mRNA_H-paniculata_contig2639.7206.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2639.7206.1
Unique NamemRNA_H-paniculata_contig2639.7206.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2639.7206.1 vs. uniprot
Match: D8LRS3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRS3_ECTSI)

HSP 1 Score: 700 bits (1807), Expect = 1.030e-243
Identity = 400/577 (69.32%), Postives = 472/577 (81.80%), Query Frame = 3 
Query:  381 HVDVGPAG-GRIAELVALATETTNRLERLWDEVGYSSGEKRRQMGGLLDGFRTLCENKEKQEQGVKNQFESSIADAKSRIKRDRKKLGEEHAEDCSAEDMSLTDQLSHFESEAGSLAEMVTAQREKFKKLSEEVVHMSIVLGDDAETDLEEWKDLGSSLTDARLQAFKDKKVELNKATEDRMQTVASIVRSIQELMEELQISPTTPLDNRVLGSLAIPSAEGIPILQTTERTASSVGIDRTALDELTVRQQELLVQRDARREKLEKMGEEILDLWQQLGIGKYEQDMFALSVDGMGVQTLEHGEQELNRLRKLKVEKIGELMHVARARLQKLWDEMGCSDTERLAFKPMQVTEDGFTDELLRQHTQEAGALEVKLSTMRNILEKIEEREALVEQRILNETSKKDPGRLLVKCSSVNERRQQQKMLKMELDAEQRVKNRLPVLTNALTKIIPQWESAQASAFMYKGERYLDVLHRSEEEYAALKDQIKAAKDAKKKEEFRKLAMASPAPKSSNSVALGR-ETPRSVRKAPGSSRKLPSANSTVKAPRTPAHRGA------PSRTPNGPADMTTPERKT 2087
            +VD  PA  GRI EL   A +TT+RLE LWDEVGY+S EKRRQM GL+DGF+TLCENKEKQE+GVK+QF +SIADAK RIK  RKKLG+EH ED S +DMSLTDQL+++E EA ++ +M  AQ+EKF+KLSEE+VHMS+VLGDD++ DL EW+DL SSLT+ RLQAFKDKK ELNKATEDRMQTVAS+V ++Q+LMEEL+I   T LDNR+LGSLAIPS+ G+P+LQTTERTASSVGIDR ALDEL  + +EL+ QR+ RREKLEKMGEEILDLWQQL IGK EQD+FA SVDGMG+QTLE GE ELNRLRKLK+EK+GEL+  +RA++++LWDE+G S+TERLAFKPM VTE+GFTDELL+QHTQEA  L  K  TM++ILEKIEERE LVEQRI  ETS KDP RL  K S   ERR+Q++ L+ EL+ E+R+KNRLP+LT +L+K IPQWE+AQ S F+YKGERYLD L RSE+EY ALKDQIKAAK A KKEE RK AMASPAPKS NSVALGR ETPRS RK PGSSRK    +S++KAPRTPAH  A      P+   + P  MTTP  KT
Sbjct:    4 YVDDAPAADGRIVEL---AKQTTSRLEVLWDEVGYTSEEKRRQMQGLVDGFQTLCENKEKQEEGVKSQFVTSIADAKDRIKTARKKLGQEHTEDSSTDDMSLTDQLAYYEMEADAIKKMCKAQQEKFEKLSEELVHMSMVLGDDSDADLAEWRDLESSLTNERLQAFKDKKTELNKATEDRMQTVASLVSTVQDLMEELKIPAATALDNRILGSLAIPSSTGVPVLQTTERTASSVGIDRAALDELAAKHEELITQRNTRREKLEKMGEEILDLWQQLDIGKDEQDVFAKSVDGMGLQTLEAGETELNRLRKLKLEKMGELVLASRAKIRELWDEIGYSETERLAFKPMLVTEEGFTDELLQQHTQEADKLATKFETMKHILEKIEERETLVEQRIEYETSTKDPSRLRPKGSQ-EERREQRRRLQEELETEKRIKNRLPMLTISLSKTIPQWENAQDSVFLYKGERYLDTLQRSEDEYLALKDQIKAAKAATKKEELRKHAMASPAPKSLNSVALGRGETPRSTRKQPGSSRKA-GPSSSIKAPRTPAHGHAGKTTQVPASKKSAPVGMTTPNPKT 575
[Close]
BLAST of mRNA_H-paniculata_contig2639.7206.1 vs. uniprot
Match: A0A1Z5JIC7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIC7_FISSO)

HSP 1 Score: 229 bits (583), Expect = 1.030e-61
Identity = 176/515 (34.17%), Postives = 269/515 (52.23%), Query Frame = 3 
Query:  363 RTMSIEHVDVGPAGGRIAELVALATETTNRLERLWDEVGYSSGEKRRQMGGLLDGFRTLCENKEKQEQGVKNQFESSIADAKSRIKR---------DRKKLGEEHAEDCSAEDMSLTDQLSHFESEAGSLAEMVTAQREKFKKLSEEVVHMSIVLGDDAETDLEEWKDLGSSLTDARLQAFKDKKVELNKATEDRMQTVASIVRSIQELMEELQISPT---TPLDNRVLGSLAIPSAEGIPILQTTERTASSVGIDRTALDELTVRQQELLVQRDARREKLEKMGEEILDLWQQLGIGKYEQDMFALSVDGMGVQTLEHGEQELNRLRKLKVEKIGELMHVARARLQKLWDEMGCSDTERLAFKPMQVT-EDGFTDELLRQHTQEAGALEVKLSTMRNILEKIEEREALVEQRILNETSKKDPGRLLVKCSSVNERRQQQKMLKMELDAEQRVKNRLPVLTNALTKIIPQWESAQASAFMYKGERYLDVLHRSEEEYAALKDQIKAAKDAKKKEE 1868
            R+ SI    + P+      L  LA  T N+LE +WDEVGYS  ++  Q+  LL  F+ +C  K  +E+ V   F  +I  AK  IK+         D K L E       + + +L+D+L+  E+    L E     +E  K   E ++     LG + +     W+D+ S LT  R + F  KK E+ +    R   V  +VR  Q LM +L+I      T  D RV GSL + S +G  I+ +   + S VGI  +A+++LT R  EL  ++ AR+ +LE+MG  I  LW++L I + +Q  F  SV G+G+ T+E G +EL RL+ LK + +G+L+  AR R+ +LW+++      R  F P ++  ED F D+LL QH + A  L  +L  M+ IL  IE REA+V +R   E  +KDP RL  + +++       + L  E    +R+K  LP LT  L + + +W+      F Y+GE+YLD++ R EEE+   K +    K  KK+EE
Sbjct:   61 RSGSIVPTLLSPSRTITETLATLAASTGNQLEEIWDEVGYSPEDRAAQLSDLLVKFQDICAEKIAEERNVAETFRQTIVQAKDEIKKTASALKVAVDPKLLRE-------SSEHTLSDELAMLETTLEGLREAADTAKEDLKACLEYLIESHAALGLELDPS---WRDIESDLTARRREEFHRKKTEMKEEISSRCSAVIQLVRDCQHLMADLKIEAERDGTAFDRRVAGSL-VRSKDGSFIMSSKFSSDSCVGISASAIEDLTNRVAELHKEKRARKVQLEEMGGAIAMLWEKLHIPEEDQIAFTESVQGLGLDTIEKGRRELQRLQILKSQMLGKLIQEARDRIVELWEQIDAPREYRDQFTPFKIQLEDCFDDKLLEQHEEYAYNLYSRLEQMKPILRIIERREAIVRERFEYEELQKDPDRLQQRGAAMT------RQLMEEEKMARRIKRELPRLTELLVEKLIEWKDLNGEDFQYRGEKYLDLMERQEEEWNQYKAEELQRKLKKKQEE 558
[Close]
BLAST of mRNA_H-paniculata_contig2639.7206.1 vs. uniprot
Match: B7FQQ0_PHATC (MAP65_ASE1 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FQQ0_PHATC)

HSP 1 Score: 218 bits (554), Expect = 1.060e-57
Identity = 169/505 (33.47%), Postives = 260/505 (51.49%), Query Frame = 3 
