mRNA_H-paniculata_contig2641.7212.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2641.7212.1
Unique NamemRNA_H-paniculata_contig2641.7212.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2641.7212.1 vs. uniprot
Match: D8LGT5_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGT5_ECTSI)

HSP 1 Score: 358 bits (918), Expect = 4.530e-117
Identity = 175/223 (78.48%), Postives = 197/223 (88.34%), Query Frame = 3 
Query:  285 QEDGPLTRRQCLASAISSMGLLAAAAAAVARDAPKVPPRARLPEGDTQGSDYMELGGGSKSFAKPRIRYSDFETMKNGLQFKDAKVGTGNPATVGDRVVMDWEGYTIGYNGGVFETTKGPKGGAYDEDKTSTRFVLGKGTIIPGLEQGILGMKPGGVRQIVVPPELGYPESDRKHEVIGPKPSTFSGYRTLDFVLSNPGYIDKTLLFTIKLVRVDKPGERASR 953
            Q DGP++RRQCLASA+S+ GL+A AAAA AR+APK PPRARLPEGDTQGSDYMELGGGSKSFAKPRIRY DF+ +  GLQ+KDAKVG G   T GDRVV DW+GYTIGYNG +FET KGPKGG +D+DK S+RFV+G GTIIPGLE+GI GM+ GGVRQIVVPPELGYPE DRKH+ +GPKPSTFSG R LDFVLSNPGYIDKTLLFT+K+VRVDKPG+RASR
Sbjct:   58 QGDGPVSRRQCLASAMSAAGLVAGAAAAGAREAPKPPPRARLPEGDTQGSDYMELGGGSKSFAKPRIRYPDFKDLDKGLQYKDAKVGAGRAVTDGDRVVFDWDGYTIGYNGNLFETNKGPKGGDFDKDKDSSRFVVGSGTIIPGLEEGIKGMQAGGVRQIVVPPELGYPEGDRKHDRVGPKPSTFSGTRALDFVLSNPGYIDKTLLFTVKVVRVDKPGDRASR 280
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BLAST of mRNA_H-paniculata_contig2641.7212.1 vs. uniprot
Match: A0A7S2WEE0_9STRA (Peptidylprolyl isomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEE0_9STRA)

HSP 1 Score: 209 bits (532), Expect = 1.010e-60
Identity = 99/168 (58.93%), Postives = 123/168 (73.21%), Query Frame = 3 
Query:  453 GGSKSFAKPRIRYSDFETMKNGLQFKDAKVGTGNPATVGDRVVMDWEGYTIGYNGGVFETTKGPKGGAYDEDKTSTRFVLGKGTIIPGLEQGILGMKPGGVRQIVVPPELGYPESDRKHEVIGPKPSTFSGYRTLDFVLSNPGYIDKTLLFTIKLVRVDKPGERASRG 956
            G  +++ KPRI Y DF   K+GLQ+KD + G+G+ A VGDRVV+DWEGYTIGY G  FE     KGGA+ EDK   RFV+GK ++IP LE+ + GM+PG +RQI++PPELGYP SD  H  +GPKP+TFSG R LDFVL N G IDKTLL  +++ RVDKPGER   G
Sbjct:   33 GQVQAYGKPRITYPDFTLTKSGLQYKDVRAGSGSAAAVGDRVVIDWEGYTIGYYGRPFEAKGKVKGGAFSEDKDYYRFVVGKRSVIPALEEAVQGMQPGAIRQIIIPPELGYPPSDPSHSQVGPKPTTFSGERALDFVLENKGLIDKTLLINLEVKRVDKPGERGFSG 200
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BLAST of mRNA_H-paniculata_contig2641.7212.1 vs. uniprot
Match: A0A835ZI71_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI71_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.390e-57
Identity = 96/159 (60.38%), Postives = 115/159 (72.33%), Query Frame = 3 
Query:  468 FAKPRIRYSDFETMKNGLQFKDAKVGTGNPATVGDRVVMDWEGYTIGYNGGVFETTKGPKGGAYDEDKTSTRFVLGKGTIIPGLEQGILGMKPGGVRQIVVPPELGYPESDRKHEVIGPKPSTFSGYRTLDFVLSNPGYIDKTLLFTIKLVRVDKPGER 944
            + KPR +Y DF  + +GLQ+KD KVG+G   + GDRVV+DWEGYTIGY G  F+     KGGA+  D    RF LG GT+IP L + +  MK GGVRQI+VP E+GYPESDR H  +GPKPSTFSG R LDFVL N G IDKTLLF ++L RVDKPG+R
