mRNA_H-paniculata_contig2641.7213.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2641.7213.1
Unique NamemRNA_H-paniculata_contig2641.7213.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2641.7213.1 vs. uniprot
Match: A0A6H5JTR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTR6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.240e-17
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 QLFIYSPSRRLAAFQSG---------------NSVPRGHVVFVPGLTDGLLALAYLPALAVAMGRLGCSLVQPVLSSSYKG 198
            +LF+YSP +RLAAF+SG                   R H VFVPGLTDGLLAL Y+P LA A+ RLG + VQPVLSSSY+G
Sbjct:   40 ELFVYSPKKRLAAFRSGCHGGGSSSSDRQSRQQRHNRKHAVFVPGLTDGLLALDYVPELAAALDRLGFAFVQPVLSSSYQG 120          
BLAST of mRNA_H-paniculata_contig2641.7213.1 vs. uniprot
Match: A0A1Y1XTH3_9FUNG (DUF1749-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XTH3_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 1.480e-11
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    4 LFIYSPSRRLAAFQSGNSVPRGHVVFVPGLTDGLLALAYLPALAVAMGRLGCSLVQPVLSSSYKG 198
            LF YS + RL  F+SG++   G VVF+ GLTDG  A+ YLP L   + RLG SLVQ +LSSSY G
Sbjct:    7 LFQYSSTSRLVGFESGDASSPGCVVFIAGLTDGFHAVPYLPVLNDTVNRLGYSLVQVLLSSSYHG 71          
BLAST of mRNA_H-paniculata_contig2641.7213.1 vs. uniprot
Match: A0A7S4SG09_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SG09_9DINO)

HSP 1 Score: 67.4 bits (163), Expect = 1.830e-11
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 QLFIYSPSRRLAAFQSGNSVPRGH-VVFVPGLTDGLLALAYLPALAVAMGRLGCSLVQPVLSSSYKG 198
            +LF+Y+    LAAF+ G   P    +V +PGLTDGL+++ YLPALA AM R G  +VQPVLSSSY G
Sbjct:    8 ELFLYNDDIGLAAFEVGGRGPGTRALVCIPGLTDGLMSMRYLPALADAMQREGWRVVQPVLSSSYSG 74          
BLAST of mRNA_H-paniculata_contig2641.7213.1 vs. uniprot
Match: A0A507BYY6_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BYY6_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 7.350e-11
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    1 QLFIYSPSRRLAAFQSGNSVPRGHVVFVPGLTDGLLALAYLPALAVAMGRLGCSLVQPVLSSSY 192
            +LF Y    R  AF+S +S+P    +F+PGLTDGL AL YLP L   +  +G SL+QP+L SSY
Sbjct:    4 KLFTYDSESRYVAFESNSSLPN-KTIFIPGLTDGLNALPYLPLLTQQLASIGYSLIQPILPSSY 66          
BLAST of mRNA_H-paniculata_contig2641.7213.1 vs. uniprot
Match: A0A7S0X3Y9_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X3Y9_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 4.970e-10
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 QLFIYSPSRRLAAFQSG-NSVPRGHVVFVPGLTDGLLALAYLPALAVAMGRLGCSLVQPVLSSSYKG 198
            +L+   PSR L AF SG +  P G VVF+PGL+DG LAL Y+PAL  A    G +L QPVLSSSY G
Sbjct:   32 RLYRTFPSR-LVAFTSGPDPAPAGTVVFIPGLSDGPLALPYVPALGAAGAARGWALCQPVLSSSYLG 97          
BLAST of mRNA_H-paniculata_contig2641.7213.1 vs. uniprot
Match: A0A7I8L864_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L864_SPIIN)