Query:  420 LVALATETTNRLERLWDEVGYSSGEKRRQMGGLLDGFRTLCENKEKQEQGVKNQFESSIADAKSRIKRDRKKLGEEHAEDCSAED--MSLTDQLSHFESEAGSLAEMVTAQREKFKKLSEEVVHMSIVLGDDAETDLEEWKDLGSSLTDARLQAFKDKKVELNKATEDRMQTVASIVRSIQELMEELQISPTTP---LDNRVLGSLAIPSAEGIPILQTTERTASSVGIDRTALDELTVRQQELLVQRDARREKLEKMGEEILDLWQQLGIGKYEQDMFALSVDGMGVQTLEHGEQELNRLRKLKVEKIGELMHVARARLQKLWDEMGCSDTERLAFKPMQVTEDGF-TDELLRQHTQEAGALEVKLSTMRNILEKIEEREALVEQRILNETSKKDPGRLLVKCSSVNERRQQQKMLKMELDAEQRVKNRLPVLTNALTKIIPQWESAQASAFMYKGERYLDVLHRSEEEYAALKDQIKAAKDAKKKEEF----RKLAMASPAPK 1904
            L  LA  T ++LE  WDEVGYS  ++  Q+  LL  FR LCE+K  +E+GV   F  +IA+AK  I+     L          E   M+LTD+LS  ES    L     A +E  K   + ++     LG + E     W+D+ S LT  R   F  KK E+ +    R   V  ++R  Q L  +L+I   T    +D ++ GSL + S +G  I+ +  ++ +  GI   AL++LT R  EL  ++  R+  L++MG +I  LW++L + + EQ  F  SV G+G+ T+E GE EL RL  LK + + +L+  AR  +  LW+++  +  +R AF+P  + +     D+LL ++      LE +L  M+ IL  IE RE ++++R   E  +KDP RL  + +S+  +      L  E    +R+K  LP LT  LT+ + +W+      F Y GE YL V+ R EE++   K +    K  KK+EE      + A A+P PK
Sbjct:   74 LTTLAASTAHQLEETWDEVGYSPEDRASQLSDLLVKFRDLCEHKIAEEKGVAETFRQTIAEAKEEIETTASALKMSIDPQILQEQPGMTLTDRLSSLESTLDELRSTAIAAKEDLKVCQDFLIESHEALGIEMEIT---WRDIDSDLTALRRDEFHRKKAEMKEELSTRTSAVIQLLRDCQHLHNDLRIDAGTSDSEIDRQIAGSL-VRSKDGSFIMASKFKSEACTGISSCALEDLTKRVTELHGEKRRRKSHLQEMGAQIAVLWEKLRVPEEEQVAFTESVQGLGMDTIEKGENELKRLHALKSQMLDKLIEEARQNIFSLWEQINATPEQRRAFEPFYIRDRNLHNDDLLEKYEDYVATLESRLEQMKPILRIIERRELILKERAEYEELQKDPERLKQRGASMTHQ------LMEEEKMARRIKRDLPRLTELLTEKLHEWKENNDEDFQYHGEVYLAVMDRQEEQWNQYKAEEMHRKLKKKQEEKTFGENQFAKANPLPK 568
[Close]
BLAST of mRNA_H-paniculata_contig2639.7206.1 vs. uniprot
Match: A0A448ZGP2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGP2_9STRA)

HSP 1 Score: 173 bits (439), Expect = 4.550e-42
Identity = 135/416 (32.45%), Postives = 218/416 (52.40%), Query Frame = 3 
Query:  672 DMSLTDQLSHFESEAGSLAEMVTAQREKFKKLSEEVVHMSIVLG---DDAETDLEEWKDLGSSLTDARLQAFKDKKVELNKATEDRMQTVASIVRSIQELMEELQISP----TTPLDNRVLGSLAIPSAEGIPILQTTERTASSVGIDRTALDELTVRQQELLVQRDARREKLEKMGEEILDLWQQLGIGKYEQDMFALSVDGMGVQTLEHGEQELNRLRKLKVEKIGELMHVARARLQKLWDEMGCSDTERLAFKPMQVT-EDGFTDELLRQHTQEAGALEVKLSTMRNILEKIEEREALVEQRILNETSKKDPGRLLVKCSSVNERRQQQKMLKMELDAEQRVKNRLPVLTNALTKIIPQWESAQASAFMYKGERYLDVLHRSEEEYAALKD-----QIKAAKDAKKKEEFRKL 1880
            +M+LTD+L++ E+    L       R + ++  E ++     LG   DD       W D+ + LTD R +AF++K  E+ +    R   V  ++R  Q LM ++ I       + LD R+ GSL + S +   ++ +   T +  GI   AL+ LT R  EL  ++  R++ L++MG EI  LW+QL I   EQ  F  SV G+G+ T+E G  EL RL+ LK E +G+L+H AR  +Q+LW E   S  +R +F+P  V  ED F D+LL +H +    L+ +L  M+ I   I  RE ++ +R+  E  +KD  RL  + +++       K L  E    +R+K  LP LT  L + + +W+ +    F Y+G+ Y DV+ + + E+A  K      ++K  +D +  EE R+L
Sbjct:  183 EMTLTDELANLEATLDGLRLDANEARRELQECQEYLIESHSSLGRSLDDC------WSDIENDLTDKRREAFREKVEEMKQEMATRTAAVIQLLRDCQHLMNDIGIDGHAENASDLDRRISGSL-VRSKDSSFMMVSKFETDTCTGISAKALEALTSRASELSSEKRRRKDLLQEMGGEIAALWEQLSIPVEEQRAFTNSVKGLGMDTIEKGSAELQRLKSLKSEMLGKLIHEARENIQQLWKETNGSYEQRKSFEPFVVRDEDLFDDKLLDEHEEYIAVLQDRLEKMKPINRIINRREDIIRERMEYEELQKDSDRLKQRGAAMA------KQLMEEEKMARRIKKELPKLTKMLQEKLNEWKESHGEDFQYQGQIYFDVMEQQDAEWAEYKKNEMQLKLKKKQDHQIHEENRQL 585
[Close]
BLAST of mRNA_H-paniculata_contig2639.7206.1 vs. uniprot
Match: A0A4D9D0U8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0U8_9STRA)

HSP 1 Score: 162 bits (410), Expect = 7.100e-38
Identity = 115/364 (31.59%), Postives = 191/364 (52.47%), Query Frame = 3 
Query:  417 ELVALATETTNRLERLWDEVGYSSGEKRRQMGGLLDGFRTLCENKEKQEQGVKNQFESSIADAKSRIKRDRKKLGEEHAEDCSAEDM-------SLTDQLSHFESEAGSLAEMVTAQREKFKKLSEEVVHMSIVLGDDAETDLEEWKDLGSSLTDARLQAFKDKKVELNKATEDRMQTVASIVRSIQELMEELQISPTTPLDNRVLGSLAIPSAEGIPILQTTERTASSVGIDRTALDELTVRQQELLVQRDARREKLEKMGEEILDLWQQLGIGKYEQDMFALSVDGMGVQTLEHGEQELNRLRKLKVEKIGELMHVARARLQKLWDEMGCSDTERLAFKPMQVTEDGFTDELLRQHTQEAGA 1487
            +L  LA  T   LE LW+EVG SS E+R  + GL+  F  LC  K ++E+ V++QF SSIA  +  +      LG +     +   +       +LTDQ++  E     L E   A+  + +   E    +   +G+  +    E KDL    ++A+L+  + K + +++A E+R + V  +V   Q LM EL+   T  ++ ++L SL          L +   T S VG+    +  L+     L+ ++  R ++L+ +G++I  LW +L +   +++ F+ SVDG+G  TLE GE+EL RL+ LK EK+G L+  +RA++  LW+EM     ER  F  ++V  +G+ DELL+ H +E  A
Sbjct:   33 QLFCLANATAGSLEALWEEVGCSSEERREHLKGLVVEFERLCTEKVREEESVRDQFRSSIAQLRQEMVELTACLGHDSPPSSTRASLGSDRKSANLTDQVADLEEGLEGLREQKDARLRRIRATRERAEGLLAKMGEPVDPIFLEEKDL----SEAKLEEVRVKGLMVDQACEERQRMVVQLVLDCQTLMRELKWEATEAVEKQILTSLVHGK------LSSLAATPSCVGVHNETVQALSEMANALMAEKVRRADRLKTLGDQIAGLWDRLKVPDQDREAFSASVDGLGPDTLEAGERELGRLQSLKREKLGSLIAESRAQITGLWEEMAVGLVEREGFGALRVGPEGYCDELLQAHEEETSA 386
[Close]
BLAST of mRNA_H-paniculata_contig2639.7206.1 vs. uniprot