Sbjct:    9 YGKPRAKYPDFVELPSGLQYKDIKVGSGEKPSTGDRVVIDWEGYTIGYYGRPFQLKNSVKGGAFAADTDFLRFTLGDGTVIPALNEALATMKEGGVRQIIVPNEIGYPESDRGHTRVGPKPSTFSGNRALDFVLQNKGIIDKTLLFNVELKRVDKPGQR 167
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BLAST of mRNA_H-paniculata_contig2641.7212.1 vs. uniprot
Match: A0A0G4END1_VITBC (Peptidylprolyl isomerase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4END1_VITBC)

HSP 1 Score: 194 bits (492), Expect = 3.930e-55
Identity = 101/180 (56.11%), Postives = 125/180 (69.44%), Query Frame = 3 
Query:  453 GGSKSFAKPRIRYSDFETMKNGLQFKDAKVGTGNPATVGDRVVMDWEGYTIGYNGGVFETTKGP-KGGAYDE----DKTSTRFVLGKGTIIPGLEQGILGMKPGGVRQIVVPPELGYP-ESDRKHEVIGPKPSTFSGYRTLDFVLSNPGYIDKTLLFTIKLVRVDKPGERASRGIGK*SF 974
            GGS+ F K R +Y DFE   +GLQFKD K G G P   GDRVV+DWEGYTIGY G +FE   G  KG A+ +    D    RFV+G G++IP +++ +  MKPGG+RQIVVPPE+GYP E D  HE++GPKPSTFSG R+L+FVL N G +DKTLLF +KL+RVD     ASR +   SF
Sbjct:    7 GGSQRFGKTRAKYPDFEQTASGLQFKDVKEGEGTPPAKGDRVVLDWEGYTIGYYGRIFEKKSGVVKGSAFADNVYNDPKLMRFVVGSGSVIPAIDEAVQSMKPGGIRQIVVPPEIGYPMEKDPNHEMVGPKPSTFSGQRSLNFVLENQGLVDKTLLFNLKLLRVD-----ASRKLAGLSF 181
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BLAST of mRNA_H-paniculata_contig2641.7212.1 vs. uniprot
Match: L1J2M3_GUITC (Peptidylprolyl isomerase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J2M3_GUITC)

HSP 1 Score: 192 bits (487), Expect = 1.850e-54
Identity = 91/157 (57.96%), Postives = 112/157 (71.34%), Query Frame = 3 
Query:  462 KSFAKPRIRYSDFETMKNGLQFKDAKVGTGNPATVGDRVVMDWEGYTIGYNGGVFETTKGPKGGAYDEDKTSTRFVLGKGTIIPGLEQGILGMKPGGVRQIVVPPELGYPESDRKHEVIGPKPSTFSGYRTLDFVLSNPGYIDKTLLFTIKLVRVDK 932
            K + K +++Y DF    +GLQ+KD KVG G     GDRVV DWEGYTIGY G +F+   G KGGA+ ++    R VLG  T+IPGLE+G+ GMK GG+RQ+VV PELGYPE D  H  +GPKPSTF G R L+FVL N G IDKTLLF IK++R+DK
Sbjct:    7 KDYGKTKMKYPDFVATPSGLQYKDVKVGNGESPEDGDRVVFDWEGYTIGYYGRIFQAKNGVKGGAFADETDFQRCVLGSHTVIPGLEEGLKGMKVGGIRQLVVTPELGYPEDDPSHTRVGPKPSTFDGQRALNFVLFNKGLIDKTLLFNIKVIRIDK 163
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BLAST of mRNA_H-paniculata_contig2641.7212.1 vs. uniprot
Match: A0A6U4NEY8_HEMAN (Peptidylprolyl isomerase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4NEY8_HEMAN)

HSP 1 Score: 192 bits (487), Expect = 6.080e-53
Identity = 95/158 (60.13%), Postives = 116/158 (73.42%), Query Frame = 3 
Query:  474 KPRIRYSDFETMKNGLQFKDAKVGTGNPATVGDRVVMDWEGYTIGYNGGVFETTKGPKGGAYDEDKTSTRFVLGKGTIIPGLEQGILGMKPGGVRQIVVPP-ELGYPESDRKHEVIGPKPSTFSGYRTLDFVLSNPGYIDKTLLFTIKLVRVDKPGER 944
            K   RY DF +  +GLQFKDAK GTG+  + GDRVV+DWEGYTIGY G +F+      GGA+ +D    RFVLG G+++PGL++GI GMKPGGVRQIVVPP EL YP  D  H+ +GP+PSTF G R L+FVL N G IDKTLLF +KL+RVDK  E+
Sbjct:  126 KTVARYPDFTSTPSGLQFKDAKQGTGSSPSDGDRVVIDWEGYTIGYYGRIFQKKNSVVGGAFADDPGYYRFVLGSGSLLPGLDEGIRGMKPGGVRQIVVPPGELNYPADDSGHKRVGPRPSTFDGMRALNFVLENKGLIDKTLLFNVKLIRVDKKNEQ 283
[Close]
