mRNA_H-paniculata_contig26440.7217.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26440.7217.1
Unique NamemRNA_H-paniculata_contig26440.7217.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26440.7217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26440contigH-paniculata_contig26440:328..2645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1908
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26440.7217.1prot_H-paniculata_contig26440.7217.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26440 440..1230 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.4618287-UTR-H-paniculata_contig26440:327..4391622929791.4618287-UTR-H-paniculata_contig26440:327..439Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26440 328..439 +
1691481012.4421442-UTR-H-paniculata_contig26440:327..4391691481012.4421442-UTR-H-paniculata_contig26440:327..439Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26440 328..439 +
1622929791.508077-UTR-H-paniculata_contig26440:1230..26451622929791.508077-UTR-H-paniculata_contig26440:1230..2645Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26440 1231..2645 +
1691481012.4734879-UTR-H-paniculata_contig26440:1230..26451691481012.4734879-UTR-H-paniculata_contig26440:1230..2645Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26440 1231..2645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.4759178-CDS-H-paniculata_contig26440:439..7051622929791.4759178-CDS-H-paniculata_contig26440:439..705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26440 440..705 +
1691481012.453553-CDS-H-paniculata_contig26440:439..7051691481012.453553-CDS-H-paniculata_contig26440:439..705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26440 440..705 +
1622929791.4896138-CDS-H-paniculata_contig26440:1115..12301622929791.4896138-CDS-H-paniculata_contig26440:1115..1230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26440 1116..1230 +
1691481012.4653757-CDS-H-paniculata_contig26440:1115..12301691481012.4653757-CDS-H-paniculata_contig26440:1115..1230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26440 1116..1230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26440.7217.1

>prot_H-paniculata_contig26440.7217.1 ID=prot_H-paniculata_contig26440.7217.1|Name=mRNA_H-paniculata_contig26440.7217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MGEFNGRTLAEDVTTRDVTRHNTGKRHEEGIGHITTPELTNLALKRNAVD
VQLHLFISAMFCLRLNISGLVKHPLVVEELKSLKSLDDMCSNISLMKTTL
EGLGPLRATKGGQCRLYRPLNRQNFV*
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mRNA from alignment at H-paniculata_contig26440:328..2645+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26440.7217.1 ID=mRNA_H-paniculata_contig26440.7217.1|Name=mRNA_H-paniculata_contig26440.7217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2318bp|location=Sequence derived from alignment at H-paniculata_contig26440:328..2645+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCTCTCGCAAATCTAGACCTCACCTGGAAATACATCCGATAGCGTGGG
ACGCAGATTATGTGCCTCATTGGAATCGTGGTCACCGTCGGATAGATGCG
GAGTTTGACTCCATGGGTGAATTCAACGGGAGGACATTAGCAGAGGATGT
CACAACGCGGGACGTGACACGGCACAATACGGGCAAGCGCCACGAAGAAG
GGATAGGGCACATCACTACCCCGGAGCTTACGAATCTAGCTTTGAAGAGA
AACGCTGTGGATGTGCAGCTACACCTGTTTATCTCGGCGATGTTTTGCCT