HSP 1 Score: 60.1 bits (144), Expect = 6.260e-9
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    4 LFIYSPSRRLAAFQSGNSVPRGHVVFVPGLTDGLLALAYLPALAVAMGRLGCSLVQPVLSSSYKG 198
            LF Y P     AF++G+   R  V+F+ GLTDGLLA  YL +L+VA+ +   SLVQP+LSSSY G
Sbjct:   55 LFKYGPKAVQVAFKTGDF--RQQVIFIGGLTDGLLATEYLESLSVALEKERWSLVQPLLSSSYTG 117          
BLAST of mRNA_H-paniculata_contig2641.7213.1 vs. uniprot
Match: A0A813JN21_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JN21_POLGL)

HSP 1 Score: 59.3 bits (142), Expect = 1.300e-8
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 QLFIYSPSRRLAAFQ-SGNSVPRGHVVFVPGLTDGLLALAYLPALAVAMGRLG-CSLVQPVLSSSYKG 198
            +LF++     LAAF+  G  +    +V +PGLTDGLL+L YLPALA A+   G   +VQPVLSSSY G
Sbjct:  103 ELFLWDDDLGLAAFEIGGRGLGSRALVCIPGLTDGLLSLRYLPALAEAVASTGGWRVVQPVLSSSYSG 170          
BLAST of mRNA_H-paniculata_contig2641.7213.1 vs. uniprot
Match: UPI0009E2DC82 (UPF0613 protein PB24D3.06c isoform X1 n=2 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E2DC82)

HSP 1 Score: 58.9 bits (141), Expect = 1.640e-8
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    4 LFIYSPSRRLAAFQSGNSVPRGHVVFVPGLTDGLLALAYLPALAVAMGRLGCSLVQPVLSSSYKG 198
            LF Y P     AF++G+      V+F+ GLTDGLLA  YL  L+VA+  L  SLVQP+LSSSY G
Sbjct:   61 LFKYGPKSVQVAFRTGDF--NQQVIFLGGLTDGLLATEYLEPLSVALENLNWSLVQPLLSSSYVG 123          
BLAST of mRNA_H-paniculata_contig2641.7213.1 vs. uniprot
Match: A0A812YZ55_9DINO (Hypothetical protein n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A812YZ55_9DINO)

HSP 1 Score: 58.2 bits (139), Expect = 3.360e-8
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 QLFIYSPSRRLAAFQS--GNSVPRGH--VVFVPGLTDGLLALAYLPALAVAMGRLGCSLVQPVLSSSYKG 198
            ++F+Y      A F++  G ++P+G   VV + GLTDGLL+L YLPALA  + ++G    QPVL SSY+G
Sbjct:    8 EVFLYDEMLGYAGFEARTGQNLPQGSKAVVCIGGLTDGLLSLRYLPALAAELQQVGWRTFQPVLQSSYRG 77          
BLAST of mRNA_H-paniculata_contig2641.7213.1 vs. uniprot
Match: A0A4Y7J0N5_PAPSO (Uncharacterized protein n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7J0N5_PAPSO)