BLAST of mRNA_H-paniculata_contig2641.7212.1 vs. uniprot
Match: M1VHD5_CYAM1 (Peptidylprolyl isomerase n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VHD5_CYAM1)

HSP 1 Score: 191 bits (484), Expect = 1.310e-52
Identity = 89/171 (52.05%), Postives = 124/171 (72.51%), Query Frame = 3 
Query:  462 KSFAKPRIRYSDFETMKNGLQFKDAKVG-TGNPATVGDRVVMDWEGYTIGYNGGVFETTKGPKGGAYDEDKTSTRFVLGKGTIIPGLEQGILGMKPGGVRQIVVPPELGYP--ESDRKHEVIGPKPSTFSGYRTLDFVLSNPGYIDKTLLFTIKLVRVDKPGERASRGIGK 965
            K + KPR+RYSDF T+ +G+Q++D ++G T      GDRVV++W GYTIGY G +FE     +GGA+ +D+  +R+VLG+G ++P LE+ +L M PGGVRQ++VPPE GYP   SD  H+ +GPKP TFSG R L+FVL N G +DKTLLF I+L+R+D+PGE     +G+
Sbjct:  111 KDYGKPRMRYSDFVTLPDGVQYRDVRIGDTEITPRPGDRVVLNWSGYTIGYYGRIFEAKNRVQGGAFGDDREYSRYVLGRGELVPALEETLLTMHPGGVRQVIVPPERGYPLDGSDWNHDRVGPKPRTFSGMRALNFVLENKGLVDKTLLFNIELIRIDRPGENGFETVGR 281
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BLAST of mRNA_H-paniculata_contig2641.7212.1 vs. uniprot
Match: A0A835XRC4_9CHLO (Peptidylprolyl isomerase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XRC4_9CHLO)

HSP 1 Score: 188 bits (477), Expect = 3.680e-52
Identity = 110/235 (46.81%), Postives = 143/235 (60.85%), Query Frame = 3 
Query:  258 ETTTRAEGSQEDGPLTRRQCLASA---------ISSMGLLAAAAAAV-ARDAPKVPPRARLPEGDTQGSDYMELGGGSKSFAKPRIRYSDFETMKNGLQFKDAKVGTGNPATVGDRVVMDWEGYTIGYNGGVFETTKGPKGGAYDEDKTSTRFVLGKGTIIPGLEQGILGMKPGGVRQIVVPPELGYPESDRKHEVIGPKPSTFSGYRTLDFVLSNPGYIDKTLLFTIKLVRVDK 932
            +T   A GS    P  R  C+A+A         ++   LLA AA  + A     +P  +R  EG ++      L G  K + KPR+RY D+   ++GLQ++D K G G     GD  ++DW+GYTIGY G  FE    PKG ++  DK   RFVLG+G +IPG E+ + GMKPGG+R+IVVP ELGYP  D +   +GPKPSTF+G R LDFVLSN G IDKTLLF I+LVRVD+
Sbjct:    8 QTRRGAFGSSSARPAARMHCVAAASPREEPSHTMARRSLLAGAALLLPAAAGAGLPAPSRATEGISKYEPMDALKG--KDYGKPRMRYKDYTETESGLQYQDLKAGDGESPQPGDLCIVDWDGYTIGYYGRPFEARNKPKGSSFAGDKDFYRFVLGEGKVIPGFEEAVSGMKPGGIRRIVVPVELGYPAEDWRR--LGPKPSTFAGDRALDFVLSNRGMIDKTLLFDIELVRVDR 238
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BLAST of mRNA_H-paniculata_contig2641.7212.1 vs. uniprot
Match: A0A7J7IDC6_9RHOD (Peptidylprolyl isomerase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IDC6_9RHOD)

HSP 1 Score: 189 bits (481), Expect = 3.780e-52
Identity = 87/163 (53.37%), Postives = 120/163 (73.62%), Query Frame = 3 
Query:  462 KSFAKPRIRYSDFETMKNGLQFKDAKVGTG-NPATVGDRVVMDWEGYTIGYNGGVFETTKGPKGGAYDEDKTSTRFVLGKGTIIPGLEQGILGMKPGGVRQIVVPPELGYP--ESDRKHEVIGPKPSTFSGYRTLDFVLSNPGYIDKTLLFTIKLVRVDKPGE 941
            K + KPR+RYSDF T+ +G+Q++D +VG   N    GDRVV+ W GYTIGY G +FE     +GGA+ +D+  +R+VLG+G +IP LE+ +L M PGG+RQ++VPPE GYP   +D  H+ +GPKP TFSG R L+FVL N G +DKTLLF ++L+R+D+PGE
Sbjct:  114 KDYGKPRMRYSDFATLPSGVQYRDVRVGDSLNTPRTGDRVVISWSGYTIGYYGRIFEAKNRVQGGAFGDDREYSRYVLGRGELIPALEEALLTMHPGGIRQVIVPPEHGYPLDGTDWSHDRVGPKPRTFSGMRALNFVLENKGLVDKTLLFNVELIRIDRPGE 276