Match: A0A2R5G1T1_9STRA (65-kDa microtubule-associated protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G1T1_9STRA)

HSP 1 Score: 139 bits (349), Expect = 7.120e-31
Identity = 133/499 (26.65%), Postives = 231/499 (46.29%), Query Frame = 3 
Query:  366 TMSIEHVDVGPAGGRIAELVALATETTNRLERLWDEVGYSSGEKRRQMGGLLDGFRTLCENKEKQEQGVKNQFESSIADAKSRIKRDRKKLGEEHAEDCSAEDMSLTDQLSHFESEAGSLAEMVTAQREKFKKLSEEVVHMSIVLGDDAETDLEEWKDLGSSLTDARLQAFKDKKVELNKATEDRMQTVASIVRSIQELMEELQISPTTPLDNRVLGSLAIPSAEGIPILQTTERTASSVGIDRTALDELTVRQQELLVQRDARREKLEKMGEEILDLWQQLGIGKYEQDMFALSVDGMGVQTLEHGEQELNRLRKLKVEKIGELMHVARARLQKLWDEMGCSDTERLAFKPMQVTEDGFTDELLRQHTQEAGALEVKLSTMRNILEKIEEREALVEQRILNETSKKDPGRLLVKCSSVNERRQQQKMLKMELDAEQRVKNRLPVLTNALTKIIPQWESAQASAFMYKGERYLDVLHRSEEEYAALKDQIKAAKDAKKK 1862
            +++ E V  G +   + +L  L+ ETT +L R+WDE+G S  E+  Q+  LL+   T+   K   E  +++++ S+ A  +  I    ++LG         +  +L  +L+   S    LA+    + E+  KL +    +  +     E +  +  DL + LT   +Q ++ K +E       R+  +   +R I  L EEL+      +D  ++        EG             +GID  A+  L+ R +EL  ++ +R E+L+++G +I  LW++L +    +  F +   G+GV  +   E EL RL  LK E +G+L+  A+A++Q+LWDEM   D +R AF    +      D L+  H +E   L ++    R IL+ +E  E L E+R   E   +D  RLL +             L+ E    +RV   LP     +   I ++E  +   F+  G R+++ +   E E+A    Q+  AK+ KKK
Sbjct:   37 SLNEEGVRTGISIVELQKLQKLSKETTEKLHRVWDEMGLSPEERSLQLNSLLEAVETVFTQKVGDEVALRDEYISAAASLEKEIDAISEQLGMPRKHFPHGDSGNLMVKLTWLRSH---LADFQAIKEERMTKLEDMCTRLQEIRIQMGEIEDNQLMDLDAFLTQEAMQDYESKLIEATHHKTRRIAAIQETIRDITALFEELEYDIQDDIDKAIM--------EG----------GEGLGIDMDAVAILSQRARELTDEKISRTERLKQLGSQIQPLWERLDVDTDTRQKFFMDNRGLGVGVIRQCELELERLIHLKQEMMGDLIRNAQAKIQELWDEMKFDDEQREAFTHAHMMAPICEDTLIA-HEEEIAVLNIQAELYRPILKAVERYEQLCEERDDYEAKIQDSSRLLSRKGG--------SALREEEAQRRRVTQGLPRTIEKIKNTIAEYEE-EHGPFVLNGRRFVETMDEMEIEHAR---QLAEAKERKKK 501
[Close]
BLAST of mRNA_H-paniculata_contig2639.7206.1 vs. uniprot
Match: A0A835YL47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL47_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.710e-19
Identity = 79/205 (38.54%), Postives = 101/205 (49.27%), Query Frame = 3 
Query: 1353 RARLQKLWDEMGCSDTE-RLAFKPMQVTEDGFTDELLRQHTQEAGALEVKLSTMRNILEKIEEREALVEQRILNETSKKDPGRLLVKC---------------------------------SSVNERRQQ-QKMLKMELDAEQRVKNRLPVLTNALTKIIPQWESAQASAFMYKGERYLDVLHRSEEEYAALKDQIKAAKDAKKK 1862
            R RL  LW E+G +D + R  F P  +     +D  L+ H +E   L + L +MR +LE+I ERE L  +RI   T +KDP RL                                     S V  R    QK L  EL+ E+RVK RLP LT  L K + QWE A   AF + G+RYLD + RSEEEY A+KD +K AK+A KK
Sbjct:    9 RERLAALWLELGVTDEQGRAGFTPYTIDAGTCSDTELQAHVEEVKRLTLLLESMRPLLERIREREELCLERIEELTVEKDPNRLXXXXXXXXXXXXXXXXXXXKELCLERGYIRTRVENHPSRVKTRDPTLQKQLAAELEMEKRVKKRLPKLTEHLKKALAQWEDAHGGAFEWHGKRYLDRIERSEEEYNAVKDSVKLAKEAIKK 213
[Close]
BLAST of mRNA_H-paniculata_contig2639.7206.1 vs. uniprot
Match: A0A074Y9T5_AURSE (Uncharacterized protein n=31 Tax=Aureobasidium TaxID=5579 RepID=A0A074Y9T5_AURSE)

HSP 1 Score: 98.6 bits (244), Expect = 1.810e-17
Identity = 77/270 (28.52%), Postives = 137/270 (50.74%), Query Frame = 3 
Query: 1014 GSLAIPSAE-GIPILQTTERTASSVGIDRTALDELTVRQQELLVQRDARREKLEKMGEEILDLWQQLGIGKYEQDMFALSVDGMGVQTLEHGEQELNRLRKLKVEKIGELMHVARARLQKLWDEMGCSDTERLAFKPMQVTEDGFTDELLRQHTQEAGALEVKLSTMRNILEKIEEREALVEQRILNETSKKDPGRLLVKCSSVNERRQQQKMLKMELDAEQRVKNRLPVLTNALTKIIPQWESAQASAFMYKGERYLDVLHRSEEEYAA 1820
            G L  P A+    I++        +G+ +  L  L  ++++LL ++  R  ++E++ E+I+ LW +LG+ + E+  F  S  G G++ +   E EL RL +LK + +   +  AR +LQ+LWD +  ++ E L F P     D ++D LL  H  E   LE         L  +++  +LV+ R     S +D  RL+++     E+R   ++L+ E    +R+   LP + + L +I+ +WE      F+  GERYLD L  + +  +A
Sbjct:  201 GELGTPQAQVDSTIVKHARNAPEQLGLHQDDLTRLKGKKEKLLAEKRNREVRVEELKEDIVTLWDKLGVDESERKPFLASNRGCGLRAINEFEDELARLNELKRQNLHLFVEDARFKLQELWDGLYFAEEEMLEFTP--AFSDVYSDALLEAHEAEIARLEALKEQRAPTLAMVDKYRSLVKDRDDLAASSQDASRLMLRGQK-GEKRDPTRLLREE-KMRKRIAKDLPKVESDLRQILEEWEEEYGRPFLVHGERYLDELEATSQRASA 466
[Close]
BLAST of mRNA_H-paniculata_contig2639.7206.1 vs. uniprot
Match: A0A2T4BB13_9HYPO (Uncharacterized protein n=1 Tax=Trichoderma citrinoviride TaxID=58853 RepID=A0A2T4BB13_9HYPO)

HSP 1 Score: 97.4 bits (241), Expect = 3.840e-17
Identity = 82/289 (28.37%), Postives = 140/289 (48.44%), Query Frame = 3 
Query:  933 ASIVRSIQELMEELQISPTTPLDNRVL---GSLAIPSAE-GIPILQTTERTASSVGIDRTALDELTVRQQELLVQRDARREKLEKMGEEILDLWQQLGIGKYEQDMFALSVDGMGVQTLEHGEQELNRLRKLKVEKIGELMHVARARLQKLWDEMGCSDTERLAFKPMQVTEDGFTDELLRQHTQEAGALEVKLSTMRNILEKIEEREALVEQRILNETSKKDPGRLLVKCSSVNERRQQQKMLKMELDAEQRVKNRLPVLTNALTKIIPQWESAQASAFMYKGERYLD 1787