CCGGTTAAACATCTCAGGTCTCGTTAAGCACCCCCTTGTGGTTGAGGAGC
TCAAATCTCTCAAGTCGCTCGATGACATGTGAGTTGTTTTTTCATGTTTC
CCTGGACTTGAAAGGGCGTGAATTGTTGTTCTATGTTTCGAGGTGTTGGG
GATGCACTACATTTTGCCGGGTGTACCAACTTCTGCAAGAGGGCGTTTGC
AATAGCGGCGAAGATTACCAACAAGCGGTCTCTGCGAAGGCTTTTCGTTT
CGAGGGGAAATCCGTGTGCAATTTGCATTTCATTGATTTCCCTATGCTCG
ATCCTGCAAGGTTGGGTTCACAGTTGTCAGTGGAGAATCGTCATACGCTA
GTGCTCGGTGGCGATGTCTTGACCCTTTTCCCATGCTGTTTGATGAGCTC
TCTTTCCTTCTCTCTGTTTATGTGTTCTCTTTCTCTATTTTCCTTCCTCT
CGTGCCCTTCCTCTCTATCGCTGTACGTCGCTATCTAGGTGTTCCAACAT
AAGTTTGATGAAAACTACGCTGGAAGGACTTGGGCCGCTGAGAGCGACCA
AAGGAGGACAATGTCGTCTCTACCGACCCTTGAATAGGCAGAACTTTGTT
TAGGATGACCCTACCTGCCATGTACACACTCGATGGGTACGGTCAAGACA
GGCTCTTCAGAGTTTGTTTTGGCAGTTGCCGCTGAGACTGCTCGCCAGTG
GAATCGTAAGGCGAGTCAGGAATACGGATTGTCATAACTCGACGTCGGAA
GTATATTTCGTAGATCATATGTTAGAGTGGTGATGGTGGTGGGTGTTTGT
TTTGGAACATTTGCAGATGACACTGAGTTCATTCTCGGGGTGTCGTTGGT
ATTCGCAGTTTCCAAACAATGAGAACTGGAGCTAGAGGAATGATTACGCC
TAGTTCAGAGTCACAGTATGCCCACGTTTGTTTTTTCCCCACCAGGGATT
TTTTTTTTCTGATTCTTTTGCATTTGGTGAGAGGGTGGGCGTTTTCTTTT
GCAAACTGCGAGAGAGAGCGGTTTACCGGCCTGCGTGGGTCATGGCCTGT
ACGGGGCACGGTAACAAATCACGGAGCATGGAAGCGATGTCCTGTTTCCT
TTCCTCTTGAGTAAATCCGTCGTTCAAGGTAAAATACACATACCATGTAT
GTCATATTTTTGGGCATGTGTCGAAAAGGTAACCACTGAGCAAATAGATA
GGATTATATTTTTCAGCAGACAGTCGGGCGAAATTAGTTAATTGAATTTC
GTGCCGAGTAAAGTTGCGGCCAGGAAATAGTGTGGATGGCAGTTTTCTCA
ACTGTTGCTGTAGGGTAGCGAGAGCGGTCCATTTCTTATGCCGATGACAT
TGTTTTCAGGGGTCTCGGGGAGAACCCGGAGTCTCCAGATATCAACCAAA
AAGAATGCAGAAGGGCATTTTTATTGTTGTGATAAGTATGATGTACACTC
TGTTCGTAGCTGTCGTTTTTGCTACGGAATTGTAGGTATGTACGTTATGC
CAAACCATATCTCCTAGAATATGGAACGTTGGCTGCGCCACGGAATTTTC
AACGGAACTCGTTGACTTTGATCCTTTGCGGTAGATTCCTTCCCAGGCGC
CAGGGTGTTTTGCTTTGTTGAAGGCGTGCATTCGTGAGTATCTGTGCGGG
GCAATTTTTGCCCCTTCGATCCTCGCGTGATCTGCTGTTACAGATTGTAG
CAAATGGTGCAGCTCCACGGATATCGTTAGGCTGTACTTGACCTGGCTAT
ACTCAACAGGGAGATCGTCGAAGTACTGTACATCATGTAGCTTTGGCTTC
TGTCCCATGCACGACAGACGCTCGAACAATGCGTCGATTGAAATGAAAGT
TTTGCCGCATATGTTGGCATCATTACTATGATGTAATGACTGAATCATCC
ATTTTCAGTGCTAGCCTAATGCGATATAGCTAGAAACAGCTCGAATCGAA
CACCAGCTCGACTGAACACCACGCGAACCAACTGGTAAAAGGGCTCTTGG
GACTAATTCGAGGTCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig26440:328..2645+

>mRNA_H-paniculata_contig26440.7217.1 ID=mRNA_H-paniculata_contig26440.7217.1|Name=mRNA_H-paniculata_contig26440.7217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig26440:328..2645+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGAATTCAACGGGAGGACATTAGCAGAGGATGTCACAACGCGGGA
CGTGACACGGCACAATACGGGCAAGCGCCACGAAGAAGGGATAGGGCACA
TCACTACCCCGGAGCTTACGAATCTAGCTTTGAAGAGAAACGCTGTGGAT
GTGCAGCTACACCTGTTTATCTCGGCGATGTTTTGCCTCCGGTTAAACAT
CTCAGGTCTCGTTAAGCACCCCCTTGTGGTTGAGGAGCTCAAATCTCTCA
AGTCGCTCGATGACATATGGGTGAATTCAACGGGAGGACATTAGCAGAGG
ATGTCACAACGCGGGACGTGACACGGCACAATACGGGCAAGCGCCACGAA
GAAGGGATAGGGCACATCACTACCCCGGAGCTTACGAATCTAGCTTTGAA
GAGAAACGCTGTGGATGTGCAGCTACACCTGTTTATCTCGGCGATGTTTT
GCCTCCGGTTAAACATCTCAGGTCTCGTTAAGCACCCCCTTGTGGTTGAG
GAGCTCAAATCTCTCAAGTCGCTCGATGACATGTGTTCCAACATAAGTTT
GATGAAAACTACGCTGGAAGGACTTGGGCCGCTGAGAGCGACCAAAGGAG
GACAATGTCGTCTCTACCGACCCTTGAATAGGCAGAACTTTGTTTAGGTG
TTCCAACATAAGTTTGATGAAAACTACGCTGGAAGGACTTGGGCCGCTGA
GAGCGACCAAAGGAGGACAATGTCGTCTCTACCGACCCTTGAATAGGCAG
AACTTTGTTTAG
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