[Close]
BLAST of mRNA_H-paniculata_contig2641.7212.1 vs. uniprot
Match: A0A5J4Z9W9_PORPP (Peptidylprolyl isomerase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z9W9_PORPP)

HSP 1 Score: 188 bits (478), Expect = 9.150e-52
Identity = 93/172 (54.07%), Postives = 119/172 (69.19%), Query Frame = 3 
Query:  420 DTQGSDYMELGG-GSKSFAKPRIRYSDFETMKNGLQFKDAKVGTGNPATVGDRVVMDWEGYTIGYNGGVFETTKGPKGGAYDE-DKTSTRFVLGKGTIIPGLEQGILGMKPGGVRQIVVPPELGYPESDRKHEVIGPKPSTFSGYRTLDFVLSNPGYIDKTLLFTIKLVRVD 929
            ++   +++++ G   K + K  + YSDF    +GLQ+KD +VGTG     GDR V+ WEGYTIGY G +FE     +GGA+D  DK   RFVLG GT IP L++ +  M+ GGVRQ++VPPELGYP SD +HE +GP+PSTFSG R LDFVL N G IDKTLL  I+LVRVD
Sbjct:  105 ESMAGEFVKMEGLQGKDYGKQAMTYSDFVRTDSGLQYKDVRVGTGKQPEEGDRAVLKWEGYTIGYLGRIFEAKGKAQGGAFDSADKDYFRFVLGSGTAIPALDEAVRSMREGGVRQVIVPPELGYPASDPRHEKVGPRPSTFSGQRALDFVLENRGLIDKTLLINIQLVRVD 276
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2641.7212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGT5_ECTSI4.530e-11778.48Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2WEE0_9STRA1.010e-6058.93Peptidylprolyl isomerase n=1 Tax=Rhizochromulina m... [more]
A0A835ZI71_9STRA1.390e-5760.38Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A0G4END1_VITBC3.930e-5556.11Peptidylprolyl isomerase n=2 Tax=Vitrella brassica... [more]
L1J2M3_GUITC1.850e-5457.96Peptidylprolyl isomerase n=1 Tax=Guillardia theta ... [more]
A0A6U4NEY8_HEMAN6.080e-5360.13Peptidylprolyl isomerase n=1 Tax=Hemiselmis anders... [more]
M1VHD5_CYAM11.310e-5252.05Peptidylprolyl isomerase n=1 Tax=Cyanidioschyzon m... [more]
A0A835XRC4_9CHLO3.680e-5246.81Peptidylprolyl isomerase n=1 Tax=Edaphochlamys deb... [more]
A0A7J7IDC6_9RHOD3.780e-5253.37Peptidylprolyl isomerase n=1 Tax=Cyanidiococcus ya... [more]
A0A5J4Z9W9_PORPP9.150e-5254.07Peptidylprolyl isomerase n=1 Tax=Porphyridium purp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2641contigH-paniculata_contig2641:2500..7846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score359.8
Seed ortholog evalue1.3e-96
Seed eggNOG ortholog2880.D8LGT5
Hectar predicted targeting categorychloroplast
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0016020,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0036211,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1773
Cds size909
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929790.7207108-UTR-H-paniculata_contig2641:2499..25581622929790.7207108-UTR-H-paniculata_contig2641:2499..2558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2641 2500..2558 +
1691481012.0972292-UTR-H-paniculata_contig2641:2499..25581691481012.0972292-UTR-H-paniculata_contig2641:2499..2558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2641 2500..2558 +