            A   R  +E    L +  T  L + ++     L  P A+    I++    +   +G+ +  +  L  +  +L  ++ +R EKL+++   +  LW++LGI + E   F  +  G G++ +   E EL RL ++K + +   +  AR RLQ+LWD +  S+ E L F P     D  TD LL  H +E   LE        IL  +++ +AL++ R     + +D  RL+++     E+R   K+L+ E    +R+   LP +T  + K + QWE      F+  GERYLD
Sbjct:  172 AEFTRVYEEYNRRLSVVET--LGDEIIQLWAELGTPQAQQDTAIIKYYRESPEQLGLHQEDIRSLQAKHDKLSEEKKSREEKLKQLKASVESLWEKLGIDEEETKAFLNANRGCGIRQINEFEDELERLNEVKRQNLHIFIDDARVRLQELWDALYFSEDEMLEFTP--AFSDVHTDALLEAHEREVARLEALKEQRAPILNLVDKHKALMKDRDELIAASQDASRLMLRGQK-GEKRDPGKLLREE-KMRKRIAKELPRVTAEVRKALEQWEEEYDRPFLVYGERYLD 454
[Close]
BLAST of mRNA_H-paniculata_contig2639.7206.1 vs. uniprot
Match: A0A395NU29_TRIAR (Microtubule-associated, map65 ase1-type n=1 Tax=Trichoderma arundinaceum TaxID=490622 RepID=A0A395NU29_TRIAR)

HSP 1 Score: 94.4 bits (233), Expect = 3.690e-16
Identity = 70/235 (29.79%), Postives = 118/235 (50.21%), Query Frame = 3 
Query: 1083 VGIDRTALDELTVRQQELLVQRDARREKLEKMGEEILDLWQQLGIGKYEQDMFALSVDGMGVQTLEHGEQELNRLRKLKVEKIGELMHVARARLQKLWDEMGCSDTERLAFKPMQVTEDGFTDELLRQHTQEAGALEVKLSTMRNILEKIEEREALVEQRILNETSKKDPGRLLVKCSSVNERRQQQKMLKMELDAEQRVKNRLPVLTNALTKIIPQWESAQASAFMYKGERYLD 1787
            +G+ +  +D L     +L  ++  R +KL  +   + +LW++LGI + E   F     G G++ +   E EL RL ++K + +   +   R RLQ+LWD +  S+ E L F P     D ++D LL  H +E   LE         L+ +++ + L++ R     S +D  RL+++     E+R   K+L+ E    +R+   LP +T  L K++ QWE      F+  GERYLD
Sbjct:  224 LGLHQDDIDHLQAMHDKLSEEKKNREKKLLHLKATVENLWEKLGIDEQETKAFLNQNRGCGIRQINEFEDELERLNEVKRQNMHIFIEDTRVRLQELWDALYFSEDEMLEFTP--AFSDVYSDALLEAHEREVARLEALREERAPTLDLVDKHKGLIKDRDELIASSQDASRLMLRGQK-GEKRDPGKLLREE-KMRKRIAKELPKVTAELRKVLEQWEEEYDRPFLVYGERYLD 454
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2639.7206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRS3_ECTSI1.030e-24369.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Z5JIC7_FISSO1.030e-6134.17Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B7FQQ0_PHATC1.060e-5733.47MAP65_ASE1 n=1 Tax=Phaeodactylum tricornutum (stra... [more]
A0A448ZGP2_9STRA4.550e-4232.45Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A4D9D0U8_9STRA7.100e-3831.59Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A2R5G1T1_9STRA7.120e-3126.6565-kDa microtubule-associated protein 1 n=1 Tax=Ho... [more]
A0A835YL47_9STRA4.710e-1938.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A074Y9T5_AURSE1.810e-1728.52Uncharacterized protein n=31 Tax=Aureobasidium Tax... [more]
A0A2T4BB13_9HYPO3.840e-1728.37Uncharacterized protein n=1 Tax=Trichoderma citrin... [more]
A0A395NU29_TRIAR3.690e-1629.79Microtubule-associated, map65 ase1-type n=1 Tax=Tr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2639contigH-paniculata_contig2639:12063..19737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score722.2
Seed ortholog evalue2.2e-205
Seed eggNOG ortholog2880.D8LRS3
KEGG koko:K16732
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule binding
EggNOG OGsKOG4302@1,KOG4302@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Exons14
Model size2372
Cds size2004
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.6554718-CDS-H-paniculata_contig2639:12062..124761622929789.6554718-CDS-H-paniculata_contig2639:12062..12476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 12063..12476 -
1691481011.5179515-CDS-H-paniculata_contig2639:12062..124761691481011.5179515-CDS-H-paniculata_contig2639:12062..12476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 12063..12476 -
1622929789.6745684-CDS-H-paniculata_contig2639:12663..127591622929789.6745684-CDS-H-paniculata_contig2639:12663..12759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 12664..12759 -
1691481011.5297434-CDS-H-paniculata_contig2639:12663..127591691481011.5297434-CDS-H-paniculata_contig2639:12663..12759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 12664..12759 -
1622929789.6898556-CDS-H-paniculata_contig2639:13412..134971622929789.6898556-CDS-H-paniculata_contig2639:13412..13497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 13413..13497 -
1691481011.540282-CDS-H-paniculata_contig2639:13412..134971691481011.540282-CDS-H-paniculata_contig2639:13412..13497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 13413..13497 -
1622929789.709313-CDS-H-paniculata_contig2639:13813..139421622929789.709313-CDS-H-paniculata_contig2639:13813..13942Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 13814..13942 -
1691481011.5508857-CDS-H-paniculata_contig2639:13813..139421691481011.5508857-CDS-H-paniculata_contig2639:13813..13942Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 13814..13942 -
