mRNA_H-paniculata_contig26391.7207.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26391.7207.1
Unique NamemRNA_H-paniculata_contig26391.7207.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26391.7207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26391contigH-paniculata_contig26391:22..552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size284
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26391.7207.1prot_H-paniculata_contig26391.7207.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26391 22..548 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.9129403-CDS-H-paniculata_contig26391:21..691622929789.9129403-CDS-H-paniculata_contig26391:21..69Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26391 22..69 -
1691481011.677575-CDS-H-paniculata_contig26391:21..691691481011.677575-CDS-H-paniculata_contig26391:21..69Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26391 22..69 -
1622929789.9317067-CDS-H-paniculata_contig26391:317..5481622929789.9317067-CDS-H-paniculata_contig26391:317..548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26391 318..548 -
1691481011.6888273-CDS-H-paniculata_contig26391:317..5481691481011.6888273-CDS-H-paniculata_contig26391:317..548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26391 318..548 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.9468973-UTR-H-paniculata_contig26391:548..5521622929789.9468973-UTR-H-paniculata_contig26391:548..552Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26391 549..552 -
1691481011.701665-UTR-H-paniculata_contig26391:548..5521691481011.701665-UTR-H-paniculata_contig26391:548..552Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26391 549..552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26391.7207.1

>prot_H-paniculata_contig26391.7207.1 ID=prot_H-paniculata_contig26391.7207.1|Name=mRNA_H-paniculata_contig26391.7207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MAAACRENTRTGLWSKMLSADKPQKMVGSKLLPINVPESNVPHTVHEEMA
SRQDGADGSPARQVAMMAAAVKGLEIKESDIHGVGLFAINDMD
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mRNA from alignment at H-paniculata_contig26391:22..552-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26391.7207.1 ID=mRNA_H-paniculata_contig26391.7207.1|Name=mRNA_H-paniculata_contig26391.7207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=531bp|location=Sequence derived from alignment at H-paniculata_contig26391:22..552- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGACATGGCTGCTGCCTGCCGCGAGAACACCCGGACAGGGCTGTGGTCGA
AGATGCTATCGGCGGACAAGCCCCAGAAAATGGTGGGAAGTAAACTCCTA
CCCATCAACGTCCCGGAGTCCAACGTTCCACACACCGTACACGAGGAGAT
GGCGTCCAGACAGGACGGAGCGGACGGCTCCCCTGCCCGGCAGGTCGCCA
TGATGGCGGCTGCTGTCAAGGGCCTTGAGATAAAGGTATGTACCTCGATC
AGAGCTGTGCATGGGACAGCCGGGCTTCATGTTGTGCGATTATCGGGGCT
TGTTTGCTGTTGCTGAATAGTGGTATGTACCATGTATATATTTGAGCTTA
TGTGTGAATCGGGTAGAAAGTCTAAGTTAAGTACTTAGCCGACCTCCTCC
CCCACCATGTGATCACACTAATTTCGAACTCACTTGTGACGCCTTTCCAC
CCTTCCGTCCGATATATTCACCTTTCGTTACAGGAGTCTGACATTCATGG
CGTTGGGCTGTTTGCGATCAACGACATGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig26391:22..552-

>mRNA_H-paniculata_contig26391.7207.1 ID=mRNA_H-paniculata_contig26391.7207.1|Name=mRNA_H-paniculata_contig26391.7207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig26391:22..552- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGCTGCCTGCCGCGAGAACACCCGGACAGGGCTGTGGTCGAAGAT
GCTATCGGCGGACAAGCCCCAGAAAATGGTGGGAAGTAAACTCCTACCCA
TCAACGTCCCGGAGTCCAACGTTCCACACACCGTACACGAGGAGATGGCG
TCCAGACAGGACGGAGCGGACGGCTCCCCTGCCCGGCAGGTCGCCATGAT
GGCGGCTGCTGTCAAGGGCCTTGAGATAAAGATGGCTGCTGCCTGCCGCG
AGAACACCCGGACAGGGCTGTGGTCGAAGATGCTATCGGCGGACAAGCCC
CAGAAAATGGTGGGAAGTAAACTCCTACCCATCAACGTCCCGGAGTCCAA
CGTTCCACACACCGTACACGAGGAGATGGCGTCCAGACAGGACGGAGCGG
ACGGCTCCCCTGCCCGGCAGGTCGCCATGATGGCGGCTGCTGTCAAGGGC
CTTGAGATAAAGGAGTCTGACATTCATGGCGTTGGGCTGTTTGCGATCAA
CGACATGGATGAGTCTGACATTCATGGCGTTGGGCTGTTTGCGATCAACG
ACATGGAT
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