1622929790.816573-UTR-H-paniculata_contig2641:7041..78461622929790.816573-UTR-H-paniculata_contig2641:7041..7846Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2641 7042..7846 +
1691481012.1531112-UTR-H-paniculata_contig2641:7041..78461691481012.1531112-UTR-H-paniculata_contig2641:7041..7846Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2641 7042..7846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929790.7359705-CDS-H-paniculata_contig2641:2558..27771622929790.7359705-CDS-H-paniculata_contig2641:2558..2777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2641 2559..2777 +
1691481012.1079483-CDS-H-paniculata_contig2641:2558..27771691481012.1079483-CDS-H-paniculata_contig2641:2558..2777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2641 2559..2777 +
1622929790.7537801-CDS-H-paniculata_contig2641:3788..40031622929790.7537801-CDS-H-paniculata_contig2641:3788..4003Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2641 3789..4003 +
1691481012.1168604-CDS-H-paniculata_contig2641:3788..40031691481012.1168604-CDS-H-paniculata_contig2641:3788..4003Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2641 3789..4003 +
1622929790.7702506-CDS-H-paniculata_contig2641:4427..45401622929790.7702506-CDS-H-paniculata_contig2641:4427..4540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2641 4428..4540 +
1691481012.1275275-CDS-H-paniculata_contig2641:4427..45401691481012.1275275-CDS-H-paniculata_contig2641:4427..4540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2641 4428..4540 +
1622929790.7832484-CDS-H-paniculata_contig2641:5268..54411622929790.7832484-CDS-H-paniculata_contig2641:5268..5441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2641 5269..5441 +
1691481012.1354682-CDS-H-paniculata_contig2641:5268..54411691481012.1354682-CDS-H-paniculata_contig2641:5268..5441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2641 5269..5441 +
1622929790.795-CDS-H-paniculata_contig2641:6852..70411622929790.795-CDS-H-paniculata_contig2641:6852..7041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2641 6853..7041 +
1691481012.143884-CDS-H-paniculata_contig2641:6852..70411691481012.143884-CDS-H-paniculata_contig2641:6852..7041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2641 6853..7041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2641.7212.1prot_H-paniculata_contig2641.7212.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2641 2559..7041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2641.7212.1

>prot_H-paniculata_contig2641.7212.1 ID=prot_H-paniculata_contig2641.7212.1|Name=mRNA_H-paniculata_contig2641.7212.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=303bp
MACYRLAMGLSVMAFASVSSAAHASLVPSFIASSSVPLLQPLAQPRANQA
VRRLARPRHMTAAHDGETTTRAEGSQEDGPLTRRQCLASAISSMGLLAAA
AAAVARDAPKVPPRARLPEGDTQGSDYMELGGGSKSFAKPRIRYSDFETM
