CDS-H-paniculata_contig26462:158..2831691481012.6200547-CDS-H-paniculata_contig26462:158..283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26462 159..283 +
1622929791.8824053-CDS-H-paniculata_contig26462:806..9041622929791.8824053-CDS-H-paniculata_contig26462:806..904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26462 807..904 +
1691481012.6300488-CDS-H-paniculata_contig26462:806..9041691481012.6300488-CDS-H-paniculata_contig26462:806..904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26462 807..904 +
1622929791.8959062-CDS-H-paniculata_contig26462:1884..20141622929791.8959062-CDS-H-paniculata_contig26462:1884..2014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26462 1885..2014 +
1691481012.6428666-CDS-H-paniculata_contig26462:1884..20141691481012.6428666-CDS-H-paniculata_contig26462:1884..2014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26462 1885..2014 +
1622929791.9139216-CDS-H-paniculata_contig26462:2431..25681622929791.9139216-CDS-H-paniculata_contig26462:2431..2568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26462 2432..2568 +
1691481012.656995-CDS-H-paniculata_contig26462:2431..25681691481012.656995-CDS-H-paniculata_contig26462:2431..2568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26462 2432..2568 +
1622929791.93167-CDS-H-paniculata_contig26462:2869..30541622929791.93167-CDS-H-paniculata_contig26462:2869..3054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26462 2870..3054 +
1691481012.667518-CDS-H-paniculata_contig26462:2869..30541691481012.667518-CDS-H-paniculata_contig26462:2869..3054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26462 2870..3054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26462.7222.1

>prot_H-paniculata_contig26462.7222.1 ID=prot_H-paniculata_contig26462.7222.1|Name=mRNA_H-paniculata_contig26462.7222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=225bp
MNPSRRPEWDMAVNVDMMMNMEIMLWAAENGGNDAYVTAVEGHADATWKD
IVRDDNSTFHVAAYDPATGDLVDQGTYQGWQDSSTWSRGQAWAIYGYVMV
YRFLKKERFLSYSIGLLEYFEANVASDNVPFSDFDAPEDEFNPKDSSSTA
IVGSALFELFETTGDPVYLETAQSYLSSVLSADYYQPSATDGWESILRKA
SSEWDSDEVGAVFGDYFLLEAMVRF
back to top

