mRNA_H-paniculata_contig26383.7204.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26383.7204.1
Unique NamemRNA_H-paniculata_contig26383.7204.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26383.7204.1 vs. uniprot
Match: A0A0R6M0J1_UNDPI (50S ribosomal protein L16, chloroplastic n=49 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M0J1_UNDPI)

HSP 1 Score: 238 bits (607), Expect = 3.320e-79
Identity = 118/126 (93.65%), Postives = 122/126 (96.83%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGTILFELSGVPFTLAKDAMKIASYKLP 378
            MLSPKKTKFRKQHRGRLKGKASRGN I+FGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKP+TARAAESRMGSGKGSV+YWVAVVKPGTILFELSGVP  LAK+AM IASYKLP
Sbjct:    1 MLSPKKTKFRKQHRGRLKGKASRGNKISFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPVTARAAESRMGSGKGSVDYWVAVVKPGTILFELSGVPLKLAKEAMIIASYKLP 126
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BLAST of mRNA_H-paniculata_contig26383.7204.1 vs. uniprot
Match: D1J745_ECTSI (50S ribosomal protein L16, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=D1J745_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 9.520e-79
Identity = 117/126 (92.86%), Postives = 122/126 (96.83%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGTILFELSGVPFTLAKDAMKIASYKLP 378
            MLSPKKTKFRKQHRGRLKGKASRGN+INFGDYA+QALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPG ILFEL GVP  LAK+A++IASYKLP
Sbjct:    1 MLSPKKTKFRKQHRGRLKGKASRGNSINFGDYALQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGHILFELGGVPAKLAKEALEIASYKLP 126
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BLAST of mRNA_H-paniculata_contig26383.7204.1 vs. uniprot
Match: A0A1I9LVW6_9PHAE (50S ribosomal protein L16, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW6_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 2.050e-78
Identity = 116/126 (92.06%), Postives = 122/126 (96.83%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGTILFELSGVPFTLAKDAMKIASYKLP 378
            MLSPKKTKF+KQHRGRLKGKASRGN INFG+YA+QALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPG ILFELSGVP  LAK+A++IASYKLP
Sbjct:    1 MLSPKKTKFKKQHRGRLKGKASRGNNINFGEYALQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGHILFELSGVPLKLAKEALQIASYKLP 126
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BLAST of mRNA_H-paniculata_contig26383.7204.1 vs. uniprot
Match: A0A2I4Q2I6_9PHAE (50S ribosomal protein L16, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2I6_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 1.040e-76
Identity = 116/126 (92.06%), Postives = 121/126 (96.03%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGTILFELSGVPFTLAKDAMKIASYKLP 378
            MLSPKKTKF+KQ RGRLKGKAS GNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKG+++YWVA VKPGTILFELSGV  TLAK+AMKIASYKLP
Sbjct:    1 MLSPKKTKFKKQQRGRLKGKASSGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGALDYWVAKVKPGTILFELSGVNPTLAKEAMKIASYKLP 126
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BLAST of mRNA_H-paniculata_contig26383.7204.1 vs. uniprot
Match: A0A8E5BFH8_9PHAE (Ribosomal protein L16 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BFH8_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 1.070e-75
Identity = 110/126 (87.30%), Postives = 118/126 (93.65%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGTILFELSGVPFTLAKDAMKIASYKLP 378
            MLSPKKT F+KQHRGRLKGKASR NTI+FGDYAIQALEP WLTSRQIEATRRTITRYTKRGGKLWI VFPDKPITAR  ESRMGSGKGSV+YWVA++KPGT+LFELSGVP  +AK+AMKIASYKLP
Sbjct:    1 MLSPKKTNFKKQHRGRLKGKASRNNTIHFGDYAIQALEPVWLTSRQIEATRRTITRYTKRGGKLWIKVFPDKPITARVPESRMGSGKGSVDYWVAIIKPGTVLFELSGVPINIAKEAMKIASYKLP 126
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BLAST of mRNA_H-paniculata_contig26383.7204.1 vs. uniprot
Match: A0A8E5XRJ0_9PHAE (50S ribosomal protein L16, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRJ0_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 2.540e-75
Identity = 112/126 (88.89%), Postives = 120/126 (95.24%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGTILFELSGVPFTLAKDAMKIASYKLP 378
            MLSPK+TKFRKQHRGRLKGKA RGN INFG+YAIQALEP W+TSRQIEATRRTITRYTKRGGKLWIT+FPDKPITARAAESRMGSGKGSV+YWVAVVKPG+ILFELSGV   +AK+AMKIASYKLP
Sbjct:    1 MLSPKRTKFRKQHRGRLKGKACRGNKINFGNYAIQALEPAWITSRQIEATRRTITRYTKRGGKLWITIFPDKPITARAAESRMGSGKGSVDYWVAVVKPGSILFELSGVSPKIAKEAMKIASYKLP 126
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BLAST of mRNA_H-paniculata_contig26383.7204.1 vs. uniprot
Match: B2XTE8_HETAK (50S ribosomal protein L16, chloroplastic n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTE8_HETAK)