KNGLQFKDAKVGTGNPATVGDRVVMDWEGYTIGYNGGVFETTKGPKGGAY
DEDKTSTRFVLGKGTIIPGLEQGILGMKPGGVRQIVVPPELGYPESDRKH
EVIGPKPSTFSGYRTLDFVLSNPGYIDKTLLFTIKLVRVDKPGERASRGI
GK*
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mRNA from alignment at H-paniculata_contig2641:2500..7846+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2641.7212.1 ID=mRNA_H-paniculata_contig2641.7212.1|Name=mRNA_H-paniculata_contig2641.7212.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5347bp|location=Sequence derived from alignment at H-paniculata_contig2641:2500..7846+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAGATCGGTAGGGATCCATGCTCATCTCGTTAATGCATACGTTCGGTT
AGGGCGGGAATGGCTTGCTACAGATTAGCTATGGGCCTTTCGGTGATGGC
CTTTGCCAGCGTTTCTTCCGCTGCTCACGCGTCGTTGGTGCCGTCGTTTA
TCGCGTCGTCGTCGGTACCATTATTGCAACCGCTCGCCCAACCAAGAGCG
AATCAGGCTGTGCGCAGATTGGCGAGGCCTAGGCACATGACTGCTGCCCA
CGATGGGGAGACAACAACACGAGCAGAGGTTCGTTTTAGCCACTAGTATT
ACGATGATATACTAATCATACGATGTTTGAGATTTGCTGTGTGTCACGCT
TGATGACAGTTGGTATGGGACGCAGCTAATAAAAGTATTTTGCATTCATG
TTGCGAAGTTCAAGAACCTTCGATGTTGCACTTCACCTCAAATTTACTGA
CTGAGACTCATGTGCGTCCGGTATTCAGAGAGGCGAGATGATGTTTTGTG
CGTGCCTGATCATAGTATTGCGTTCGCATTTTGCATAGATATGGCTGGTT
TACCAGCAATGGTGTTGAAACCCATGGACGGAACGTCAAAAATTGTTGTG
TTGGACTTGCTCCAAGGTTGTTCCATGGTACGATGTGTTGTTACAGTCAG
TTCATGTGTAAACATGACTCCAAATTCGACACGACGTATCGATATTGATC
CCAAGGACCATAAACGGTTTCATATCGTGCGCTGTTCGTCGAAGATGTGA
GCTGTGTGCAAAAATGGCGTTACAAAGGGAGAAGCCCTCTCACTTGTTTT
CGCTTATTCGTGAAGAGTGGTACTTTAAGTCTGTACTGTGGTCAGACAGA
TGGTAAGTTTAGGGTTTACGACGCTCTTTTCCGCTCTAATGCATAGTCAA
ATGCAATACAAGTACCTGACTAACTGCTTTTTGTTGATCCAACAACTTCC
TCACTAAGGATTGCGTTCGACATTATGGCAACGAGTGCAGACACCAAGTC
ACTGGAAACCCTTTTTGCTGAGATACTCAACATCGATATTTGATGCCGGA
TTCGTGTGGGATATTTTCTTCATGAGCGCTCAGTCGCATGCAACAAAAAA
GCTAAGATTTTAGATATTAATAATAGATACTTGGAAGCTACCCTGAAGTT
ACGTACACATACCTACGATTAATACCCTTGCAACTCCGCACCTTCGTCTA
ACTTACCCTGCAAGTTTCACGTGCGATAAACCGGATAGAAATCGTCATTC
CCTCCGCTGCGAAAACGCCTCCTTCTCGCCCCCGCTCAGGGCTCCCAAGA
GGACGGGCCGCTAACGCGACGGCAGTGCTTAGCTTCGGCGATCTCGAGCA
TGGGGCTCCTAGCGGCGGCGGCAGCGGCTGTGGCGCGCGACGCTCCTAAG
GTGCCGCCGCGAGCTCGGCTACCTGAAGGAGACACTCAAGGAAGCGACTA
CATGGAGCTAGGGGGAGGGTCGAAAAGCTTTGCCAAACCGAGGATCCGTT
ACTCGTGAGTTGGCTGCTCTCGTTCACAACAGGTGTCGTTGTATGGTTTG
TCTCGGTTGCCAATTAGTTGGACGGATGGGTGGGTAGGTGGGCAAGTGGG
TGGGGTGAGGTGATCGGACGGTCGGTTTATTCGGCGGTTTATCGTTTGGA
TATCGCAGTCGATATAATAGATCATATGCAGCTTCTTACGAGATATGGGT
AAGCCGTGATGGTTGCAGTATTTAGGCGAGGGGCACGATAACCGGTGCCC
GCTGTAGTATTCAAGTTATCTCGAGGTCTGCAACAAGCAACACGCTTTGG
GGATACACGCGATCGCCTCGATTAGGATGGTCATTATCCGCGCAGTCGGT
ATCGTCTCGATGCCCGAGGAGAGCACTTGCCTATAACATTGCACGCACGT
AATTGCACAACCATGCTCGCCCCAACAGAGACTTCGAGACCATGAAAAAC
GGGCTACAGTTCAAAGATGCCAAAGTGGGTACCGGGAACCCGGCTACTGT
GGGCGACAGAGTGGTGATGGATTGGGAGGGATACACAATCGGTGAGCCTA
CTAATCTGCCAAATAATAAATACAGTACAGTGATGGTCTTGGGATTTTTC
TCCCCCGATGATAAGAAATTTGTGTGTTACCCCTCTTTTACTACACCTAC
