mRNA_H-paniculata_contig26434.7216.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26434.7216.1
Unique NamemRNA_H-paniculata_contig26434.7216.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26434.7216.1 vs. uniprot
Match: D7G396_ECTSI (Fucosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G396_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 9.060e-34
Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    4 QEKDGFGSPDAVVAFVSNCKVSGATKRTQYMSELMKHGTVHSIGKCLHNRDEPILVEGEGTSIRQQNKIEVLRRYKFYLAFENNNR 261
            ++KDGFGSPDA+ AFVSNCK +GAT R  YM ELMKH TVHS G CLHNR+EP LV G G + RQ+NK+ VL  YKF LAFENNN+
Sbjct:  241 KQKDGFGSPDAIAAFVSNCKAAGATNRFAYMEELMKHATVHSFGYCLHNREEPQLVPGSGATNRQENKVAVLGHYKFLLAFENNNQ 326          
BLAST of mRNA_H-paniculata_contig26434.7216.1 vs. uniprot
Match: A0A6H5KXC7_9PHAE (Fucosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC7_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.240e-32
Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    4 QEKDGFGSPDAVVAFVSNCKVSGATKRTQYMSELMKHGTVHSIGKCLHNRDEPILVEGEGTSIRQQNKIEVLRRYKFYLAFENNNR 261
            ++KDGFGSPDA+ AFVSNCK +GAT R  YM ELMKH TVHS G CLHNR+EP LV G G + RQ+NK+ VL  YKF LAFENNN+
Sbjct:  537 KQKDGFGSPDAIAAFVSNCKAAGATNRFAYMEELMKHATVHSFGYCLHNREEPQLVPGGGATNRQENKVAVLGHYKFLLAFENNNQ 622          
BLAST of mRNA_H-paniculata_contig26434.7216.1 vs. uniprot
Match: A0A7S2MS75_9STRA (Fucosyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MS75_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.420e-18
Identity = 44/75 (58.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   31 DAVVAFVSNCKVSGATKRTQYMSELMKHGTVHSIGKCLHNRDEPILVEGEGTSIRQQNKIEVLRRYKFYLAFENN 255
            DA V F SNCK +GA  R +Y  ELMKH TVHS GKCLHN +EP      G   R +NK  VL +YK+YLAFENN
Sbjct:  238 DAAVMFTSNCKNAGADSRLKYFEELMKHMTVHSYGKCLHNTEEP----PAGKRSRNENKRRVLSKYKWYLAFENN 308          
BLAST of mRNA_H-paniculata_contig26434.7216.1 vs. uniprot
Match: D3BUG3_POLPP (Fucosyltransferase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BUG3_POLPP)

HSP 1 Score: 74.3 bits (181), Expect = 1.250e-13
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   16 GFGSPDAVVAFV-SNCKVSGATKRTQYMSELMKHGTVHSIGKCLHNRDEPILVEGEGTSIRQQNKIEVLRRYKFYLAFENNN 258
            GF     ++AFV SNCK  GA KR +Y+ ELMKH  V S G CL N+D+  L        R Q K+++ ++YKF LAFENNN
Sbjct:   95 GFKERPNLIAFVASNCKAGGADKRAEYVRELMKHIKVDSYGLCLQNQDKEALNRNTARD-RFQAKMDLFKKYKFVLAFENNN 175          
BLAST of mRNA_H-paniculata_contig26434.7216.1 vs. uniprot
Match: A0A151Z6N2_9MYCE (Fucosyltransferase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z6N2_9MYCE)