HSP 1 Score: 225 bits (573), Expect = 5.610e-74
Identity = 110/126 (87.30%), Postives = 117/126 (92.86%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGTILFELSGVPFTLAKDAMKIASYKLP 378
            ML PK+TKFRKQHRGRLKGKA RGN I++GDYA+QALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKP+T RAAESRMGSGKG+VEYWVAVVKPG ILFE+SGVP  LAK AMK ASYKLP
Sbjct:    1 MLLPKRTKFRKQHRGRLKGKACRGNKISYGDYALQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPVTFRAAESRMGSGKGAVEYWVAVVKPGKILFEMSGVPLELAKAAMKTASYKLP 126
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BLAST of mRNA_H-paniculata_contig26383.7204.1 vs. uniprot
Match: A0A7S6UA10_9STRA (50S ribosomal protein L16, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA10_9STRA)

HSP 1 Score: 221 bits (563), Expect = 1.820e-72
Identity = 107/126 (84.92%), Postives = 118/126 (93.65%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGTILFELSGVPFTLAKDAMKIASYKLP 378
            MLSPK+TK+RK HRGRL+GKA RGNT+NFG+YA+QALEPTWLTSRQIEATRRTITRYT+RGGKLWIT+FPDK ITARA ESRMGSGKG+V+YWVAVVKPGTILFELSGV   LAKDA+K ASYKLP
Sbjct:    1 MLSPKRTKYRKYHRGRLRGKACRGNTVNFGNYALQALEPTWLTSRQIEATRRTITRYTRRGGKLWITIFPDKSITARALESRMGSGKGAVDYWVAVVKPGTILFELSGVSERLAKDAIKTASYKLP 126
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BLAST of mRNA_H-paniculata_contig26383.7204.1 vs. uniprot
Match: B7T1X7_VAULI (50S ribosomal protein L16, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1X7_VAULI)

HSP 1 Score: 221 bits (563), Expect = 2.070e-72
Identity = 106/126 (84.13%), Postives = 119/126 (94.44%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGTILFELSGVPFTLAKDAMKIASYKLP 378
            MLSPK+TK+RK+HRGRLKGKASRGN +NFGDY +QALEP W+TSRQIEATRRTITRYTKRGGKLWIT+FP+KP+TARAAESRMGSGKGSV+YWVAVVKPGTILFELSGV   +AK+A+KIAS KLP
Sbjct:    1 MLSPKRTKYRKEHRGRLKGKASRGNKLNFGDYGLQALEPIWITSRQIEATRRTITRYTKRGGKLWITIFPNKPVTARAAESRMGSGKGSVDYWVAVVKPGTILFELSGVSPLIAKEALKIASSKLP 126
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BLAST of mRNA_H-paniculata_contig26383.7204.1 vs. uniprot
Match: A0A1G4NTX4_9FLOR (50S ribosomal protein L16, chloroplastic n=2 Tax=Liagoraceae TaxID=31484 RepID=A0A1G4NTX4_9FLOR)

HSP 1 Score: 219 bits (558), Expect = 1.090e-71
Identity = 105/126 (83.33%), Postives = 116/126 (92.06%), Query Frame = 1 
Query:    1 MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEATRRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPGTILFELSGVPFTLAKDAMKIASYKLP 378
            MLSPK+TKFRKQHRGRLKGKAS+GNTI+FGDYA+QALEP WLTSRQIEATRRTITRY KRGGKLWI VFPDKP+TAR AE+RMGSGKG+ EYWVAV+KPG ILFE++GVP   AK AMK+ASYKLP
Sbjct:    1 MLSPKRTKFRKQHRGRLKGKASKGNTISFGDYALQALEPVWLTSRQIEATRRTITRYVKRGGKLWIRVFPDKPVTARPAETRMGSGKGAPEYWVAVIKPGHILFEMNGVPEKAAKQAMKLASYKLP 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26383.7204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0R6M0J1_UNDPI3.320e-7993.6550S ribosomal protein L16, chloroplastic n=49 Tax=... [more]
D1J745_ECTSI9.520e-7992.8650S ribosomal protein L16, chloroplastic n=6 Tax=P... [more]
A0A1I9LVW6_9PHAE2.050e-7892.0650S ribosomal protein L16, chloroplastic n=1 Tax=P... [more]
A0A2I4Q2I6_9PHAE1.040e-7692.0650S ribosomal protein L16, chloroplastic n=1 Tax=D... [more]
A0A8E5BFH8_9PHAE1.070e-7587.30Ribosomal protein L16 n=1 Tax=Phaeophyceae sp. Tax... [more]
A0A8E5XRJ0_9PHAE2.540e-7588.8950S ribosomal protein L16, chloroplastic n=1 Tax=I... [more]
B2XTE8_HETAK5.610e-7487.3050S ribosomal protein L16, chloroplastic n=2 Tax=H... [more]
A0A7S6UA10_9STRA1.820e-7284.9250S ribosomal protein L16, chloroplastic n=1 Tax=S... [more]
B7T1X7_VAULI2.070e-7284.1350S ribosomal protein L16, chloroplastic n=1 Tax=V... [more]
A0A1G4NTX4_9FLOR1.090e-7183.3350S ribosomal protein L16, chloroplastic n=2 Tax=L... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26383contigH-paniculata_contig26383:3017..3394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.5
Seed ortholog evalue6.8e-60
Seed eggNOG ortholog2880.D1J745
Preferred nameMRPL16
KEGG koko:K02874,ko:K02878,ko:K10756
KEGG Pathwayko03010,ko03030,ko03420,ko03430,map03010,map03030,map03420,map03430
KEGG ModuleM00178,M00179,M00289,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000048,GO:0000313,GO:0000314,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0003824,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005763,GO:0005829,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0010467,GO:0015934,GO:0015935,GO:0016020,GO:0016043,GO:0016740,GO:0016746,GO:0016755,GO:0019538,GO:0019843,GO:0019866,GO:0022411,GO:0022625,GO:0022626,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0097159,GO:0098798,GO:0140053,GO:0140096,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0197@1,KOG3422@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03032,ko03036,ko03400
Exons1
Model size378
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.3860548-CDS-H-paniculata_contig26383:3016..33941622929789.3860548-CDS-H-paniculata_contig26383:3016..3394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26383 3017..3394 +
1691481011.3801782-CDS-H-paniculata_contig26383:3016..33941691481011.3801782-CDS-H-paniculata_contig26383:3016..3394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26383 3017..3394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26383.7204.1prot_H-paniculata_contig26383.7204.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26383 3017..3394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26383.7204.1