HSP 1 Score: 57.0 bits (136), Expect = 3.610e-8
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    4 LFIYSPSRRLAAFQSGNSVPRGHVVFVPGLTDGLLALAYLPALAVAMGRLGCSLVQPVLSSSYKG 198
            LF Y P     AF++G+   +  V+F+ GLTDGLLA  Y+  L++A+ +   SLVQP+LSSSY G
Sbjct:   58 LFKYGPKSAQVAFKTGDF--KQQVIFIGGLTDGLLATDYVEPLSIALQKEKWSLVQPLLSSSYTG 120          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2641.7213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTR6_9PHAE5.240e-1755.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1XTH3_9FUNG1.480e-1155.38DUF1749-domain-containing protein n=1 Tax=Basidiob... [more]
A0A7S4SG09_9DINO1.830e-1155.22Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A507BYY6_9FUNG7.350e-1150.00Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A7S0X3Y9_9CHLO4.970e-1056.72Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A7I8L864_SPIIN6.260e-952.31Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A813JN21_POLGL1.300e-851.47Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
UPI0009E2DC821.640e-852.31UPF0613 protein PB24D3.06c isoform X1 n=2 Tax=Phal... [more]
A0A812YZ55_9DINO3.360e-845.71Hypothetical protein n=4 Tax=Symbiodinium TaxID=29... [more]
A0A4Y7J0N5_PAPSO3.610e-847.69Uncharacterized protein n=1 Tax=Papaver somniferum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2641contigH-paniculata_contig2641:20116..20358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score60.8
Seed ortholog evalue2.8e-07
Seed eggNOG ortholog5297.GMQ_16481T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1749)
EggNOG OGs39XSM@33154,3P03V@4751,3V24T@5204,KOG4840@1,KOG4840@2759
COG Functional cat.S
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Exons2
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929790.8724318-CDS-H-paniculata_contig2641:20115..201661622929790.8724318-CDS-H-paniculata_contig2641:20115..20166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2641 20116..20166 +
1691481012.1633492-CDS-H-paniculata_contig2641:20115..201661691481012.1633492-CDS-H-paniculata_contig2641:20115..20166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2641 20116..20166 +
1622929790.903036-CDS-H-paniculata_contig2641:20199..203581622929790.903036-CDS-H-paniculata_contig2641:20199..20358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2641 20200..20358 +
1691481012.1786242-CDS-H-paniculata_contig2641:20199..203581691481012.1786242-CDS-H-paniculata_contig2641:20199..20358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2641 20200..20358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2641.7213.1prot_H-paniculata_contig2641.7213.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2641 20116..20358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2641.7213.1

>prot_H-paniculata_contig2641.7213.1 ID=prot_H-paniculata_contig2641.7213.1|Name=mRNA_H-paniculata_contig2641.7213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
QLFIYSPSRRLAAFQSGNSVPRGHVVFVPGLTDGLLALAYLPALAVAMGR
LGCSLVQPVLSSSYKGTEKV
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mRNA from alignment at H-paniculata_contig2641:20116..20358+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2641.7213.1 ID=mRNA_H-paniculata_contig2641.7213.1|Name=mRNA_H-paniculata_contig2641.7213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at H-paniculata_contig2641:20116..20358+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTTGTTTATCTACTCCCCAAGTAGGCGCCTAGCGGCTTTTCAAAGCGG CGTTAGGACTTCTTCCTCCCCCGACCAAGAACAGAATTCTGTGCCTCGGG GCCATGTAGTGTTCGTACCGGGGTTAACTGATGGTCTACTCGCGCTAGCC TACTTGCCTGCTTTGGCGGTGGCCATGGGTCGACTGGGCTGTTCGTTGGT TCAACCCGTTTTGTCGTCGTCCTACAAAGGTACTGAAAAAGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig2641:20116..20358+

>mRNA_H-paniculata_contig2641.7213.1 ID=mRNA_H-paniculata_contig2641.7213.1|Name=mRNA_H-paniculata_contig2641.7213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig2641:20116..20358+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTTGTTTATCTACTCCCCAAGTAGGCGCCTAGCGGCTTTTCAAAGCGG
CCAGTTGTTTATCTACTCCCCAAGTAGGCGCCTAGCGGCTTTTCAAAGCG
GCAATTCTGTGCCTCGGGGCCATGTAGTGTTCGTACCGGGGTTAACTGAT
GGTCTACTCGCGCTAGCCTACTTGCCTGCTTTGGCGGTGGCCATGGGTCG
ACTGGGCTGTTCGTTGGTTCAACCCGTTTTGTCGTCGTCCTACAAAGGTA
CTGAAAAAGTAAATTCTGTGCCTCGGGGCCATGTAGTGTTCGTACCGGGG
TTAACTGATGGTCTACTCGCGCTAGCCTACTTGCCTGCTTTGGCGGTGGC
CATGGGTCGACTGGGCTGTTCGTTGGTTCAACCCGTTTTGTCGTCGTCCT
ACAAAGGTACTGAAAAAGTA
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