ATATTTCACAGACTACTACAGTAGCGCGTCGTGTCTACTTTTTGCCTTAT
CCTCTACGTATATTGCTGTTCGCCGACGCCTCTACCGTAGCGGTACAGTG
TCACGCATCACACAGTCCATATGCATTTATTCGTCCCGTTGATACCATCT
CGCGGATTTCAGTCCTTGTGGTTGAAAAATACCCACTGTAAAGAAATACC
TTTTTTCCCGGACGCACGCATGGGAAGTATCGACCGTCGACCCTAATAGG
CATGGTAAAAGGTACACTCGAGGAGCCGGGGGAAGGGGGAGGGGGAAGGG
AGCAGTAGTACATCATAAGGAGGGGCATACATGCTTGTGTACGCGACAGC
TTGGGACGTGTTCCTTTGTCATTCAATAAAGTGGGTATCTGCAGCATAAA
TCAAGTAGAGGGAAGATATAAATACTGCCAGGGATCGGCCCGAGTGTACA
TAGAGTAGCGTAAACGCCACCAGATTTAACCATCGCCCAGCTCACCTTCA
CCCTCATGGTGGTTGATACTTGATAGCCTGAAAGCTTGATTTTGAGAAGG
TGTACTTATCGCATCGATTACTGATTGCCCATCGAATCGCATAAAACTGG
ATCGATTCATGTAATACAGGTTACAATGGCGGCGTGTTCGAAACGACTAA
GGGACCTAAGGGTGGGGCATACGACGAGGACAAGACGTCTACACGTTTCG
TGCTCGGAAAGGGCACGATCATTCCCGGCTTGGAGCAAGGGATCCTGGGC
ATGAAGCCAGGGGGAGTGCGACAGATCGTGGTACCCCCCGAGGTACGGTA
CTACTTTTCTCGCTAGATTGTAATATCACCTTTGCCTGTGGAAGTAAAGT
CCTTGATAGGGTTGGCACACCAAATATCGAATGAGGTGTAGACGACATCC
GGGAAAGTTTCTCCGGATGTTCTGATCTGGAACAATGTGACGCGTACCCA
ACGGGCGTTTTATTCGGCCACATCGCCAATGGCTACGGTGTCAGCTGTTT
CTTCGAACGCACACCACGCCTGGGAATTAGGCTCAGACTTCGGGTTTGGG
GTAAAGTTGGGTGCACTCGAGTCCGCGCGGCATGGAGCGTGAGCCATCAA
CATAAATTTATCAGAAAAATCTCTCGGCCAAACTCGGTAAACAGACTCGA
CTTTCGTGGCGAATGAGTTGTCCCACATTGTGTCGCAAGTTGCTGCATGA
CCACAAGTACGGGCTAGCCGCAGCGAGGAATTGGTGATGCGCCATTGCCA
ATGTGCGTATTTAGGCTGGCTCGAGCTGGACTAATTTAGAGGCTTGTTGT
GTGTCTCGCTTTCCGAAGATTATTTGTTTGGCTGTTTTTTAGCAGGAGGA
TTTTTTGGATCCCCGCCGCGAAAGAAACGACCAGCGCCTAGTTTAATGGA
CTTGTGGACGCTACGCCATGTTACGGTATTCTCATCGCACACTTTCTTTT
TCAACGTTTTATGATCTATATCACCATCTCTTTCCGGCTAGTTCACACTT
GATTTCTTTCCCGTCGTCTGGTTTTCGCCGAACCCTGCCGCTCTTGGTCA
AATATTTTTCGATACACGTGAGCATCAACACCAGGATGAACCCCAAATAC
ACAAATTAGCTGACTAAGCCAGTACCAGGTACATGTTTAGCCGACGTAGT
ATGTGCCAGTTTATAAATTTGCTCATCATTTTGTTAGACTTCATCTGAAT
CATATCCACTTGTATCTATTACCTGGTGCACGGGAAAACCTCCCACCCGT
ACACCCCCCAACACGCACATTTCCTCGAGGCATGCGTACCCCCGCCCGTA
GTTCGGTCAGTTCGGTCAGTTTGGTAGTTTGTGGATAATAGCTAAGTAGT
CCAGCAGTTTGAAGATGCTGAGCATTCCTCCATTTTATGTCAAGGTTATT
ATTGTCATGTTTTCTATAATAGTTCAACTGTCTCCACTTTTGACCCTCTT
TTTCTGTACGATCCTCCTTCCAAACCGTGTACCCCCCTCCCCGCCCCGTC
CTTTCGCTAATGTGGTTAATGGATGTGTTCTGCCACAGCACACTACGTCT
CTAATCCCTCTTCTGCTGTAGAATCTGAACCACTATTCCTAGACAATATG
AATTTTGTGCTTTAGCGCCCGTGCCCCAACACCCCGTCCCGGCCCCACGG
TGCCTGTTTGCGACGCACCACCGTAAACAACCTGCGTCTTGTTTTTCCAT
CAGCTGGGATACCCGGAGAGTGACCGCAAGCACGAAGTCATCGGTCCCAA
GCCTTCTACCTTCTCCGGCTACCGAACTCTAGACTTCGTGCTCAGCAACC
CGGGATACATTGATAAGACGCTTCTTTTTACGATTAAGCTCGTCCGTGTC
GACAAGCCCGGGGAACGAGCTTCGAGGGGAATCGGGAAGTAGTCGTTCTC
CCTCATCGACATATGGAGGACTAATAGGGCGCACGGGGGGTACCAATGTT
TTTCTTGCCTCAACTGCTTGGTACATGACCACGCATCTTCGAGAGGGCAG
AGCAGCGGGAGGTGGTGGCGGGCGTTTTGGGTAGTGGGCTGGTTGCGGAG
GATTTGTATCGAGCCGTTGGTACACAATATTTATCCGTGTTCGCTTCTTA
TAGCAGCGAAACAAAAGGTGGAGAGAGTTCTGATAGATAGACGGGACAAA
TGTCAACGCCACATGTACTGTGGGGTGCATTTGGTAGTTTTTAGAGTCTT