>prot_H-paniculata_contig26383.7204.1 ID=prot_H-paniculata_contig26383.7204.1|Name=mRNA_H-paniculata_contig26383.7204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MLSPKKTKFRKQHRGRLKGKASRGNTINFGDYAIQALEPTWLTSRQIEAT
RRTITRYTKRGGKLWITVFPDKPITARAAESRMGSGKGSVEYWVAVVKPG
TILFELSGVPFTLAKDAMKIASYKLP
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mRNA from alignment at H-paniculata_contig26383:3017..3394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26383.7204.1 ID=mRNA_H-paniculata_contig26383.7204.1|Name=mRNA_H-paniculata_contig26383.7204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig26383:3017..3394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTAGCCCTAAAAAAACAAAATTTCGAAAACAACATCGTGGTCGTTT
AAAAGGAAAAGCTTCGCGAGGTAATACAATTAATTTTGGAGATTATGCTA
TTCAAGCATTAGAACCAACATGGTTAACTTCGCGTCAAATTGAGGCTACT
CGACGAACAATTACAAGATATACAAAACGAGGTGGTAAATTATGGATCAC
TGTATTCCCTGATAAACCTATAACTGCTCGTGCTGCAGAATCGAGAATGG
GATCTGGAAAGGGTTCAGTAGAATATTGGGTAGCTGTAGTTAAACCTGGA
ACTATTTTATTTGAATTAAGTGGTGTTCCTTTTACATTAGCAAAAGACGC
TATGAAAATTGCTTCTTATAAGCTTCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig26383:3017..3394+

>mRNA_H-paniculata_contig26383.7204.1 ID=mRNA_H-paniculata_contig26383.7204.1|Name=mRNA_H-paniculata_contig26383.7204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig26383:3017..3394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTAGCCCTAAAAAAACAAAATTTCGAAAACAACATCGTGGTCGTTT
AAAAGGAAAAGCTTCGCGAGGTAATACAATTAATTTTGGAGATTATGCTA
TTCAAGCATTAGAACCAACATGGTTAACTTCGCGTCAAATTGAGGCTACT
CGACGAACAATTACAAGATATACAAAACGAGGTGGTAAATTATGGATCAC
TGTATTCCCTGATAAACCTATAACTGCTCGTGCTGCAGAATCGAGAATGG
GATCTGGAAAGGGTTCAGTAGAATATTGGGTAGCTGTAGTTAAACCTGGA
ACTATTTTATTTGAATTAAGTGGTGTTCCTTTTACATTAGCAAAAGACGC
TATGAAAATTGCTTCTTATAAGCTTCCAATGCTTAGCCCTAAAAAAACAA
AATTTCGAAAACAACATCGTGGTCGTTTAAAAGGAAAAGCTTCGCGAGGT
AATACAATTAATTTTGGAGATTATGCTATTCAAGCATTAGAACCAACATG
GTTAACTTCGCGTCAAATTGAGGCTACTCGACGAACAATTACAAGATATA
CAAAACGAGGTGGTAAATTATGGATCACTGTATTCCCTGATAAACCTATA
ACTGCTCGTGCTGCAGAATCGAGAATGGGATCTGGAAAGGGTTCAGTAGA
ATATTGGGTAGCTGTAGTTAAACCTGGAACTATTTTATTTGAATTAAGTG
GTGTTCCTTTTACATTAGCAAAAGACGCTATGAAAATTGCTTCTTATAAG
CTTCCA
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