mRNA from alignment at H-paniculata_contig26462:138..3054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26462.7222.1 ID=mRNA_H-paniculata_contig26462.7222.1|Name=mRNA_H-paniculata_contig26462.7222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2917bp|location=Sequence derived from alignment at H-paniculata_contig26462:138..3054+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCCGGCGTTCTGGTCGTGGATGAACCCTTCCAGGCGGCCGGAGTGGGA CATGGCGGTGAACGTGGACATGATGATGAACATGGAGATCATGCTGTGGG CAGCGGAGAATGGCGGCAACGACGCCTACGTGACTGCTGTCGAAGGGTGA GGAAATAAGAGAGAGGGGGGCGGGAGGGGAGCAGGCAGGGGCAGGAAGAG AGAAAGGCAGAGAGAAAGACAAAGACGAGAGACAGATAGATGGAGACACA CAGAGACAGACATACGATAAAAATAGGACTCTTCTGTGGATTTTGTCTCT CGTACAGCATGCCCTCAGCTGTATACTGTAGTGCACCCGCTACATGGGGA TAAGCCTCCCGTCACGATGAAACAGCAAAATGACTCATGTAGTGTACAAG CCTCTCTCTTGTATTTATAGTGTACTATTGGGAGTATATTTTACTGTTTG TATGGTTTTTCCTCCCTCTTTTTTAACCACCGCATCGGAATCGATCTCTG CATATGCCATGCCATGTCATGTCATGTCATGGATTTGATGAACCTCGCCC CCTCCCACCCACCCACTGCGTCCTCTCTTCCTCTCGGATTTTTGCCCGGA TTGAATTTGTGGATGACTGTTGTGACTTACGGGGCGCACTCACAACCCGC CAACATGAACATAATACAGTCATGCGGATGCGACGTGGAAAGACATCGTT CGGGATGACAACAGCACATTTCATGTCGCCGCATACGATCCCGCCACGGG CGATTTGGTAGACCAAGGTATGTTATTTGGTTTTCGTTTTCGTTTTGATG TTTGATTTCGAGTTTTTGGCTATGTCTTGAAGGTTTCAGTTCGCGAGTCC GATGTCATTATCCACAAGTCCGCGCCAATTACATTGGGAACTCGCGGTCA GACGATAGAAGAAATCCCTCACGTTGGACTTGACGACTGTAGTATGTGCC GTAATTACCGGGAGGCGTCGCGCTGGGGTGGGAAAGGGTCAACAAGTACC GAAAGATCAAATGATTTATTAAGAATGTAGGAACAGGAAAGAGAGGTTTG CTCAGCATCAACCAGTCGCTGAATCATTTGTCATTATCCACAAGTTGAAC AAAACTAGCGGAGGGCGCGGTCAGTTGAATTATAGCTCTGAAGCTCACAT GATAACTCCACTGTACCCATGTTGAGGTAGGTTATGCAGCTGATGTCATA CTTTAGTTGTTTACACTTGTCAGCAAAATTAGATAATGATCAATAAGAGG GGGGGAGGATACCCGTGTTTTGCATGCCACCTTAGTTGTTAGGCGATTGA CCACGCATCCTCGACAGGGGTGCGAATATTTTTGTTTCAAATGCGGTCTT TTTTAGAGAATATTTGGAGAGCGGAGACTGTCTGACCTTAGGAGATCGAA AGAACTACACCGTTAGTCCATCGTGACAAAAGCAGATGGATCTCCTTAGC AAGAAGATTTTTCCAACGGAACACTCTTTGTTGTCGGGAAATAAGGCCGT AGAGCTAGTTGTTGAGATAATTGCGTTCGAAGAGCAATCGCATCATCCCG GTGATGTCTATACCTCCTCTTATCCTCTACTGAGTTTGTTTTACGGCACT GCTCGTGACTTGTTTTTCCTCCCTCCCAATCACTGTCCAAATGTCGATGT ACTGGTATTGGAGTATGGAAAATGTTTCGTGTATTGGAGTATGACAAACG TTTCCCTCCTCCCCATTTTCTTTTTTCGTGAAACGCTTTTGTTGCAGGGA CATACCAAGGGTGGCAGGACAGTTCTACCTGGAGCCGGGGTCAGGCGTGG GCGATCTACGGCTACGTGATGGTCTACCGATTCCTCAAGAAAGAGAGATT CTTGTCATACTCCATTGGACTCCTAGAGTGAGCGCAGTATAGACATTGTG ACCCTGGTTTTTAGTTTTTAGGGTTTTTTTCTCTAGGTACGTACTATTTT GGAGCTATTCGTGCGCCCGCTGTCCGTCTAGTGTTAATTGGTTTATTGAA TTGTATACCTTTTATCCCCTTTTATCAAGTCATTATTTATCCTGTTTTAA TATCTGTAATAAAAAAGGTATCCTTTATCTACTTTTTGTAGAATGTTCCC TGCCCGCGTTTGTGTTTGCGTTTGCACTTTTTTATTTATTTATTTTCTAC CTTTATCTCCTTTTATCAAGTCACTAGTTGTCATGTTTTAATATTTGTAA TAAAAAAGCTATTTATCCACTTTTTTAGAATATTCCCTGCCCGCGTTTGT