1622929789.723724-CDS-H-paniculata_contig2639:14068..141901622929789.723724-CDS-H-paniculata_contig2639:14068..14190Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 14069..14190 -
1691481011.5621648-CDS-H-paniculata_contig2639:14068..141901691481011.5621648-CDS-H-paniculata_contig2639:14068..14190Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 14069..14190 -
1622929789.7368505-CDS-H-paniculata_contig2639:14320..144781622929789.7368505-CDS-H-paniculata_contig2639:14320..14478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 14321..14478 -
1691481011.5718884-CDS-H-paniculata_contig2639:14320..144781691481011.5718884-CDS-H-paniculata_contig2639:14320..14478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 14321..14478 -
1622929789.7512288-CDS-H-paniculata_contig2639:14865..150011622929789.7512288-CDS-H-paniculata_contig2639:14865..15001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 14866..15001 -
1691481011.5819824-CDS-H-paniculata_contig2639:14865..150011691481011.5819824-CDS-H-paniculata_contig2639:14865..15001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 14866..15001 -
1622929789.767126-CDS-H-paniculata_contig2639:15245..153291622929789.767126-CDS-H-paniculata_contig2639:15245..15329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 15246..15329 -
1691481011.5910015-CDS-H-paniculata_contig2639:15245..153291691481011.5910015-CDS-H-paniculata_contig2639:15245..15329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 15246..15329 -
1622929789.7810197-CDS-H-paniculata_contig2639:15547..156281622929789.7810197-CDS-H-paniculata_contig2639:15547..15628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 15548..15628 -
1691481011.6023304-CDS-H-paniculata_contig2639:15547..156281691481011.6023304-CDS-H-paniculata_contig2639:15547..15628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 15548..15628 -
1622929789.8000116-CDS-H-paniculata_contig2639:15784..159401622929789.8000116-CDS-H-paniculata_contig2639:15784..15940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 15785..15940 -
1691481011.6117609-CDS-H-paniculata_contig2639:15784..159401691481011.6117609-CDS-H-paniculata_contig2639:15784..15940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 15785..15940 -
1622929789.8148465-CDS-H-paniculata_contig2639:17578..177581622929789.8148465-CDS-H-paniculata_contig2639:17578..17758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 17579..17758 -
1691481011.620841-CDS-H-paniculata_contig2639:17578..177581691481011.620841-CDS-H-paniculata_contig2639:17578..17758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 17579..17758 -
1622929789.8324018-CDS-H-paniculata_contig2639:18376..184511622929789.8324018-CDS-H-paniculata_contig2639:18376..18451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 18377..18451 -
1691481011.6355584-CDS-H-paniculata_contig2639:18376..184511691481011.6355584-CDS-H-paniculata_contig2639:18376..18451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 18377..18451 -
1622929789.8489494-CDS-H-paniculata_contig2639:18722..188271622929789.8489494-CDS-H-paniculata_contig2639:18722..18827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 18723..18827 -
1691481011.646152-CDS-H-paniculata_contig2639:18722..188271691481011.646152-CDS-H-paniculata_contig2639:18722..18827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 18723..18827 -
1622929789.8616738-CDS-H-paniculata_contig2639:19186..193691622929789.8616738-CDS-H-paniculata_contig2639:19186..19369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 19187..19369 -
1691481011.6565146-CDS-H-paniculata_contig2639:19186..193691691481011.6565146-CDS-H-paniculata_contig2639:19186..19369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2639 19187..19369 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.8736308-UTR-H-paniculata_contig2639:19369..197371622929789.8736308-UTR-H-paniculata_contig2639:19369..19737Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2639 19370..19737 -
1691481011.666989-UTR-H-paniculata_contig2639:19369..197371691481011.666989-UTR-H-paniculata_contig2639:19369..19737Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2639 19370..19737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2639.7206.1prot_H-paniculata_contig2639.7206.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2639 12063..19369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2639.7206.1