TTGCACGAATACATTGGAGAGCGGCCGCGTGCAAGCTCGGTTTTAGATAC
GGGGCTTGTGCGACATAGCACGCTGGCGCTGAAAACAGTTGTGCTGGAGG
GTATCATGCTGTTGTAATGGTGTGCTCGTAAGCTTTGTACGCTGTATGGT
GGGTCACTAGAGCTAGGGTTGTACCCCTTGCGAAGCACATGTATGTGTCA
GAACACATGCTTGTTCGATTATCAAGGGTTACGTAGTGGCTTATGCGTCT
CATGACCGGATCTGTGCCAGACTTGATAATGCAGCTTTACTTCGAATTGG
AGGCGAGTACTGTGGGCTCAGGCAGCCAATGATGAGTGATACGCGCTGCT
GTAGAGGACACAAAAGGAATTTCACTGCACTTACCATGGTGATGGTATTT
GCACATGACAGACGTTTTCATTCCAACGACCAAATGCAAGTGAGCCTGGT
ACCTTCAATCTCTGCGGCATATAACCAGGTTGGTAGTGGTGGTTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig2641:2500..7846+

>mRNA_H-paniculata_contig2641.7212.1 ID=mRNA_H-paniculata_contig2641.7212.1|Name=mRNA_H-paniculata_contig2641.7212.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1818bp|location=Sequence derived from alignment at H-paniculata_contig2641:2500..7846+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTGCTACAGATTAGCTATGGGCCTTTCGGTGATGGCCTTTGCCAG
CGTTTCTTCCGCTGCTCACGCGTCGTTGGTGCCGTCGTTTATCGCGTCGT
CGTCGGTACCATTATTGCAACCGCTCGCCCAACCAAGAGCGAATCAGGCT
GTGCGCAGATTGGCGAGGCCTAGGCACATGACTGCTGCCCACGATGGGGA
GACAACAACACGAGCAGAGATGGCTTGCTACAGATTAGCTATGGGCCTTT
CGGTGATGGCCTTTGCCAGCGTTTCTTCCGCTGCTCACGCGTCGTTGGTG
CCGTCGTTTATCGCGTCGTCGTCGGTACCATTATTGCAACCGCTCGCCCA
ACCAAGAGCGAATCAGGCTGTGCGCAGATTGGCGAGGCCTAGGCACATGA
CTGCTGCCCACGATGGGGAGACAACAACACGAGCAGAGGGCTCCCAAGAG
GACGGGCCGCTAACGCGACGGCAGTGCTTAGCTTCGGCGATCTCGAGCAT
GGGGCTCCTAGCGGCGGCGGCAGCGGCTGTGGCGCGCGACGCTCCTAAGG
TGCCGCCGCGAGCTCGGCTACCTGAAGGAGACACTCAAGGAAGCGACTAC
ATGGAGCTAGGGGGAGGGTCGAAAAGCTTTGCCAAACCGAGGATCCGTTA
CTCGGCTCCCAAGAGGACGGGCCGCTAACGCGACGGCAGTGCTTAGCTTC
GGCGATCTCGAGCATGGGGCTCCTAGCGGCGGCGGCAGCGGCTGTGGCGC
GCGACGCTCCTAAGGTGCCGCCGCGAGCTCGGCTACCTGAAGGAGACACT
CAAGGAAGCGACTACATGGAGCTAGGGGGAGGGTCGAAAAGCTTTGCCAA
ACCGAGGATCCGTTACTCAGACTTCGAGACCATGAAAAACGGGCTACAGT
TCAAAGATGCCAAAGTGGGTACCGGGAACCCGGCTACTGTGGGCGACAGA
GTGGTGATGGATTGGGAGGGATACACAATCGAGACTTCGAGACCATGAAA
AACGGGCTACAGTTCAAAGATGCCAAAGTGGGTACCGGGAACCCGGCTAC
TGTGGGCGACAGAGTGGTGATGGATTGGGAGGGATACACAATCGGTTACA
ATGGCGGCGTGTTCGAAACGACTAAGGGACCTAAGGGTGGGGCATACGAC
GAGGACAAGACGTCTACACGTTTCGTGCTCGGAAAGGGCACGATCATTCC
CGGCTTGGAGCAAGGGATCCTGGGCATGAAGCCAGGGGGAGTGCGACAGA
TCGTGGTACCCCCCGAGGTTACAATGGCGGCGTGTTCGAAACGACTAAGG
GACCTAAGGGTGGGGCATACGACGAGGACAAGACGTCTACACGTTTCGTG
CTCGGAAAGGGCACGATCATTCCCGGCTTGGAGCAAGGGATCCTGGGCAT
GAAGCCAGGGGGAGTGCGACAGATCGTGGTACCCCCCGAGCTGGGATACC
CGGAGAGTGACCGCAAGCACGAAGTCATCGGTCCCAAGCCTTCTACCTTC
TCCGGCTACCGAACTCTAGACTTCGTGCTCAGCAACCCGGGATACATTGA
TAAGACGCTTCTTTTTACGATTAAGCTCGTCCGTGTCGACAAGCCCGGGG
AACGAGCTTCGAGGGGAATCGGGAAGTAGCTGGGATACCCGGAGAGTGAC
CGCAAGCACGAAGTCATCGGTCCCAAGCCTTCTACCTTCTCCGGCTACCG
AACTCTAGACTTCGTGCTCAGCAACCCGGGATACATTGATAAGACGCTTC
TTTTTACGATTAAGCTCGTCCGTGTCGACAAGCCCGGGGAACGAGCTTCG
AGGGGAATCGGGAAGTAG
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