HSP 1 Score: 65.9 bits (159), Expect = 1.350e-10
Identity = 38/85 (44.71%), Postives = 47/85 (55.29%), Query Frame = 1
Query:    4 QEKDGFGSPDAVVAFVSNCKVSGATKRTQYMSELMKHGTVHSIGKCLHNRDEPILVEGEGTSIRQQNKIEVLRRYKFYLAFENNN 258
            ++K GF      V   SNC   GA +RTQY+ +LM++  V S G CL N+    L        R  +KIEV  RYKF LAFENNN
Sbjct:  148 KQKQGFA-----VFVASNCHSGGALQRTQYVEDLMRYIPVDSFGLCLQNQPSEALDRNTARE-RFAHKIEVFSRYKFVLAFENNN 226          
BLAST of mRNA_H-paniculata_contig26434.7216.1 vs. uniprot
Match: F4QDU0_CAVFA (Fucosyltransferase n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QDU0_CAVFA)

HSP 1 Score: 64.3 bits (155), Expect = 4.950e-10
Identity = 36/80 (45.00%), Postives = 44/80 (55.00%), Query Frame = 1
Query:   19 FGSPDAVVAFVSNCKVSGATKRTQYMSELMKHGTVHSIGKCLHNRDEPILVEGEGTSIRQQNKIEVLRRYKFYLAFENNN 258
            F      V   SNCK  GA  RT Y+ ELMK+  V S G CL N+ +  L        R Q K+E+ ++YKF LAFENNN
Sbjct:  213 FKEQHFAVFVASNCKRGGADDRTAYVEELMKYIPVDSFGLCLQNQPKDALNRNTVRD-RYQAKMELFKKYKFILAFENNN 291          
BLAST of mRNA_H-paniculata_contig26434.7216.1 vs. uniprot
Match: A0A1Y2B4E3_9FUNG (Fucosyltransferase n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2B4E3_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 2.540e-8
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   22 GSPDAVVAFVSNCKVSGATKRTQYMSELMKHGTVHSIGKCLHNRDEPILVEGEGTSIRQQNKIEVLRRYKFYLAFENN 255
            G+      F+SNC+   + +R  Y+ ELM +  + S GKCLHN+DE    +G+    + + K+ ++R+YKF LAFEN+
Sbjct:  137 GNKAIAAVFISNCQ---SKERLIYIKELMNYVKIDSYGKCLHNKDERKEDKGKD---QYETKLNIIRKYKFTLAFENS 208          
BLAST of mRNA_H-paniculata_contig26434.7216.1 vs. uniprot
Match: Q54L56_DICDI (Fucosyltransferase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54L56_DICDI)

HSP 1 Score: 58.2 bits (139), Expect = 7.270e-8
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 1
Query:    4 QEKDGFGSPDAVVAFVS-NCKVSGATKRTQYMSELMKHGTVHSIGKCLHNR-----DEPILVEGE-GTSIRQQNKIEVLRRYKFYLAFENNN 258
            ++K+GF      V F+S NC   GA  RT Y+ E+MKH  V ++G+CL+N+     D P  V  + G S+R   K  VL +YKF LAFENNN
Sbjct:  170 EDKNGF------VGFMSTNCDGGGAIYRTCYIIEMMKHTQVDAMGECLNNKKLNKKDFPHAVFDDLGDSLRI--KELVLSKYKFSLAFENNN 253          
BLAST of mRNA_H-paniculata_contig26434.7216.1 vs. uniprot
Match: A0A5A8C3N2_CAFRO (Fucosyltransferase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C3N2_CAFRO)

HSP 1 Score: 56.6 bits (135), Expect = 2.430e-7
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   40 VAFVSNCKVSGATKRTQYMSELMKHG-TVHSIGKCLHNRD-EPILVEGEGTSIRQQNKIEVLRRYKFYLAFENNN 258
            VA +SNC  +G  +R +Y+ EL++ G TVH +G C HN+D  P      G  +   +KI++LR YKF LAFEN N
Sbjct:  201 VAVISNC--AGHNRRLEYIRELVRAGVTVHHLGACDHNKDWSPPSGMSRGRFV---DKIDMLRPYKFTLAFENTN 270          
BLAST of mRNA_H-paniculata_contig26434.7216.1 vs. uniprot
Match: A0A5A8DDH6_CAFRO (Fucosyltransferase n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DDH6_CAFRO)