>prot_H-paniculata_contig2639.7206.1 ID=prot_H-paniculata_contig2639.7206.1|Name=mRNA_H-paniculata_contig2639.7206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=668bp
MSIEHVDVGPAGGRIAELVALATETTNRLERLWDEVGYSSGEKRRQMGGL
LDGFRTLCENKEKQEQGVKNQFESSIADAKSRIKRDRKKLGEEHAEDCSA
EDMSLTDQLSHFESEAGSLAEMVTAQREKFKKLSEEVVHMSIVLGDDAET
DLEEWKDLGSSLTDARLQAFKDKKVELNKATEDRMQTVASIVRSIQELME
ELQISPTTPLDNRVLGSLAIPSAEGIPILQTTERTASSVGIDRTALDELT
VRQQELLVQRDARREKLEKMGEEILDLWQQLGIGKYEQDMFALSVDGMGV
QTLEHGEQELNRLRKLKVEKIGELMHVARARLQKLWDEMGCSDTERLAFK
PMQVTEDGFTDELLRQHTQEAGALEVKLSTMRNILEKIEEREALVEQRIL
NETSKKDPGRLLVKCSSVNERRQQQKMLKMELDAEQRVKNRLPVLTNALT
KIIPQWESAQASAFMYKGERYLDVLHRSEEEYAALKDQIKAAKDAKKKEE
FRKLAMASPAPKSSNSVALGRETPRSVRKAPGSSRKLPSANSTVKAPRTP
AHRGAPSRTPNGPADMTTPERKTSAPSNSESEHPDAGEQYWNGWATAEPL
KNVFYLQMTGYVTLVVCRISVLYVCTPSLYFLFAQIMSSGLSILQGPLVQ
MPGIRWFGDVFLTDRHD*
back to top

mRNA from alignment at H-paniculata_contig2639:12063..19737-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2639.7206.1 ID=mRNA_H-paniculata_contig2639.7206.1|Name=mRNA_H-paniculata_contig2639.7206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7675bp|location=Sequence derived from alignment at H-paniculata_contig2639:12063..19737- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACACGAACAGACAACCTCTGTACCCCTGAAAAACCCCAGCGCTTTCCT
TCCTGAGAAGGGACTTGGTACGTCTTATTGCCTGGCCCCATCCCAGGGGA
CGAAGTGCTTATTCGCGATTGAAGACGTTACTGGGCTAAATAATTGGAGC
TCCATCTTTTTGAAATAATTTGCAACGGTCATACCTGTCTCTCAAATTAA
CTACATCTCTGATATTGTTGCACTTGGCACGCGGTCCGCCGTTGCACTTG
GACGCCTGCCTTGATTAGGACAAGGCCGGGAAATAAGGACGCTATCTTCT
GCCCTCGAACACAAGAGCTGGAAGGTTTCTACTCTAACGTTTCTACTCAT
CTAGCAGAAAGAAGAACCATGTCGATTGAGCATGTCGACGTTGGTCCTGC
TGGAGGTCGAATTGCGGAGTTGGTGGCGCTTGCCACAGAAACAACAAACC
GCCTCGAGCGACTTTGGGATGAAGTTGGATACAGCTCTGGCGAGAAGCGC
AGACAGATGGGGGGTCTTCTCGATGGGTTTCGAACCTTGTGCGAAAACAA
GGTGAGTGGTGGCACAATGCTATCACCTGCATTATTGTAATGTAAAACTG
GAGTAGGGGCACTTTATACGGGCGGGTTCAAAGCGCAAAAAAACACACAA
CGGCCTGTGTTTTGTGTTCGAGTGCATGAGCTTGTGACAATTACAAACAG
TACAAACAGCAGACTGTACAGTCAGTCAGTGAGTGGTGTTCAAAATTGGC
TTGCAGTGAAATATTTGAATATTTCATATTTCATCACACTGATGCCGCAG
ATGCAGCGCGGGTGGATGTACGATGGGTGACCTACAGGATGGAGTATTAT
TAGATAGTGGCAACCGTCCCGATGTATCTCCTACTTCTTCTGGCTCGATC
TTTTTTGCAGGAGAAGCAGGAGCAAGGGGTAAAAAACCAGTTCGAATCCT
CTATCGCGGACGCGAAGAGTCGGATAAAGAGAGACAGAAAAAAGCTGGGG
GAAGAGCACGCGGAGGTATGTATGCCACGCCCTTCCCACACCCGCACACG
CGTAGTATTTGCCTTTTCCCGCACAAGTCGAAACGTCCTAAGCCGATGTG
AATATAGATGTTGCCGCTTGCCTGTACAGGTTGCTCCAATAATCGATGTC
GGAATATAACTGCACAACTACCTTGTACTGTTTACTGATAACTGACTAGG
GGCTGTCTGTTGTACCTTAAGTCACCTCGGTCATCAGCAAAACTGAGTGC
ACGTTCAAATTTTAAACTGTGCGGTAAATCTCTCAGGACTGCTCGGCTGA
GGACATGAGCCTTACAGACCAACTGTCGCACTTCGAATCAGAAGCAGGCT
CTCTGGCGGAGGTGAGCAAGGCGTATGTTTTGCGTTCTATGTTTGCCCTG
CAACATTTTGGCGAGGTAGTACGCTGGGGAATCAAATTTATGCCTGAACA
GACAGTACAATATAGTAGTGGCTGACTGTAGAGACAGAGTGACCTTAAGG
TGTCACCGGTTGGTCTATTTGTCATTGGATAGCGTAGAATGGAGTAGAAA
TATAGAAACCTGCAACCGCGAAATTGAGCTCCCCAGCAGAGGTATAAAAG
CAAAAGCGAATAGAACCGACTGTGGCATTCACAGCATCTTAATTACGATG
TATTCATGTTAGTATTACGGCGAGGTCGTGCAGGTCCTCGTTTCACAGCA
GTTTTTCAATCATTTACTCGAATATTTTCTCGAAAATTGAATTTTCGTTG
ACAACTGTGCCTCTGTGCACGCAAGCGTAGAGAAACAGCAAGCGCAGCAA
GCCGTTGTACATGGGTCATGAATTTCGAAAAGTAGGTACGGAGACAAAGT
ACATGATTTCAAGTGTATCGTCTTGGCTGTACTACTAGGTTTCTCACATA
ATGAGCCATCTCCGGCTGCCTGACATGATTTCACAGACACTAAGCAAGGA
AAAACAACCCCTCCCTATTTATTGCACAGATGGTTACGGCTCAGCGGGAG
AAATTCAAGAAGCTTTCGGAGGAAGTGGTGCACATGAGCATTGTCCTCGG
GGATGATGCTGAGACTGACCTCGAGGAGTGGAAAGACCTGGGCTCTTCTC
TCACAGATGCTCGGTTGCAGGCCTTTAAGGACAAGAAAGTCGAGCTCAAC
AAAGCCACGGTATGATTGCCACTCCATTACGACGTGCAGTTTGAGATAAT
AGATTTGTATCTCCTTGGGATTTCAAATAACTTACGAACAACTAGAGAAG
TGCGCGTGGAGTGACGCTAGAGGTGCATGGAAAGCTCCATTGTTGTCGAC
TCAAAGGTTATGTATGCGAGGCACTAAAGATCCCAGTAATGCTAATAACC
GGTTCGAAAAACGAAACGAAAGTGAAAACGACAATGTTCTCGCTTCCGTT
TTGTTTCCCTTTTTGTTTTTTTCGTTTCCTCTACTGTGTCCAGAGGACTC
CAAGACAAATGCGGTATGAAATGTTTTTGGCAATTGCCAAACAGAACGAA
ATAAAACTCAACCAGAACTGGTTGAAAGTTTCTTCGAAAGAGCTGCATGC
ACTGCCTCTAAAACAAAACTTAATTGGCCCCACGGATGCTCTTGGTCAAC
CATATATTATGTCCTTCGTCGGGGTTGAGGTGTACGAAGAACGAAGAGAA
CGGAAGGAAAATAGCTGGTGTGTGACAGCAACATACATGAGAATCCGTAG
CTATAAGCAGGATTTCTGAAAAATATGCAGTCCAATGTTCACGGTGGTAA
TTGCTGCTCTCTCAATATCGAACCCATAATAGTGAATCAAGGCAACCCAT
TTGGTGGTAGACTGGGCTGGCAATGCATAGAGGTGCGGGGCATCTACTAG
GAGTATCTGTAGGTGGTGCTTCACGAGATGAGAGCCCAGGCACTCGTTTC
ACAATGCACCCATGTCAAGAGTCCATCGGCAACTATCACATGGTAATAGG
CAAGGTGCCGATTGATTCGCATGCTTTTTGCGCTGCCCTTCTCTAGTTTT
ACTCAACTTTCTGCCTCGAGGCTTTCTTTATTTTCATAGAGTCGAGAGAT
TGGGCAACTCAGTAAATAATAATCTACCCCTGTAAGTGATTCCGAAATCC
TACCGACAAGAACAGATTCCTTGTGGTATACGTTAATTGTTCTAGTTGAT
GCTAAATTTAGTGCAAGCCAGAACAACAGCCGTAGTTTGAATTGTTTTTA
CCCGGATGTGCCCGCAACTCGAACACATGTCGCTCATACCCTCCAGAACA