GTTTGCGTTGCGCTTTTTGTTTTTTCCCTTTCCTCCTCGACAAGGTACTT CGAGGCTAACGTGGCCAGTGATAATGTTCCCTTCTCTGACTTCGATGCCC CGGAAGATGAATTCAACCCCAAGGACTCGTCCTCTACTGCTATTGTCGGG TCGGCGCTCTTCGAGCTGTTCGAGACCACCGGTGAGATGCGGTATAGTAG AGGCATTAGCTAAGCTGACGGTAGAGCTCGATCTTTTTTTATTAACAATT CACGACAGGGACAAGGTGGTATATGTTTGTGTTCCGAAGATTATAAAATT GTGCCGACAATGCTTATACTTAATCAATAAGCAGTATGTAAAGGTGACGG ACGGGTAAAGCCACAAAAAAGCCAAGAACCAAAGCTAAACGCCAAAATTC AAGAGAAAATAACCAAGAGCCAAAGACCCGAAAAAAAATATTTCCCCCCT CTCTTTCCCCGTCAACAAAACAACAAACCAAGGGGATCCGGTCTACCTGG AAACGGCGCAAAGTTACCTGTCGTCCGTGCTGTCGGCGGATTACTACCAA CCGTCGGCCACCGATGGTTGGGAATCTATCCTGCGGAAGGCATCTTCAGA GTGGGATTCGGACGAAGTGGGAGCCGTCTTTGGCGACTATTTCCTGCTCG AAGCCATGGTGCGTTTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig26462:138..3054+

>mRNA_H-paniculata_contig26462.7222.1 ID=mRNA_H-paniculata_contig26462.7222.1|Name=mRNA_H-paniculata_contig26462.7222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at H-paniculata_contig26462:138..3054+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCCTTCCAGGCGGCCGGAGTGGGACATGGCGGTGAACGTGGACAT
GATGATGAACATGGAGATCATGCTGTGGGCAGCGGAGAATGGCGGCAACG
ACGCCTACGTGACTGCTGTCGAAGGATGAACCCTTCCAGGCGGCCGGAGT
GGGACATGGCGGTGAACGTGGACATGATGATGAACATGGAGATCATGCTG
TGGGCAGCGGAGAATGGCGGCAACGACGCCTACGTGACTGCTGTCGAAGG
TCATGCGGATGCGACGTGGAAAGACATCGTTCGGGATGACAACAGCACAT
TTCATGTCGCCGCATACGATCCCGCCACGGGCGATTTGGTAGACCAAGTC
ATGCGGATGCGACGTGGAAAGACATCGTTCGGGATGACAACAGCACATTT
CATGTCGCCGCATACGATCCCGCCACGGGCGATTTGGTAGACCAAGGGAC
ATACCAAGGGTGGCAGGACAGTTCTACCTGGAGCCGGGGTCAGGCGTGGG
CGATCTACGGCTACGTGATGGTCTACCGATTCCTCAAGAAAGAGAGATTC
TTGTCATACTCCATTGGACTCCTAGAGGACATACCAAGGGTGGCAGGACA
GTTCTACCTGGAGCCGGGGTCAGGCGTGGGCGATCTACGGCTACGTGATG
GTCTACCGATTCCTCAAGAAAGAGAGATTCTTGTCATACTCCATTGGACT
CCTAGAGTACTTCGAGGCTAACGTGGCCAGTGATAATGTTCCCTTCTCTG
ACTTCGATGCCCCGGAAGATGAATTCAACCCCAAGGACTCGTCCTCTACT
GCTATTGTCGGGTCGGCGCTCTTCGAGCTGTTCGAGACCACCGGTACTTC
GAGGCTAACGTGGCCAGTGATAATGTTCCCTTCTCTGACTTCGATGCCCC
GGAAGATGAATTCAACCCCAAGGACTCGTCCTCTACTGCTATTGTCGGGT
CGGCGCTCTTCGAGCTGTTCGAGACCACCGGGGATCCGGTCTACCTGGAA
ACGGCGCAAAGTTACCTGTCGTCCGTGCTGTCGGCGGATTACTACCAACC
GTCGGCCACCGATGGTTGGGAATCTATCCTGCGGAAGGCATCTTCAGAGT
GGGATTCGGACGAAGTGGGAGCCGTCTTTGGCGACTATTTCCTGCTCGAA
GCCATGGTGCGTTTTGGGATCCGGTCTACCTGGAAACGGCGCAAAGTTAC
CTGTCGTCCGTGCTGTCGGCGGATTACTACCAACCGTCGGCCACCGATGG
TTGGGAATCTATCCTGCGGAAGGCATCTTCAGAGTGGGATTCGGACGAAG
TGGGAGCCGTCTTTGGCGACTATTTCCTGCTCGAAGCCATGGTGCGTTTT
back to top