HSP 1 Score: 56.6 bits (135), Expect = 2.530e-7
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   40 VAFVSNCKVSGATKRTQYMSELMKHG-TVHSIGKCLHNRD-EPILVEGEGTSIRQQNKIEVLRRYKFYLAFENNN 258
            VA +SNC  +G  +R +Y+ EL++ G TVH +G C HN+D  P      G  +   +KI++LR YKF LAFEN N
Sbjct:  439 VAVISNC--AGHNRRLEYIRELVRAGVTVHHLGACDHNKDWSPPSGMSRGRFV---DKIDMLRPYKFTLAFENTN 508          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26434.7216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G396_ECTSI9.060e-3468.60Fucosyltransferase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KXC7_9PHAE1.240e-3268.60Fucosyltransferase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A7S2MS75_9STRA1.420e-1858.67Fucosyltransferase n=1 Tax=Dictyocha speculum TaxI... [more]
D3BUG3_POLPP1.250e-1348.78Fucosyltransferase n=1 Tax=Polysphondylium pallidu... [more]
A0A151Z6N2_9MYCE1.350e-1044.71Fucosyltransferase n=1 Tax=Tieghemostelium lacteum... [more]
F4QDU0_CAVFA4.950e-1045.00Fucosyltransferase n=1 Tax=Cavenderia fasciculata ... [more]
A0A1Y2B4E3_9FUNG2.540e-838.46Fucosyltransferase n=1 Tax=Neocallimastix californ... [more]
Q54L56_DICDI7.270e-844.57Fucosyltransferase n=1 Tax=Dictyostelium discoideu... [more]
A0A5A8C3N2_CAFRO2.430e-745.33Fucosyltransferase n=1 Tax=Cafeteria roenbergensis... [more]
A0A5A8DDH6_CAFRO2.530e-745.33Fucosyltransferase n=3 Tax=Cafeteria roenbergensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26434contigH-paniculata_contig26434:485..1355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue6.4e-28
Seed eggNOG ortholog2880.D7G396
Preferred nameFUT13
KEGG rclassRC00002
KEGG koko:K00753,ko:K01509,ko:K09669,ko:K14412
KEGG ReactionR00086,R06015,R09318,R11318
KEGG Pathwayko00230,ko00513,ko01100,ko04742,map00230,map00513,map01100,map04742
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0005996,GO:0006004,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0008150,GO:0008152,GO:0008417,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010493,GO:0012505,GO:0016020,GO:0016051,GO:0016052,GO:0016740,GO:0016757,GO:0016758,GO:0018392,GO:0019317,GO:0019318,GO:0019320,GO:0019538,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0033692,GO:0034637,GO:0034645,GO:0036065,GO:0036211,GO:0042354,GO:0042355,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0046920,GO:0070085,GO:0071704,GO:0097708,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901575,GO:1901576
EggNOG free text desc.alpha-(1->3)-fucosyltransferase activity
EggNOG OGsKOG2619@1,KOG2619@2759
EC2.4.1.214,2.4.1.65,3.6.1.3
COG Functional cat.M
CAZyGT10
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.4007313-CDS-H-paniculata_contig26434:484..6021622929791.4007313-CDS-H-paniculata_contig26434:484..602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26434 485..602 -
1691481012.416599-CDS-H-paniculata_contig26434:484..6021691481012.416599-CDS-H-paniculata_contig26434:484..602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26434 485..602 -
1622929791.415097-CDS-H-paniculata_contig26434:1203..13551622929791.415097-CDS-H-paniculata_contig26434:1203..1355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26434 1204..1355 -
1691481012.4286966-CDS-H-paniculata_contig26434:1203..13551691481012.4286966-CDS-H-paniculata_contig26434:1203..1355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26434 1204..1355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26434.7216.1prot_H-paniculata_contig26434.7216.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26434 485..1355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26434.7216.1