CTACTGAAACCGGTCACCAACCACATCCATGCCCCAAAGATGAAGGGAAT
TTTCATCTTGTGGCTCCCTAATGTAACTGCCTGTTACTTCTTGTCCATAG
TGCAGCCGCCAACGGTGCTACACGGTGTAGACTATGTACTTCGTGCTCTA
GGTACCTATTGGCTTGATTTACTCCGGCATGTGGTTCTCATTGTTCGATC
GTCTATACTTCCCAACCTTGGTTTCTTACCACGTGAATCGAGCCCACGCC
AAGTTACGCTTTTTGGGGGGGCGTGAGAAGGAGAGCCCGATGATGTACTG
AAAATTGCGATCAGTAAGAGGAAAAGTGGAGGCAAAAAGTGTAACTGGCG
GGGATGCGAAAAATCGCGACGCCCCACGTGTAAGGTTGTGCGAAGACCAG
GGGTAGGTTCATTATTTACTTTCTTACAGGGGTAGATTCACTACTCGCTA
ACTTGATTCATCGTTTCATTTTCATTCGATAAAGATGAGGTCTTCCGAGC
ACGATTGGTTTACAAATCATGTTTCTGCCCTGTTCCTTTGTCTGCAGGAG
GATCGCATGCAGACAGTAGCATCTATTGTGCGCTCGATTCAGGAGCTCAT
GGAGGAACTTCAGATTTCCCCTACAACACCGCTGGATAATCGCGTTCTGG
GGTCTCTGGCAATACCATCGGCTGAAGGGATACCTATACTACAGACAACG
GAGGTATTTGCGGCTACTTAGTTGCAACAGTTTCTAAGAATCGTAACTGA
ATTATTACCGTGTCTTTTTGCAGTGGTAAGTTCGAGTGGTGTGGGTGCTG
AACATGACCCTCCACATAACACCTGACTGATCGACTGCCCTGGTTGATTT
AATCGATAGCGGACGGCGTCATCGGTGGGTATCGACAGGACTGCGCTGGA
CGAGCTGACGGTCAGGCAGCAAGAACTGCTTGTACAGAGGGTGAGTGCAA
CATGTCATGTATGATGCGTTTCGTAGGCGTAGCGCAACTCGCACGGCAAT
CCAGGACGTACCATGTGCCTTAGGACAACACTAATGTAGTTAGTAGATAT
ACCTGTATTATACTGTCTGCGGCCGTGTTACAGTCGGCCCATCATATGCT
GCTGACGAGCAACTCGCCCATTGCCGTATTGCCTTGTACGAAATGTGTTT
GAGGGTAGGACGCTCGCAGAGAGAAGTTGGAGAAGATGGGAGAGGAAATA
CTGGACCTTTGGCAGCAGCTTGGCATTGGTAAATATGAGCAGGTGTGACG
CGATGTAGTGGAGCTATAAATATTGAGTTTTTCGTCTGCGCTGCTGCGCG
ACAGGCCCTCCACTGATGTAACAAAAAATATTTATTTTCTCATGACCTCA
TGTATGCTCCCATCAACTGGTGGCTACAGCAGCGAAGTGATCACACATGT
TCCTGAGTTTCAGTGTATGTTCGATGGCAATCTGCTACGTGATACCATCG
CGCTGAACGAGTCGTTCTTGCCCACGTCACCGCCAGGATATGTTTGCTTT
GAGCGTGGATGGGATGGGAGTTCAGACTCTGGAGCATGGAGAGCAAGAAC
TCAACCGCCTTCGTAAGCTGAAAGTAGAAAAAATTGGGGAACTCATGCAC
GTGGCGAGGGCCCGGCTACAAAGTAAGTTTCATGTTTTCACCTATCCTTG
ACTGTCCGCCCAAGAATCATCGTTTAGTTGGATCTTTCCTAATACGAGTT
GGAAATTACGTTGAGGTCATGTGTTTGTAACTCTTTTTCACCTGACAGAT
TTCCCCCAGCTTAAGTTTTTCTGTGAGATCTAACTTCTCTGCTGCGTGAG
TACGTGCTCGCGACGACACAAGGCTCTCAGAAGTTACGGGTACGCCCAGA
TCCAGGTTGACGCTTCAATTGGCACCTGGTTCGTTTCGCGGTTTCTCGCG
TGGTCACTGTAGACTTGAAAACAGTGGGTTACATGCGTTGTACGACAGCT
CATCGTCATGGTCGTCCGCTATAGTAATGCGCGGGTTCACCTGTTTTTAC
GTGCACCAGAGCTTTGGGATGAAATGGGCTGCTCTGACACAGAAAGATTG
GCGTTCAAGCCGATGCAAGTGACCGAGGATGGTTTCACGGACGAGCTTCT
TCGACAGCACACACAGGAGGCGGGCGCTCTTGAAGTCAAGCTCAGTACCA
TGAGGAATATCCTTGAGGTACGACGATATAGTCGATTATTTATTTCATGC
AGTCAGTCAGATGGTTGGGTTCTAATCAACACGACAAAAACACACCAACA
TTACTGCCAACAGGCTTTCACTGCATGCCTATCATGTGTTATTGCAGAAA
ATCGAGGAACGCGAAGCGCTGGTGGAGCAGAGGATTCTCAACGAGACGAG
CAAGAAGGATCCCGGCCGTCTCTTGGTCAAATGCAGCAGTGTCAACGAAC
GACGCCAGCAGCAGAAGATGTAAGACGAGGCCCCATACCGGATACCCCAG
AATTTCACATGTTTTTTCAGTGTCTCGTGTTGCGAATGGAACCGCTTCGC
GTCAGATGATGAGTTTTACCCCTTACTGCAACTTTCCATGAACAGGCTAA
AGATGGAATTGGACGCAGAGCAAAGGGTGAAGAATCGTCTCCCGGTTCTC
ACGAACGCCCTCACCAAGATCATCCCCCAGTGGGAGAGCGCACAGGCGTC
TGCGTTCATGTACAAAGGAGAAAGGTGATGCACAAGAACTGTACAGAAGT
CAGTGTGGAATCCTTACAGTTGTTCCCACGTGAACGTTTCTATCGCCAAA
TGCGATTAACTGGACACCGACGTCTAGGCAGGGAGAGTGTTGGGTGCTGT
ATGGTCGATAGTGATGAAAGTGCGAATGACCCTCTTGGCCTGACAAAACT
CCATCTTTTCTAGTTGATTTCGCTTGAAACACATATGCATTTCAACCGAG
ATGCGGAACCTCATGGCAGCACCATGCAATCCTTCCTTCTTGCGACCCGC
CTAGTAATGGTAATTCAATCGATCGTGTACCTAATGACAGATATTTGGAT
GTCTTGCACCGATCGGAAGAGGAGTACGCGGCATTGAAGGATCAGATCAA
GGCAGCAAAGGACGCCAAGAAGAAGGTGCCAATACTAAACACAGGAATAC
ACCACAATATTAACATGGTGATGTGTTTGTGCGAGGTAAAATGTGGTGGA
TCGATTCCACTGCTTCACACCGTCAGGCAAAAAATTTGTATCAGATGAAC
ACCATGTATGCGAAAACAAGCAAAGCGTCATTGATTTGTGAACTTCAATT
TGGTTTAGTATGGCTCATATTGAGCTGCCGGTCCCGGACACGAATCCACC
TGTTTCAACGTCTCGCTACAAAACGGATTCTGTTTCCAAAGTCGTAGAAC
TCGCGAAGTTTCCAAGGCACCTTTTTCTTGTGGCTATCCCTGGAATACTA
ACATCTTGTAAACGCAGGCTTTCCTTTCGTGGAGGCCGATGCTTCAAACG
CTTAATTGTCATGAAATCACGAAACTCGCAACTACCAGCACCTTGTTCTC
AGCCGCGTGACTCAAAGTACTGTTTGCAAACAGTGGGACTCACTTGTAGC
TAGACCGCTGTTTGATTGGTCGATTATTCCTGCTATTCTGGTGATATCGT
TATTATTCCCCAGAAGATGAATGGAAAAGCTCTGTGCCCATCTGGTGTTT
ATAAACCACACATCGTTCTCTGGTTTCGCCCATGATTTTGTCTTATTTAC
GTTCGCCTCCCCCCAAATCGGCCAAAAGGAGGAGTTTAGAAAGCTTGCCA
TGGCAAGTCCGGCACCTAAGTCGTCCAACTCGGTGGCCCTCGGAAGAGAA
ACTCCCCGCAGCGTCAGAAAGGCGGTGAGTTGTAAAGTGCGATGGATTTC
AATGCTGTGCAGCTCGCTCATCACAACTATCAGTGTAATGGCCATATGGT
GTTTCGTGCAATTTCCCTTGTGCATCTCTCTAGCATTTTACGCATGAATA
CATTTAAGTGCCATTTAATGTGATGACCAAAACATCTGTTCTTCCCCATC
GCCTTCTACAGCCTGGCTCGTCTCGTAAGTTGCCAAGCGCCAATTCTACC
GTAAAAGCGCCGCGCACTCCAGCTCATCGTGGCGCGCCTTCACGTACACC
GAATGGTCCAGCGGATATGACTACCCCTGAGCGCAAAACATCTGCGCCGT
CCAATTCAGAGTCAGAACATCCAGATGCAGGTGAACAATACTGGAATGGT
TGGGCAACCGCAGAACCCCTTAAAAACGTATTTTACCTTCAAATGACGGG
ATATGTAACGTTAGTTGTGTGCAGAATCTCAGTTTTATATGTATGCACCC
CAAGTTTGTATTTTCTGTTCGCACAAATCATGTCATCAGGCCTCTCCATT
TTGCAAGGTCCACTTGTTCAGATGCCTGGAATTCGGTGGTTCGGCGACGT
GTTTTTGACAGATCGTCATGATTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2639:12063..19737-

>mRNA_H-paniculata_contig2639.7206.1 ID=mRNA_H-paniculata_contig2639.7206.1|Name=mRNA_H-paniculata_contig2639.7206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4008bp|location=Sequence derived from alignment at H-paniculata_contig2639:12063..19737- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGATTGAGCATGTCGACGTTGGTCCTGCTGGAGGTCGAATTGCGGA
GTTGGTGGCGCTTGCCACAGAAACAACAAACCGCCTCGAGCGACTTTGGG
ATGAAGTTGGATACAGCTCTGGCGAGAAGCGCAGACAGATGGGGGGTCTT
CTCGATGGGTTTCGAACCTTGTGCGAAAACAAGATGTCGATTGAGCATGT
CGACGTTGGTCCTGCTGGAGGTCGAATTGCGGAGTTGGTGGCGCTTGCCA
CAGAAACAACAAACCGCCTCGAGCGACTTTGGGATGAAGTTGGATACAGC
TCTGGCGAGAAGCGCAGACAGATGGGGGGTCTTCTCGATGGGTTTCGAAC
CTTGTGCGAAAACAAGGAGAAGCAGGAGCAAGGGGTAAAAAACCAGTTCG
AATCCTCTATCGCGGACGCGAAGAGTCGGATAAAGAGAGACAGAAAAAAG
CTGGGGGAAGAGCACGCGGAGGAGAAGCAGGAGCAAGGGGTAAAAAACCA
GTTCGAATCCTCTATCGCGGACGCGAAGAGTCGGATAAAGAGAGACAGAA
AAAAGCTGGGGGAAGAGCACGCGGAGGACTGCTCGGCTGAGGACATGAGC
CTTACAGACCAACTGTCGCACTTCGAATCAGAAGCAGGCTCTCTGGCGGA
GGACTGCTCGGCTGAGGACATGAGCCTTACAGACCAACTGTCGCACTTCG
AATCAGAAGCAGGCTCTCTGGCGGAGATGGTTACGGCTCAGCGGGAGAAA
TTCAAGAAGCTTTCGGAGGAAGTGGTGCACATGAGCATTGTCCTCGGGGA
TGATGCTGAGACTGACCTCGAGGAGTGGAAAGACCTGGGCTCTTCTCTCA
CAGATGCTCGGTTGCAGGCCTTTAAGGACAAGAAAGTCGAGCTCAACAAA
GCCACGATGGTTACGGCTCAGCGGGAGAAATTCAAGAAGCTTTCGGAGGA
AGTGGTGCACATGAGCATTGTCCTCGGGGATGATGCTGAGACTGACCTCG
AGGAGTGGAAAGACCTGGGCTCTTCTCTCACAGATGCTCGGTTGCAGGCC
TTTAAGGACAAGAAAGTCGAGCTCAACAAAGCCACGGAGGATCGCATGCA
GACAGTAGCATCTATTGTGCGCTCGATTCAGGAGCTCATGGAGGAACTTC
AGATTTCCCCTACAACACCGCTGGATAATCGCGTTCTGGGGTCTCTGGCA
ATACCATCGGCTGAAGGGATACCTATACTACAGACAACGGAGGAGGATCG
CATGCAGACAGTAGCATCTATTGTGCGCTCGATTCAGGAGCTCATGGAGG
AACTTCAGATTTCCCCTACAACACCGCTGGATAATCGCGTTCTGGGGTCT
CTGGCAATACCATCGGCTGAAGGGATACCTATACTACAGACAACGGAGCG
GACGGCGTCATCGGTGGGTATCGACAGGACTGCGCTGGACGAGCTGACGG
TCAGGCAGCAAGAACTGCTTGTACAGAGGCGGACGGCGTCATCGGTGGGT
ATCGACAGGACTGCGCTGGACGAGCTGACGGTCAGGCAGCAAGAACTGCT
TGTACAGAGGGACGCTCGCAGAGAGAAGTTGGAGAAGATGGGAGAGGAAA
TACTGGACCTTTGGCAGCAGCTTGGCATTGGTAAATATGAGCAGGACGCT
CGCAGAGAGAAGTTGGAGAAGATGGGAGAGGAAATACTGGACCTTTGGCA
GCAGCTTGGCATTGGTAAATATGAGCAGGATATGTTTGCTTTGAGCGTGG
ATGGGATGGGAGTTCAGACTCTGGAGCATGGAGAGCAAGAACTCAACCGC
CTTCGTAAGCTGAAAGTAGAAAAAATTGGGGAACTCATGCACGTGGCGAG
GGCCCGGCTACAAAGATATGTTTGCTTTGAGCGTGGATGGGATGGGAGTT
CAGACTCTGGAGCATGGAGAGCAAGAACTCAACCGCCTTCGTAAGCTGAA
AGTAGAAAAAATTGGGGAACTCATGCACGTGGCGAGGGCCCGGCTACAAA
AGCTTTGGGATGAAATGGGCTGCTCTGACACAGAAAGATTGGCGTTCAAG
CCGATGCAAGTGACCGAGGATGGTTTCACGGACGAGCTTCTTCGACAGCA
CACACAGGAGGCGGGCGCTCTTGAAGTCAAGCTCAGTACCATGAGGAATA
TCCTTGAGAGCTTTGGGATGAAATGGGCTGCTCTGACACAGAAAGATTGG
CGTTCAAGCCGATGCAAGTGACCGAGGATGGTTTCACGGACGAGCTTCTT
CGACAGCACACACAGGAGGCGGGCGCTCTTGAAGTCAAGCTCAGTACCAT
GAGGAATATCCTTGAGAAAATCGAGGAACGCGAAGCGCTGGTGGAGCAGA
GGATTCTCAACGAGACGAGCAAGAAGGATCCCGGCCGTCTCTTGGTCAAA
TGCAGCAGTGTCAACGAACGACGCCAGCAGCAGAAGATAAAATCGAGGAA
CGCGAAGCGCTGGTGGAGCAGAGGATTCTCAACGAGACGAGCAAGAAGGA
TCCCGGCCGTCTCTTGGTCAAATGCAGCAGTGTCAACGAACGACGCCAGC
AGCAGAAGATGCTAAAGATGGAATTGGACGCAGAGCAAAGGGTGAAGAAT
CGTCTCCCGGTTCTCACGAACGCCCTCACCAAGATCATCCCCCAGTGGGA
GAGCGCACAGGCGTCTGCGTTCATGTACAAAGGAGAAAGGCTAAAGATGG
AATTGGACGCAGAGCAAAGGGTGAAGAATCGTCTCCCGGTTCTCACGAAC
GCCCTCACCAAGATCATCCCCCAGTGGGAGAGCGCACAGGCGTCTGCGTT
CATGTACAAAGGAGAAAGATATTTGGATGTCTTGCACCGATCGGAAGAGG
AGTACGCGGCATTGAAGGATCAGATCAAGGCAGCAAAGGACGCCAAGAAG
AAGATATTTGGATGTCTTGCACCGATCGGAAGAGGAGTACGCGGCATTGA
AGGATCAGATCAAGGCAGCAAAGGACGCCAAGAAGAAGGAGGAGTTTAGA
AAGCTTGCCATGGCAAGTCCGGCACCTAAGTCGTCCAACTCGGTGGCCCT
CGGAAGAGAAACTCCCCGCAGCGTCAGAAAGGCGGAGGAGTTTAGAAAGC
TTGCCATGGCAAGTCCGGCACCTAAGTCGTCCAACTCGGTGGCCCTCGGA
AGAGAAACTCCCCGCAGCGTCAGAAAGGCGCCTGGCTCGTCTCGTAAGTT
GCCAAGCGCCAATTCTACCGTAAAAGCGCCGCGCACTCCAGCTCATCGTG
GCGCGCCTTCACGTACACCGAATGGTCCAGCGGATATGACTACCCCTGAG
CGCAAAACATCTGCGCCGTCCAATTCAGAGTCAGAACATCCAGATGCAGG
TGAACAATACTGGAATGGTTGGGCAACCGCAGAACCCCTTAAAAACGTAT
TTTACCTTCAAATGACGGGATATGTAACGTTAGTTGTGTGCAGAATCTCA
GTTTTATATGTATGCACCCCAAGTTTGTATTTTCTGTTCGCACAAATCAT
GTCATCAGGCCTCTCCATTTTGCAAGGTCCACTTGTTCAGATGCCTGGAA
TTCGGTGGTTCGGCGACGTGTTTTTGACAGATCGTCATGATTAACCTGGC
TCGTCTCGTAAGTTGCCAAGCGCCAATTCTACCGTAAAAGCGCCGCGCAC
TCCAGCTCATCGTGGCGCGCCTTCACGTACACCGAATGGTCCAGCGGATA
TGACTACCCCTGAGCGCAAAACATCTGCGCCGTCCAATTCAGAGTCAGAA
CATCCAGATGCAGGTGAACAATACTGGAATGGTTGGGCAACCGCAGAACC
CCTTAAAAACGTATTTTACCTTCAAATGACGGGATATGTAACGTTAGTTG
TGTGCAGAATCTCAGTTTTATATGTATGCACCCCAAGTTTGTATTTTCTG
TTCGCACAAATCATGTCATCAGGCCTCTCCATTTTGCAAGGTCCACTTGT
TCAGATGCCTGGAATTCGGTGGTTCGGCGACGTGTTTTTGACAGATCGTC
ATGATTAA
back to top