>prot_H-paniculata_contig26434.7216.1 ID=prot_H-paniculata_contig26434.7216.1|Name=mRNA_H-paniculata_contig26434.7216.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
IQEKDGFGSPDAVVAFVSNCKVSGATKRTQYMSELMKHGTVHSIGKCLHN
RDEPILVEGEGTSIRQQNKIEVLRRYKFYLAFENNNRYL*
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mRNA from alignment at H-paniculata_contig26434:485..1355-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26434.7216.1 ID=mRNA_H-paniculata_contig26434.7216.1|Name=mRNA_H-paniculata_contig26434.7216.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=871bp|location=Sequence derived from alignment at H-paniculata_contig26434:485..1355- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCAGGAAAAAGACGGATTCGGATCGCCAGACGCGGTTGTGGCGTTTGT GTCTAACTGCAAGGTGTCGGGAGCCACGAAACGCACTCAGTACATGTCTG AGCTGATGAAACACGGCACGGTACATTCCATCGGAAAGTGTTTGCACAAC AGGTGGGAATGCCTGTCAGAGGCCTGCAACGCTAGCCGCCCAAAAAGCGT CGTCGGCACTAGGGATGCGTATCGGCATAATCGTATGATTTGATGAGTCG ATGTGGTATCGTACTTTCGCGCGTGCTGGGCGTGGGTCTTCACTTCCTCG GCTGCGTTCCATGCACGCATGTAGCGAGCAGCTCTTTCCTCCACAATACC GTACCATTAGGCGGCATCGACTCTTGCACGCATCTCCCACGTTGTGATCG GGATGCCAAAGTCGTTTACGTCTTCGAAGACGCACTGTGTCTATTGCCTC GCAGGCGGGCCCCTGCCCCTTCTTCCTTCGTCGAGTTCCTCGCTTATCAC AGTAATAACCTTGAAATTCGTTCATCCATATATTGCAACTTATTCCTGAC GCTGACGTCACGACTTTGGTATCATCATATCCCTCTTCTGATACGATGCC TCCATCAACTCTTATCCGGTCCACATCCAATCTCCGTAGACGCCATGTAC TGCCAGTCAACAAAAACAACGTGTGCTTCTAAAGTTTTTCTCGTGTTCTT TTGATGTGAATTGTGTTCTTGCTTCTTTTTTTTTTTCTTTTTTTTTTTTG CAGAGACGAACCGATACTCGTGGAGGGTGAGGGCACCTCGATTCGACAGC AGAACAAGATTGAGGTTCTCCGGCGATACAAGTTCTACCTGGCATTTGAA AATAACAATAGGTACTTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig26434:485..1355-

>mRNA_H-paniculata_contig26434.7216.1 ID=mRNA_H-paniculata_contig26434.7216.1|Name=mRNA_H-paniculata_contig26434.7216.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig26434:485..1355- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCAGGAAAAAGACGGATTCGGATCGCCAGACGCGGTTGTGGCGTTTGT
GTCTAACTGCAAGGTGTCGGGAGCCACGAAACGCACTCAGTACATGTCTG
AGCTGATGAAACACGGCACGGTACATTCCATCGGAAAGTGTTTGCACAAC
AGATTCAGGAAAAAGACGGATTCGGATCGCCAGACGCGGTTGTGGCGTTT
GTGTCTAACTGCAAGGTGTCGGGAGCCACGAAACGCACTCAGTACATGTC
TGAGCTGATGAAACACGGCACGGTACATTCCATCGGAAAGTGTTTGCACA
ACAGAGACGAACCGATACTCGTGGAGGGTGAGGGCACCTCGATTCGACAG
CAGAACAAGATTGAGGTTCTCCGGCGATACAAGTTCTACCTGGCATTTGA
AAATAACAATAGGTACTTATGAAGACGAACCGATACTCGTGGAGGGTGAG
GGCACCTCGATTCGACAGCAGAACAAGATTGAGGTTCTCCGGCGATACAA
GTTCTACCTGGCATTTGAAAATAACAATAGGTACTTATGA
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